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Query: IDP05101 gene: hbd; 3-hydroxybutyryl-CoA dehydrogenase [Clostridium difficile 630] CD1058 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLAVIGSGTMGSGIVQTFASCGHDVCLKSRTQGAIDKCLALLDKNLTKLVTKGKMDEATKAEILSHVSSTTNYEDLKDMDLIIEASVEDMNIKKDVFKLLDELCKEDTILATNTSSLSITEIASSTKRPDKVIGMHFFNPVPMMKLVEVISGQLTSKVTFDTVFELSKSINKVPVDVSESPGFVVNRILIPMINEAVGIYADGVASKEEIDEAMKLGANHPMGPLALGDLIGLDVVLAIMNVLYTEFGDTKYRPHPLLAKMVRANQLGRKTKIGFYDYNKLast
1 -113.000IDP05101 gene: hbd; 3-hydroxybutyryl-CoA dehydrogenase [Clostridium difficile 630] CD1058 [Peptoclostridium difficile 630]  ali  100  1MKLAVIGSGTMGSGIVQTFASCGHDVCLKSRTQGAIDKCLALLDKNLTKLVTKGKMDEATKAEILSHVSSTTNYEDLKDMDLIIEASVEDMNIKKDVFKLLDELCKEDTILATNTSSLSITEIASSTKRPDKVIGMHFFNPVPMMKLVEVISGQLTSKVTFDTVFELSKSINKVPVDVSESPGFVVNRILIPMINEAVGIYADGVASKEEIDEAMKLGANHPMGPLALGDLIGLDVVLAIMNVLYTEFGDTKYRPHPLLAKMVRANQLGRKTKIGFYDYNK 281
2 -79.500IDP00999 gene: fadJ; multifunctional fatty acid oxidation complex subunit alpha STM2388 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  34  310SVGILGGGLMGGGIAWVTACKGGLPVRIKDINTQGINHALKYSWDLLETKVRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEG-ERVEHIDAALV-KFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVVASILNDDRKGRKNGRGFYLYGE 588
3 -77.500IDP00503 gene: fadB; multifunctional fatty acid oxidation complex subunit alpha YPO3766 [Yersinia pestis CO92]  ali follow..  34  314KLAAVLGAGIMGGGIAYQSALKSVPVIMKDINENSLDLGMNEAAKLLNKQLERGKVDGLKMASILATIRPTLDYAGIERAQVIVEAVVENPKVKAAVLAEVEALIGEDTVLASNTSTIPIDQLAKSLKRPENFCGMHFFNPVHRMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIVVNDCPGFFVNRVLFPYLAGFGMLVRDG-GDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDRDAVDVMFDNQRFGQKNGQGFYRYTQ 594
4 -75.900IDP04410 fatty oxidation complex, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N16961] VC1047 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  34  330AAVGVLGGGLMGAGISHVVAKAKTSVRIKDVANDGVLNALNYNYKLFDKQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIEANAKPTTIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIATVVTLARKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAG-EPIEKLDAALL-DFGFPVGPITLLDEVGVDIGAKIMPILVKELGP-RFQGPDVFDVLLKDNRKGRKSGKGFYTYKG 608
5 -71.300IDP02583 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5249 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  26  5KKAAVLGSGVMGSGIAAHLANIGIPTLLLDIVPPALTKEEEAKGLTLEHKSVRNRFSNTAVQKLLKQKNLEDDLERLADVDWIIEVVVENLDIKKKLFEKVDAVRKPGSIVSSNTSGISVEKMAEGRSDQKHFLGTHFFNPPRYLKLLEVIPTKKTDPQVLSFMKLFGEDLGKGVVIAKDTPNFIGNRIGTYGLLVTLQEMVKRGYSIGEVDSVTGPLIGRPSATFRTLDVVGLDTFVYVANNVYENVQEDVFKVPAFMHDMLDKKWLGSKTGQGFFLKQG 308
6 -71.100IDP00545 gene: fadJ; multifunctional fatty acid oxidation complex subunit alpha YPO2747 [Yersinia pestis CO92]  ali follow..  32  344RVGVLGGGLMGGGIANVTATRAGLPVRIKDINPQGINQALKYTWDALGKRVRSKRMRPTEQQRQMMLISGSTDYRGFERVDIVVEAVFEDLSLKQQMVADIERFGAAHTIFASNTSSLPISQIAALAQRPEQVIGLHYFSPVDKMPLVEVIPHEKTSEETIATTVALARKQGKTAIVVADRAGFYVNRILAPYINEAARCLLDGE-PIESVDNALV-DFGFPVGPMMLLDEVGIDVATKIMPILVEQLGP-RFAAPPSFDVILKDGRKGRKNGRGFYLYSN 621
7 -64.500IDP04044 gene: fadB/acbP; fusion product of 3-hydroxacyl-CoA dehydrogenase and acyl-CoA-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1530 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  27  118DKIAVLGAGTMGAQIAAHFANAKFPVVLFDLKSQQGSAN-VIIEDSLAKLTKLNPFGSKDSIKYITPANYEDNLELLADCDLIIEAVAERIDIKESLYTKISSHIKENAILASNTSGLSITKLAQVLPENVNFCGVHFFNPPRYMPLVELIPHADTNSEILDKLETFLEKLGKSIIRAKDTPNFIANRLGVFSMLVTCYYTEQMSIPLEVVDELTGKKLGRASATYRTADLVGLDVLSHVVETMKDNLEDKLYNTPNWIQNLINNGSLGQKTKKGLYIKAS 406
8 -13.500IDP06064 3-hydroxyacid dehydrogenase [Helicobacter pylori J99] NP_223303 [Helicobacter pylori J99]  ali follow..  13  1MKIGWIGLGAMGTPMATRLRDAGLEVSVYNRTESKAAPLKEK-----------------------GVAVYTSPIDLAAKVDLVFTMLSDKAAIDAVLAPKFWEQMSKKIVVNMSTIA---PLESLSLEKIAQKHQATYLEPVS--ALLILAAG---DEEVISKLKPVLAHLGSQTFYLGKVGQGTGAKLSINSL----------AQMGVAYSEALLLAKRLGVDAESFLQIIGQSGMNSLFQAKKGMWLQDNYPAAFSLKLMAKDIRLAKNEAG....... 245
9 -11.500IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  18KKVAIIGYGSQGHAHAQNLRDNGFDVVVGLRKGKSWDKAKE------------------------DGFSVYTVAEAAKQADVVMILLPDELQPEVYEEEIAPNLQAGNSLVFAHGFNVNVDVFLVAPKGPGHLVRRTFSEGGAVPALFAVYQD--ATGVATEKALSYADGIGATRAGVLET-TFKEETETDLFGEQAVLCGGVTALVKAGFETLVDAGYQ............................................................. 219
10 -11.000IDP02492 gene: proC; pyrroline-5-carboxylate reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT1559c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  1MKICFIGGGNMAAAMIAGMTSHGYDIIVFDRNEHKCLNLIKKYNINT----------------------STSLLNTIKLADVLILAI--KPQNMFELIKNIRDTVTSTQVIVTVAAGIQTSAYEELFNKEISFARTIPNTPSSLYGATGIFFNKVIAADKKDLVIDIMQTMGVVTVVEDEKPAYYAEKLVVQTCLGAAQMALNTNENMSELRKNVTSKKGITYEALNIFEQFNLGGIV........................................... 250
11 -10.700IDP02668 gene: gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1526 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  3.KITVVGAGSWGTALAMVLADNGHDVRIWGNRSELMDEINT----------KHENSRYLPGITLPSTIVAYSSLEELVDVNVVLIVVPTKA---REVLQDMKKYVAGPTTWIHASKGIEPGTSKRISEVIEEEIPEDLIKDVVVLSAEEVGLRQATTVTSAAKRMEAAEEVQDRVYTNPDIVGVELGGALKNIINAKAALMTRGLTEIARLGRKMGGNPLTFAGLTGMGDLI-----------------------VTCTSVHSRNWRAGNMLGKG...... 267
12 -10.400IDP00666 TrkA potassium uptake family protein SACOL1096 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  4.EYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAV--------VADTTDEAVMKSL-------GIRNFDHVIVAIGENIQSSTLTTLILKEL-GVKKVTAKAQNDYHAKILADTVVHPERDMGLDYLELADEHSIVELKATEKMAGQSIIDL-DIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIG............................................................................. 205
13 -10.400IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  19KKVAIIGFGSQGHAHAMNLRDNGVNVTIGLREGS-----------------------VSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEGKAIAFAHGFNIHYGQIVV............................................................................................................................................................ 120
14 -10.300IDP04467 putative nucleotide sugar dehydrogenase [Yersinia pestis CO92] YPO2174 [Yersinia pestis CO92]  ali follow..  16  1MKVTVFGIGYVGLVQATVLAEVGHDVLCIDIDANKVAD----LKKGRIAIFEPGLAPLVKENYEAGRLQFSTDAQAVAHGVIQFIAVAADLKYVLDVASTIGTYMDSPKVIVSNPEFLKEGAAVADCKRPERIVGIDTDDSGALELISELYEPFNRNHDRMLVMDIRSAELTKYA-----ANGMLATKI--SFMNEIANIAERLGADIEKVRQGI--GSDSRIGYHFIYSGCGY............................................... 264
15 -10.200IDP01730 gene: gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [Francisella tularensis subsp. tularensis SCHU S4] FTT0871 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  3KNILVLGAGAWGTALALQLAYRGHNVRINSWKAEHNEQMLKD---------NNNHKYLPSIEKFPSRLKAIQDWQAIIEFDSILVATPSSG---KNTILELKECILPQQNIISATKGFCHDSYALLSEIAEDILPTT----------FALLTGPSFAKELANQLPTAVVVASKDINYARYVQELFSNENFRCYTTTDIIGAQVGGAVKNVLAITAGIAAGMEFGVNAHAALIGLAEIKKLGLKLGANLGD-----LTCSDNQSRNRRFGLYLGQG...... 266
16 -10.100IDP01104 potassium uptake protein, TrkA family BA_4191 [Bacillus anthracis str. Ames]  ali follow..  14  7.EFAVIGLGRFGGSICRELAQLGMEVMAIDSDEDKINEFANIASHAV--------IADSTDEMVLKSL-------GIRNFDHVVVAIGDNLN-SSILTTLILKELGVKNITVKAQNDYHEKVLADHIVHPERDMGLDYLELSDEHSIVEIIANKKIDGHSLIEL-DIRAKFGLNIVAIKRGKEVIVSPRATENIQAGDILIVIG--HDDEVDRFKHF................................................................ 219
17 -9.990IDP00702 gene: cap5O; capsular polysaccharide biosynthesis protein Cap5O SACOL0150 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  1MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGLQEVYEEVLSSGKLTPDASDVFIIAVPTPNNDDQYRSCDILVMRALDSIL---------SFLEKGNTIIVESTIAPKTMDVKPVIENLGFTIGEDIHCP-ELVHNNRIIGG--VTEACIEAGKRVYRTFVQGEMIETDARTAEMSKLMIALANELTKICNNLNINVLDVIEMANKGHCLAVDPYFIIAKDPENAKL........................................... 276
18 -9.760IDP01235 gene: wecC; UDP-N-acetyl-D-mannosamine dehydrogenase BA_5512 [Bacillus anthracis str. Ames]  ali follow..  12  1MKICTMGLGYIGLPTSAMFAKYGTEVVGVDIHQKVVDK----LNNGEIHIEEPGLGEVVKEVVANGKFRASLTPE---EADAFIISVPTDLSYVLTATEKVLPFVKKGNVIIVESTIAPRSMVKPLVEEAGFTVGEDIHCP-ELVHNNRIVGG--VTPACAEAGARVYGVFVEGEIIKTNAKTAEMSKLMIALANELTKVCNSLDINVLDVIEMANKGHCLAVDPYFIV.................................................... 267
19 -9.710IDP01406 gene: wecC; UDP-N-acetyl-D-mannosamine dehydrogenase VC0918 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  18  3NKVSVIGLGYIGLPTAAVLASRGLDVVGVDVNAHAVDT----INKGEIHIVEPDLDIVVRSAVMTGKLKATLTAE---PADAFLVAVPTDLSYIEAAAKTIAPVLAKGNLVVLESTSPVAEARPDLTFPQQKGIAADVYCP-ELVSNDRVIGG--VSKACSEKAVALYKTFVKGECIVTNARTAEMAKLTIAFANELSLVCNKLKINVWELIRLANRGHCIAVDPWFIVNSCPDEAQL........................................... 284
20 -9.690IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  17KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA------------------------DGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQIN............................................................................................................................................................. 116
21 -9.690IDP01944 putative sugar-nucleotide epimerase/dehydratease [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1427c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  3KKVLITGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLSCFHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVKMISDFASPSFIYPNTNSGYGIGEKDAMCTEESPL------RPISEYGIDKVHAEQYLLDKGNCVTFRLATVFGISPRMRLDL---LVNDFTYRAYRDKFIVLFEEYIHVRDVVKGFIHGIENYDKMKGQAYNMGLSSANLTKRQLAETIKK............................... 251
22 -9.640IDP92100 malate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_118430 [Toxoplasma gondii ME49]  ali follow..  15  159.KIGLIGGGNIGATLALLSAVKELDVVMFDVVQDLPQGKCLDLYQL------------TPISGVDVRFEGSNDYSVLKDADVIIDLLAINAKIMGQVGEAIKQYCPNAFVIITNPLDVMVYILREKCGLPPHVMGGHGDTMVPLIPLPELVKMGMISQQEVDDIVQRTRNGGGEIVSLLKTPAAAGVLMAEAYLKDRKRVLPNGEYGVKDMYVGVPCVIG------------GVEKIVEL--DLTPEEKKMFERSVESVKTLLAA................ 465
23 -9.630IDP01969 gene: kfiD; putative UDP-glucose 6-dehydrogenase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1441c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  1MKIVIVGIGYVGLANAILFSKNNNEVVLLDIDENKIQSINNHKSPIKDKLIEK-------FVQNISKLHATSNIKEYFNADFAVIATFFDTRSIENVLKDIKNINSKINVIIKSTVPIGYTKTIKQKFNMSNIV--DSLYPSRIIIGDKSVLGKTIGDLFLKNIEKKNVDIFYMDSDEAESVKLFSNTYLVGFFNEVDSYARKHNLNSADIIKGI--SADDRIGKYYNNPSFGY............................................... 251
24 -9.600IDP02372 gene: mdh; lactate dehydrogenase [Francisella tularensis subsp. tularensis SCHU S4] FTT0535c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  4KKITLVGAGNIGGTLAHLALIKQLDVVLFDIAQGMPNGKALDLLQTCP------------IEGVDFKVRGTNDYKDLENSDVVIDLLGINIKVMQTVGEGIKHNCPNAFVIITNPLDIMVNMLQKFSGVPDNVMGGHGDTMVPLVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-APAAAGIQMAESFLKDKKMILPAAKVKAGMYGLDEDLFVGVPT-------EISANGVRPIEVEISDKEREQLQVSINAIKDLNKA................ 312
25 -9.550IDP91958 Trk family potassium uptake protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004562 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  16  5.TIGILGLGIFGSSVLAALAKQDMNIIAIDDHAERINQFEPVLARGV--------IGDITDEELLRSA-------GIDTCDTVVVATGENLESSVLAVMHCKSL-GVPTVIAKVKSQTAKKVLADSVISPEYEMGQSLAQTILFHNSVDVFQ................................................................................................................................. 143
26 -9.510IDP01494 UDP-glucose 6-dehydrogenase VCA0780 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  1MKIAIAGTGYVGLSNGILLAQ-HNEVVALDIVVSRVEQLNDKISPIADPEI------ESFLQHQPLNFRATCDKRDYQDAQFVVIATPTDTRTVEAVIDDVLAINPQAIMVIKSTVPVGYTK--NLIFSPEFL---DNLYPSRIIVGEKSERGQAFATLLAQGAKKMDIPILLTHSTEAEAVKLFSNTYLVSFFNELDTYAETHGLDTKQIIEGV--GLDPRIGNHYNNPSFGY............................................... 249
27 -9.500IDP00425 gene: wecC; UDP-N-acetyl-D-mannosamine dehydrogenase YPO3863 [Yersinia pestis CO92]  ali follow..  15  4ETISVIGLGYIGLPTAAAFASRKKKVIGVDVNAHAVET----INRGAIHIVEPDLDKVVKIAVEGGYLQAVTK---PQAADAFLIAVPTDMIFVESAAKSIAPVLKKGDLVILESTSPVGATEQMAQWLAEARPDLSFYCP-ELIQNDRVIGG--MTPKCSARASALYKIFLEGECVVTNSRTAEMCKLTIAFANELSLICDEQGINVWELIRLANRGHCIAVDPWFIV.................................................... 275
28 -9.430IDP90565 ketol-acid reductoisomerase [Vibrio cholerae O1 biovar eltor str. N16961] VC0162 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  38KKVVIVGCGAQGLNQGLNMRDSGLDVSYALRQAAIDEQ------------------RQSFKNAKNNGFNVGSYEQLIPTADLVINLTPD--KQHTSVVNAVMPLMKQGAALGYSHGF-DITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPQGEGWEIAKAWAAATG............................................................................................................. 199
29 -9.170IDP01976 gene: gpsA; glycerol-3-phosphate dehydrogenase (NAD+) [Coxiella burnetii RSA 493] CBU_1518 [Coxiella burnetii RSA 493]  ali follow..  13  6HPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQA----------EGVNNRYLPNYPFPETLKAYCDLKALEGVTDILIVVPSFA---HEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERVYKNDDMIGVELCGSVKNILNARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLV-----------------------LTCTDNQSRNRRFGLALGEG...... 267
30 -9.140IDP90709 gene: ubiG; 3-demethylubiquinone-9 3-methyltransferase [Yersinia pestis CO92] YPO1215 [Yersinia pestis CO92]  ali follow..  14  58KKVLDVGCG--GGILAESMAREGAQVTGLDMGYEPLQVARLHALETGVKLEYVQETVENHAQQHPQHYDV-----------VTCMEMLEHVPDPASVVRACAQLVKPGGHVFFSTINRNTKSWLMAVVGAEYLLGTHFIRPSELIGWVD.................................................................................................................................... 202
31 -9.080IDP01741 gene: ptmA; flagellin modification protein A [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1332 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  10  5.KIIFVACGRIGKALCEKILLSKGIPILADINKECLNKLQENLETNFKTKLLSLELDITKQESLQTALQKS--QERYGKIDAFVNSSTPYYELKYEQICESLNLHLAGFMLAAQENIINLSSIMGVYAPKFENYE---------TSMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVN-ASGGILDNQNELFLKAYRKCCASKMLDADDICGTLVFESKFITGQTLVVD................................................... 251
32 -9.060IDP92023 glycerol-3-phosphate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_010260 [Toxoplasma gondii ME49]  ali follow..  13  17LKVSVVGSGNWGSVIAKIVALNAQKSYVFHNEVRMWVYEEMVDGEKLTDIINKTHENRKYLPGHKENLVALPDVVECRDSDLLIFIMPHQF---TKVCEQLAEVVPGHARAITLLKGLHVENFSDIFKT---LSGANVANDVAREEFAEATIGYSPEEDAALIWQQLFDTPYFKVNALPDVAGV-----------QVCGAVKNVIAIAAGFCDGLGLGTNAKTAIIRL----GVEEMKQFAMIFFDNIMAETFFDSAGYADVITTGGRNARCAAEFLRRGG 299
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;