current user: public

If you have questions about the server, please let us know.

Query: IDP05274 hypothetical protein lmo1880 [Listeria monocytogenes EGD-e] lmo1880 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MEVFVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQATLIRLYSDSKVAIEAIHKRHAKNPLFKPHLDAILEMADSLELFFAEWRNVSQNKQADQLARQAIKKQKQPGVKLast
1 -88.500IDP05274 hypothetical protein lmo1880 [Listeria monocytogenes EGD-e] lmo1880 [Listeria monocytogenes EGD-e]  ali  100  1MEVFVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQATLIRLYSDSKVAIEAIHKRHAKNPLFKPHLDAILEMADSLELFFAEWRNVSQNKQADQLARQAIKKQKQPGVK 133
2 -82.000IDP05360 gene: rnhA; ribonuclease H [Bacillus anthracis str. Ames] BA_1623 [Bacillus anthracis str. Ames]  ali follow..  42  2IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKAILQN...... 128
3 -39.400IDP06115 gene: rnhA; ribonuclease H [Helicobacter pylori J99] NP_223324 [Helicobacter pylori J99]  ali follow..  23  4IEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKILKR--PCHITLYSDSQYVCQAINVAKVKNVDLWKEFVKVSKGHSIVAVWIKGHNGHAENERCNSLAKLEAQKRVKTT.. 142
4 -5.340IDP05586 putative lipoprotein [Bacillus anthracis str. Ames] BA_2746 [Bacillus anthracis str. Ames]  ali follow..  64............PGVNDATAVVVGKYAIVGIDVKAKLDRTRVESIKYSVAE-SLKNDPDGANAVVVADVDTYLKQIGKQIKKGKTGEGILDELAAIVGRVMPQVPNDMIENKETNPIQDNDKQLPKDEEQELR 185
5 -5.310IDP06060 gene: ribD; riboflavin-specific deaminase [Helicobacter pylori J99] NP_224116 [Helicobacter pylori J99]  ali follow..  19  12LNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPH-AEVLAAKSALKILRPHLKSDLEKLEDPKILSDFLKTR...................................................... 89
6 -5.190IDP92781 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09399 [Vibrio cholerae O1 biovar El Tor]  ali follow..  12  26......................................TNDVTKLVVCLSGLNIPRATIANIVKAETGTTLSVNRITKIRSAYSSIVKTLSEETDHLYQFHDI.............................. 90
7 -5.090IDP95301 GTP-sensing transcriptional pleiotropic repressor CodY [Listeria monocytogenes 10403S] YP_005962396 [Listeria monocytogenes 10403S]  ali follow..  13  123.................LGTLI-----LSRLESNFTDDDLLLAEYGGTVVGMEILHEKAEEIEEEARSRAVVQMAISSLSYSELEAIEHIF--DELNGKEGLLVASKIADRVGITRSVIVNA........... 220
8 -4.760IDP05288 gene: fliJ; flagellar protein [Clostridium difficile 630] CD0252 [Peptoclostridium difficile 630]  ali follow..  12  59...................................NDSIQNQKITINYLLALNNSIMDLSEELD---KSTNELEKARKQLISKQIERKSLEK---LKEKKYGQYYKEENLKEQNTNDEFASMSYLRNRQ.... 146
9 -4.760IDP00051 phenazine biosynthesis protein, PhzF family BA_3469 [Bacillus anthracis str. Ames]  ali follow..  25  9YDAFTNKPNMGNP----AGIVLDADGLTEEEMQRIAEKVG-FNETSFVLSS-----EVADIRMRYFTPGYEM............................................................. 70
10 -4.750IDP05108 hypothetical protein CD1761 [Clostridium difficile 630] CD1761 [Peptoclostridium difficile 630]  ali follow..  22  6VDSFATKLFKGNP----AGVCVLDRRIPLELMQKIA-EENNLPETAFVV.................................................................................... 49

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.