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current user: public |
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Query: IDP05274 hypothetical protein lmo1880 [Listeria monocytogenes EGD-e] lmo1880 [Listeria monocytogenes EGD-e], from CSGID |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 | |||||||
# | Score | Template | Links and tools | %id | First | MEVFVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQATLIRLYSDSKVAIEAIHKRHAKNPLFKPHLDAILEMADSLELFFAEWRNVSQNKQADQLARQAIKKQKQPGVK | Last |
1 | -88.500 | IDP05274 hypothetical protein lmo1880 [Listeria monocytogenes EGD-e] lmo1880 [Listeria monocytogenes EGD-e] | ali | 100 | 1 | MEVFVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQATLIRLYSDSKVAIEAIHKRHAKNPLFKPHLDAILEMADSLELFFAEWRNVSQNKQADQLARQAIKKQKQPGVK | 133 |
2 | -82.000 | IDP05360 gene: rnhA; ribonuclease H [Bacillus anthracis str. Ames] BA_1623 [Bacillus anthracis str. Ames] | ali follow.. | 42 | 2 | IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKAILQN...... | 128 |
3 | -39.400 | IDP06115 gene: rnhA; ribonuclease H [Helicobacter pylori J99] NP_223324 [Helicobacter pylori J99] | ali follow.. | 23 | 4 | IEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKILKR--PCHITLYSDSQYVCQAINVAKVKNVDLWKEFVKVSKGHSIVAVWIKGHNGHAENERCNSLAKLEAQKRVKTT.. | 142 |
4 | -5.340 | IDP05586 putative lipoprotein [Bacillus anthracis str. Ames] BA_2746 [Bacillus anthracis str. Ames] | ali follow.. | 9 | 64 | ............PGVNDATAVVVGKYAIVGIDVKAKLDRTRVESIKYSVAE-SLKNDPDGANAVVVADVDTYLKQIGKQIKKGKTGEGILDELAAIVGRVMPQVPNDMIENKETNPIQDNDKQLPKDEEQELR | 185 |
5 | -5.310 | IDP06060 gene: ribD; riboflavin-specific deaminase [Helicobacter pylori J99] NP_224116 [Helicobacter pylori J99] | ali follow.. | 19 | 12 | LNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPH-AEVLAAKSALKILRPHLKSDLEKLEDPKILSDFLKTR...................................................... | 89 |
6 | -5.190 | IDP92781 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09399 [Vibrio cholerae O1 biovar El Tor] | ali follow.. | 12 | 26 | ......................................TNDVTKLVVCLSGLNIPRATIANIVKAETGTTLSVNRITKIRSAYSSIVKTLSEETDHLYQFHDI.............................. | 90 |
7 | -5.090 | IDP95301 GTP-sensing transcriptional pleiotropic repressor CodY [Listeria monocytogenes 10403S] YP_005962396 [Listeria monocytogenes 10403S] | ali follow.. | 13 | 123 | .................LGTLI-----LSRLESNFTDDDLLLAEYGGTVVGMEILHEKAEEIEEEARSRAVVQMAISSLSYSELEAIEHIF--DELNGKEGLLVASKIADRVGITRSVIVNA........... | 220 |
8 | -4.760 | IDP05288 gene: fliJ; flagellar protein [Clostridium difficile 630] CD0252 [Peptoclostridium difficile 630] | ali follow.. | 12 | 59 | ...................................NDSIQNQKITINYLLALNNSIMDLSEELD---KSTNELEKARKQLISKQIERKSLEK---LKEKKYGQYYKEENLKEQNTNDEFASMSYLRNRQ.... | 146 |
9 | -4.760 | IDP00051 phenazine biosynthesis protein, PhzF family BA_3469 [Bacillus anthracis str. Ames] | ali follow.. | 25 | 9 | YDAFTNKPNMGNP----AGIVLDADGLTEEEMQRIAEKVG-FNETSFVLSS-----EVADIRMRYFTPGYEM............................................................. | 70 |
10 | -4.750 | IDP05108 hypothetical protein CD1761 [Clostridium difficile 630] CD1761 [Peptoclostridium difficile 630] | ali follow.. | 22 | 6 | VDSFATKLFKGNP----AGVCVLDRRIPLELMQKIA-EENNLPETAFVV.................................................................................... | 49 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30. |