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Query: IDP05200 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2714 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKFHGLILTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKTEPAEPTKDTTVTPPQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKKLast
1 -112.000IDP05200 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2714 [Listeria monocytogenes EGD-e]  ali  100  1MKKFHGLILTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKTEPAEPTKDTTVTPPQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK 315
2 -15.900IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  17  224.......................................................................................................................TSAVNLAVSGDYSVNVQATDKAGNVSNTLNVTVHVSTPAPVAGANITVNAESDTLTGVV--NSNYQSESKKITGYTLETTPTNATGTFTDT-------------------PQTVDYIYKKDTVTPTPITPVNPVVNKPVTVKPANDNTNPSTSNSVEKTTYSSLPTTGDTDQSKSSTIFGALLLLISAPLLLFKKK 415
3 -15.800IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  7 1724..................PKAKPGLSMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLA---ATRRRDDKLQRQVEAE-RERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQLDLAGRT.......................... 1990
4 -15.600IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  14  70..............................................................................................................................................................................................................................................MAKKEEAIKAQQKSEEGKKEAAQVQPKNAATKKEVAKPAVQGEKLPNTA--SNNVAMMALSALVGIGTLFGLKRRNK 145
5 -15.300IDP05671 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0725 [Listeria monocytogenes EGD-e]  ali follow..  35  25............................................................................................................................................................................................................................................................................STAVAFENTSSASLLPSTGDAFSVWPIVIGVVLVALAVVLFIKKK.. 69
6 -15.100IDP05443 hypothetical protein lmo0463 [Listeria monocytogenes EGD-e] lmo0463 [Listeria monocytogenes EGD-e]  ali follow..  20  29..........................................................................................................................................................................................................................................................SEDDLDVSEENIQEIPKKELAASSDKDNKQHMLPKAGDTVTNYTLL--GLVLVLIWLIMQRKRKK 91
7 -14.900IDP06525 gene: fms17; LPXTG family cell surface protein Fms17 [Enterococcus faecium DO] AFK58157 [Enterococcus faecium DO]  ali follow..  13  260...........................................................................................................................DMAPANDLKNQWIKPADNDPLNDKNVSKFISDKEGLVTTGQRFLPSGTYYFEELKGV---------------EGYEMDEASKRIEVIIPEFWVDAKGQPQYVVVN-GQEMAELESGKVPVSAYESATPRVYNETVKETTDKPKEPSGPSNPGQSGKWSVFPQTNEARTLISLL--GILLLLGAVLLIKKERG 433
8 -14.600IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  16  284...................................................................................................................................DVTVTYKDTKGNQLADPVILK-------------TFETEAKSFKGYK-------------------KTPSNHSSVFT-----SDSQEVEYVYSKDDAVITPPVTPVNPDKPIINPVKPVNPATSTVPNKNISKKNTTKTVNQTGKTSTALQLPKTGDSENNLPLIIGVSLLISGVYIFTTRRKR 437
9 -13.400IDP02382 hypothetical protein lmo0320 [Listeria monocytogenes EGD-e] lmo0320 [Listeria monocytogenes EGD-e]  ali follow..  20  325.............................................................................................................................................................................................................................................ADSSENEPEKSADSKIVNNPIQITSQATKTATKQAKSSATKTTLPLPKAGDTETTSSILF-GTLMLSSLVLFKRKK.. 399
10 -13.100IDP91950 beta-N-acetylhexosaminidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006639 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11 1020....................NRNKQAELDTLVANLKAALQGLKPAATHSGSLDENEVAANVETRPELITRTEEIPFEVIKKENPNLPAGQENIITAGVKGERTHYISVLTENGKTTETVLDSQVTKEVINQVVEVGAPVTHKGDESGLAPTTEVKPRLDIQKEEIPFTTVTRENPLLLKGKTQVITKGVNGHRSNFYSVSTSADGK---VKTLVNSVVAQEAVTQIVEVGTMVTHVGDENGQAAIAEEKPKEIPSQPAPSTAPAEESKALPQDPAPVVIEKKLPETGTHDSA-GLVVAGLMATLAAYGLTKRKED 1312
11 -12.300IDP05677 hypothetical protein lmo1068 [Listeria monocytogenes EGD-e] lmo1068 [Listeria monocytogenes EGD-e]  ali follow..  13  1MKKWMVIISIISLVALLGACGNNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKENDTNDKAATTDKGSSNPTKEEKDTSTTTDTPKKETPKSPAKTEAFSFSP................................................................................................................................................................................................................. 106
12 -12.200IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  13 1458.......................SEAKIDEANVEIKTDFAEKVDINKVGTYTVTLTATNEDGQAANPVEVSVIVSDAAAEKVNVKYVDENGSEISAAETLTGNLDETFSIDAKSIA---GYKCDATLSGVFSTVEQTVVFHYKAIKGVVTIKYEDTNGKAVDEDKDFEAEAQTVSGYSCRAIASGKITEEPQTITSTATPSKKSGEITVQYVDESGKKLADSKKVTGNIDDSYSYSVVGDDSAKGVFTEKSQTVTSKDDPKVKGKTNQPSSTDTKLKVDNNSLPATGDTENMILAVLIGFNMLIVASIFLFRKPK 1775
13 -11.400IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  17  436...................................................................................................................................DESKLPTNASGKTNAQTVTYVYKTIPASIKAHDSTMNVGDTW-LGVAVPFDEVKV---------DGSVDTTKAGVYPVTYSFAGDSVTIKVTVKATVVPAPPI--TPIKPVVPAPANPNTPSTQQTPTKQSGTLKIKATHQEQPIVAGNLKLPTTGDNLWSVLYSIFGFITVCLSFVLFFRLKK 622
14 -11.400IDP05223 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0160 [Listeria monocytogenes EGD-e]  ali follow..  11  278..................................TTSTDNGASPNYTNKGQLTGDNFIKQEIEVATPTSGGGGGGEGTTGSVELTKTDDSSQKNPLEGAEFKLVNGAGATVQTGLKTNADGKLAISNLKYDTYQLIETKAPQVLDASPVKFTIDDTHQSLFVSKENTAIKGSVSTKSLLADAEFELQDKDGNTLKT-NLKTDQKGKLTVADLLPGEYQFVETKAPTGYILDTTPLKFKSTEALNVTVTKENTKKPEIPKVPVPPKKPEKPDKIISEDSKQTALPKTGDSPLVNGWGL-LLVAISASGLIALRRK. 565
15 -11.300IDP91913 cell wall surface anchor family protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006539 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  16  265.......................................................................................................................................................................................................................................................KRPVAPNAAPKTTSAPQATAGTMQDVTYQSPAGKQLPNTGSASSA-ALASLGLVVATSGFALLGRKTR 331
16 -11.000IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  15  389.......................................................................................................................NTIVDFSKPGVYTVTLNAENAAGLKAPTQVTVTILAKPVITADKSISYTKDTTK---------------TEQQFLQDIAAKTSDGSKVTSDFDSVVDKVTLNAVSADGLNADPVIILVGPGPDPTPDPTPNPNNPNINPNPDNGQSAKSEIASNPSNSEVNIALPNTGDA-SQATTVLIGIILAGVAILFFRKRKH 588
17 -10.800IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  13  541....................AVVTDLYDEAIKMEVDLSEVDSSKLGTYEATIIAKSKSGASSDPIKLSVKIVDTEKPIIQINNPEIIIEKGSELTEGQIIDQVGITATDNYDQDLNIHMDSKVDTSKPGSYEVTIYTEDSSGNRSETVTITVKVPEARIGKITIQYMDSENNELA-TGEVGETYETLAKEIEGYTLKENPANSSGVFEETR----QTIQYIYVKDIINPEFPVY----SENNVTPELPSNNNNSVNGSRQTPSKSVKKQSKAYSKINQMPMNLPETGDS-TNLLFIFMGVLLLAGLTLSKAKRKN 831
18 -10.800IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  9  25IRKYTVGTASILVGTTLI--------GNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVGDGKDNVAAAHDGKD.......................... 308
19 -10.700IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  12 1083.............................DANGKELQAPKVDAKTYHIQDTYKTTAAVIPGYTLVAIPKNDQGTFGANNVTVNYVYQTNDYTLTATFKDAQGNELKATEVDAQKYHIHDTYTSKAAVIPGYTLEKTPTNETGTFNASDIQVNYVYKANDYQLTSTFKDQQGNEIAKTYHIHEAYTTKARLIPGYSLVAAPKNQIGAFGTS-------------------DVTVNYVYKKDAIIKPIT----------PAKPTILTIKTPASKVIKTKVVKQTLPKTGDDDAGLLNLLRLIGLVLILGVFLSKKLR 1348
20 -10.400IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  9  1MKKLLVPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDSNNASHKDNKDNNVSNNKNTNKKLD....................................................................................................................................................................................................................................... 84
21 -10.200IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  11  377.......................................................................................................TDIKADANGGTITSDLTDKVDFTKPGNYTVTLNAQNTKGLKGE-PIQVTVTIIEKTVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITESAVDFTKAGEYIVTLNAENDTVKIRVNPKLPDPVVPIPYPDPTPDPTPDPTVPVPTPEDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDS-LPESGVLLGFLTLALGIVIRKK... 593
22 -10.200IDP05488 putative LPXTG-motif cell wall anchor domain protein [Bacillus anthracis str. Ames] BA_4789 [Bacillus anthracis str. Ames]  ali follow..  22  161.............................................................................................................................................................................................................................................TTKNNDQAKTDTQVKEEKTKVESKETAKEVNKETKNENGKAEKTDNPKTGDEARIGLFA---ALILISGVFLIVKLSK 237
23 -9.790IDP06504 Surface protein from Gram-positive cocci, anchor region [Enterococcus faecium DO] EAN10897 [Enterococcus faecium DO]  ali follow..  10  1MRTKQVLKGALVILFAVSTSVPQWTVYGESISSESESREVETTETTDAGNETKSSTSQTETNTETTVETSVTSTDQETTATTDNQQTEEATATKMSNDESSSAKVSDKENGTENDDIGKGENFNGKEYLNYFGKQMTEILNGPTEDIK....................................................................................................................................................................... 148
24 -9.640IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  19  370.........................................................................................................HAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDDKVVDLNTPGEYT---------VTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTA-LPIAGVMLSLAALLIFRKSKS 605
25 -9.570IDP05538 putative collagen-binding surface protein [Clostridium difficile 630] CD3392 [Peptoclostridium difficile 630]  ali follow..  11  738.............................QLKGWQMLKEENAELIIDGKRVENDYTFIADEEEMKVEISYTFNASALGGKNLVTFEELYDLSNPDEPVKVAEHKDIEDDGQTVLITERIIKIHTTATDKDGNKELEAGKDVTIIDTVTLEGLEVGTQYKLVGWQMLKEENAELLVNGKRVESDYTFIADSENMKVEVAFTFDATS-------LDGKQLVTFEELYDLSNTDEPKKVTEHKDIED-------EGQTITFKEKPEVPEKPEQPQTPEKPSRPSDSPKTGDSTNLMAFIVMLLVSGGGLAGTYLYKRR 1009
26 -9.500IDP06012 membrane-attack complex / perforin domain-containing protein [Toxoplasma gondii ME49] EEB00555 [Toxoplasma gondii ME49]  ali follow..  10  2LLSAIGGIGPTESRLQHIPFSTTRYLPIRSHVLQSTVERIESPEALNEVTKVERNEFTEKGDKTEQVLTAQADHKSLLEGRSVRLESTSTAPDDDFDFLFEDDTPKKPKSRVNKGTSSDETSPGDRSSGEGSSDSDSLLSVVHRTKGNATQANKNQTRITHPKS----------KAQHQKKVTKKQGIPGSDSLGTSSADFDFDIDSSSNTQADDSQ------RQSLGDSSALDLFGSDTGDTGDIFGFSNSSSDGGNAAANDGGLFSSSGMGPTGASDETSANPLGSILGG....................... 278
27 -9.490IDP06531 gene: fms7; LPXTG family cell surface protein Fms7 [Enterococcus faecium DO] AFK59141 [Enterococcus faecium DO]  ali follow..  9  4LRTKQVLKGALVILFAVSTSVPQWTVYGESISSESESREVETTETTDAGNETKSSTSQTETNTETTVETSVTSTDQETTATTDNQQTEEATATKMSNDESSSAKVSDKENGTENDDIGKGENFNGKE............................................................................................................................................................................................ 130
28 -9.390IDP06539 gene: fms13; LPXTG family cell surface protein Fms13 [Enterococcus faecium DO] AFK58158 [Enterococcus faecium DO]  ali follow..  8  383.....................................................................................................................YEEGVEPPEKVTTGGRKFEKYDASSSELLKDARFELWNEDRSEYAIFYKGESPLAVYESGADRIEWA-------TSGQATEFVADGNGYFEVQ-------------------LDYGTYQMKETMATGEAAFTEFIISYGSYNEEIQIVGVENPGPERVPNMKRGSLPATGGNGLLAFLLIGISLMIGAYSWYRKSKMK 562
29 -9.330IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  9  25IRKYTVGTASILVGTTLI--------GNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVGDGKDNVAAAHDGKDIE........................ 310
30 -9.240IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11  768......................KLNQGTTRTAGNKIPVTFMANAYLDNQSTYIVEVPILEKENQTDKPSILPQFKRNKAQENSKLDEKVEEPKTSEKVEKEKLSETGNSTSNSTLEEVPTVDPVQEKVAKFAESYGMKLENVLFNMDGTIELYLPSGEVIKKNMADFTGEAPQGNGENKPSENGKVSTGTVENQPTENKPADSLPEAPNEKPVKPEN------TDNGMLNPEGNVGSDPMLDPALEEAPAVDPVQEKLEKFTASYGLGLDSVIFNMDGTIELRLPSGEKKNLSDLIA.................. 1039
31 -9.230IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  24  909............................................................................................................................................................................................................................................................IIPIPEVVKPSVSEEKNNKVKDDTLVNPPVPPKTGDSTTIIGEIL-LVIGAIVGLIVLRRNKN 970
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.