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Query: IDP05307 lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0362 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDTASWQPSAPIANLLKRAAIMAEIRRFFADRGVLEVETPTMSQATVTDIHLVPFETRFVGPGAADGLTLYMMTSPEYHMKRLLAAGSGPIYQLGRSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQILDCNSAETLSYQQAFLRHLNIDPLSAEKAQLREVAAKLDLSNIADTEEDRDTLLQLLFTVGVEPYIGRDKPAFIYHFPASQASLAEISTEDHRVAERFEVYFKGIELANGFRELTDGDEQLQRFEQDNRNRAKRGLPQNPIDMNLIAALKQGLPDCSGVALGVDRLVMLALNAERLSDVIAFPVNIALast
1 -146.000IDP05307 lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0362 [Yersinia pestis CO92]  ali  100  1MSDTASWQPSAPIANLLKRAAIMAEIRRFFADRGVLEVETPTMSQATVTDIHLVPFETRFVGPGAADGLTLYMMTSPEYHMKRLLAAGSGPIYQLGRSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQILDCNSAETLSYQQAFLRHLNIDPLSAEKAQLREVAAKLDLSNIADTEEDRDTLLQLLFTVGVEPYIGRDKPAFIYHFPASQASLAEISTEDHRVAERFEVYFKGIELANGFRELTDGDEQLQRFEQDNRNRAKRGLPQNPIDMNLIAALKQGLPDCSGVALGVDRLVMLALNAERLSDVIAFPVNIA 325
2 -144.000IDP01693 gene: yjeA; lysyl-tRNA synthetase [Salmonella typhimurium LT2] STM4344 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  84  1MSETATWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGINLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEIDPLSADKTQLREAAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKEKPTFIYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQQPIDQNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIAFTVDRA 325
3 -98.000IDP90685 gene: lysS; lysyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0401 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  31  168.........VEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMM-HPIAGGANAKPFVTF----HNSLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHNYKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLIEDKEKELGHLQAELFDNYVEEKL--INPTFVIDFPISISPLSRRSDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDFVNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMR. 491
4 -97.200IDP02443 gene: lysS; lysyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo0228 [Listeria monocytogenes EGD-e]  ali follow..  30  172.........EESQNRFVMRSKILKYTRDYMDNQGFLEVETPVL-HTIAGGAAAKPFITH----HNALDMELYLRIALELHLKRLIVGGMDKVYEIGRVFRNEGTSTRHNPEFTMLESYAAYEDYEDVMDLVEGLVSTVCKQVNGTTEITYGEYKVDLTPNWRRIHMADAVKEYVGVDFWNVTSDEETYGHILNEFFETYVEEKL--IQPTFVYGHPVEISPLAKKNKEDERFTDRFELFIVGREHANAFSELNDPIDQRERFEAQMKEREQGNDEAHGMDADFLEALEYGLPPTGGLGIGIDRLVMLLTDAPSIRDILLFPTMK. 495
5 -97.000IDP90889 gene: lysS; lysyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC0664 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  30  179.........ENSRNAFIVRSKVMSAIRNFMISKQFMEVETPMM-HVIPGGASARPFITH----HNALDMPMYLRIAPELYLKRLVVGGFDRVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKDLMDLTEELLSSVALEVLGSTSMPYGEHTVEFGGKYARMSMFDAIKHYNPNHAQIQALTEETCGQLLEEIFGETAEPKL--MQPTFITGYPADISPLARRSDDNPFFTDRFEFFIGGREVANGFSELNDAEDQDARFKAQVEAKESGDDEAMFYDADYITALEHGLPPTAGQGIGIDRLVMLLTNTHTIRDVILFPAMR. 509
6 -96.700IDP06319 gene: lysS; lysyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] NP_345214 [Streptococcus pneumoniae TIGR4]  ali follow..  28  167.........RESFERFVTRSKIISEIRRYLDQKGFLEVETPVL-HNEAGGAAARPFITH----HNAQNIDMVLRIATELHLKRLIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQAYADFQDIMDLTEGIIQHAAKSVKGDGPVNYQGTEIKINEPFKRVHMVDAIREITGVDFWQDMTLEEEVGHIINAFFEEFVEETL--IQPTFVYGHPVAVSPLAKKNPEDQRFTDRFELFIMTKEYGNAFTELNDPIDQLSRFEAQAKAKELGDDEATGIDYDYIEALEYGMPPTGGLGIGIDRLCMLLTDTTTIRDVLLFPTMK. 491
7 -96.600IDP90947 gene: lysS; lysyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] SAR0518 [Staphylococcus aureus subsp. aureus MRSA252]  ali follow..  31  170.........EDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMM-HQIAGGAAARPFVTH----HNALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYHDIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDEEKYGHILNEFFEQKVEETL--IQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLAEKAQGNDEAHEMDEDYIEALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMR. 493
8 -96.500IDP90637 gene: lysS; lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0888 [Yersinia pestis CO92]  ali follow..  27  178.........DESRHTFKVRSQVMSGIRSFMVEKGFMEVETPMM-QVIPGGASARPFVTH----HNALDIDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMELYMAYADYKDLIVLTEELFRTLTETILGSSVVQYGEQTFDFGKPFAKLTMKEAICKYRPETNVADLDDMDGLGRIQCEIFEETAESHL--IQPTFITEYPAEVSPLARRNDDNPFITDRFEFFIGGREIGNGFSELNDAEDQAQRFADQVSAKEAGDDEAMFYDEDYITALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMR. 502
9 -96.500IDP06134 gene: lysS; lysyl-tRNA synthetase [Helicobacter pylori J99] NP_222891 [Helicobacter pylori J99]  ali follow..  29  167.........PGVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMM-HPIPGGANARPFITY----HNALEIERYLRIAPELYLKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDVISYLDALETIGGISKGILEKEDRLLAYLL-EQGIKVEPNLTHGKLLAEAFDHFVEHKL--INPTFVTEYPIEISPLARRNDSNPNIADRFELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHEMPPTAGQGIGIDRLVMLLTGAKSIKDVILFPAMR. 489
10 -96.400IDP04576 lysyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS0076 [Bacillus anthracis str. Sterne]  ali follow..  32  172.........MESRETFVTRSKIIREMRRYLDDNGYLEVETPMM-HAIAGGASARPFITH----HNALDMELYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVAHIAKQVLGTTTIQYGDYEINLEPEWTRLHMVDAIKEHSGADFWNPMSVEEEVGHIINEFFEQKVEDKL--IQPTFIYGHPVEISPLAKKNDEDPRFTDRFELFIVAREHANAFTELNDPIDQKERFEAQLKEREQGNDEAHMMDDDYIEALEYGMPPTGGLGIGIDRLVMLLTNAPSIRDVLLFPAMR. 495
11 -69.400IDP05333 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS2031 [Bacillus anthracis str. Sterne]  ali follow..  15  124.......RHERTTAIFKVKSTLVQSFSELLIENDFTRIFTPKIVSQ-GAEGGANVFKLPY------FQKEAYLAQSPQFYKQMMVAGGLERVFEIAPVYRAEHHNSRHLNEYISLDVELGFIDFHEVMQLETDVLRYMFQQVAKNCEKELQLLQIEVPVEIPKITLLEAQEILKSKYCKESPVGDLD-TEGEKLLGKYVKETYK--SEFVFITHYPKEARPMTMPNNENSAITDSFDLLYKGLEITSGAQRIHNYEMLLDSFKEKGLHPDK--------FQSYLNTFRYGCPPHGGFGIGLERIVYKLLELSNVREASAFP.... 424
12 -69.100IDP90630 gene: aspS; aspartyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0640c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  21  132.......RNPKLYENFALRSKACIAARNSLANMGFLEVETPILTKATPEGA-----RDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCFRDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKDAMENYGSDKPDLRFDLKFIDVIDIFTKDPNALEFLWVVDFPMFEQN--DDGSYSAMHHPFTMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNI----DEEQQKEKFGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQR 554
13 -68.400IDP05209 gene: asnC; asparaginyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1494 [Staphylococcus aureus subsp. aureus COL]  ali follow..  13  122.......RSKKQHAVMKIRNEVIRATYEFFNKDGFTKVDPPILTAS-APEGTSELFHTKYF------DQDAFLSQSGQLYLEAAA-MAHGKVFSFGPTFRAEKSKTRHLIEFWMIEGEMAFTNHAESLEIQEQYVTHVVKSVLENCKLELKILERDTSKLEKVATPFPRISYDDAIELKAEGFDDIEWGEDFGAPHETAIANHYD--LPVFITNYPTKIKPFMQPNPENEETVLCADLIAGYGEIIGGSERVDDLELLEQRVKEHGLDEEA---------SYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLL. 425
14 -68.100IDP05239 gene: ansB; asparaginyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1896 [Listeria monocytogenes EGD-e]  ali follow..  17  122.......RSNRQHAIMKIRNEIIRASYEFFNKEGFLKIDPPILTGS-APEGTTELFHTKYF------EEDAFLSQSGQLY-MEAAAMAFGKVFSFGPTFRAEKSKTRHLIEFWMIEPEMAFYKLEDSLQVQENYVAFLVKAVLDNCRLELDRLGRDMVAPFPRITYTEAIERLHELG-----FDDIVWGDDFGAPHETAIADSFE--KPVFITHYPKAIKPFMPEDPENDQVVLCADMI-----APEGYGEIIGGSERIHDLETLQARMEDFDLDQEAY-SWYLDLARYGSVPHSGFGLGLERTVAWISGTEHVRETIPFPRLL. 425
15 -65.700IDP05303 gene: aspS; aspartyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1685 [Staphylococcus aureus subsp. aureus COL]  ali follow..  22  136.......RRQELAQTFKMRHQITRSIRQYLDDEGFFDIETPVLTKSTPEGA-----RDYLVPSRVHDGEFYALPQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGPRMTYKEAMRRYTLLTLTGAEAGDLVMFVADKPNVVAQSLGALRVKLWPLLEYDEDAKRY--VAAHHPFTSPKEADIAKLGTAPEEAEANAYDIVLNGYELGGGSIRIHDGELQEKMFEVLGF----TKEQAQEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTAS 562
16 -65.500IDP90878 gene: aspS; aspartyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC1166 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20  130.......RRPEMSDRIKLRAKASSFVRRFLDTHGFLDIETPVLTKATPEGA-----RDYLVPSRVHKGSFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDIETSFMTAEQVRAVTEKMIREMWLELLNVDLGDFPIMPYSEAMRRFGSDKPDLRNPMELVDVADLLKDVDFK-VVDFPMFESDDEGNV--AAMHHPFTSPLNLSPEQLKANPEEALSNAYDMVLNGYEVGGGSVRIHNAEMQSAVFDILGI----TPEEQRLKFGFLLDALKFGTPPHAGLAFGLDRLVMLLCGTENIRDVIAFPKTTA 559
17 -64.900IDP05569 asparaginyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4454 [Bacillus anthracis str. Sterne]  ali follow..  19  127.......RTNAFSATFRVRSIAAFAIHQFFQERGFVHVHTPIITGS-DTEGAGEMFRVTTQDLNNVPGKETNLTVSGQLNAEAY-ALAFRDVYTFGPTFRAENSNTRHAAEFWMVEPEIAFAELGDVMNLTEDMLKYAMKYVLEHDKTVLERMNNVINSDFGRITYTEAIKVLQESGADFKYPVEWG-IDLQTEHERYLSEEIF--KRPVFVTDYPKDIKAFYMRLNDDGKTVAATDLLVPGIELIGGSQREERMDVLVDRIKELGMNEED--------YWWYLELRKYGGTKHAGFGLGFERFLMYITGMANIRDVIPFP.... 455
18 -63.300IDP90728 gene: asnC; asparaginyl-tRNA synthetase [Yersinia pestis CO92] YPO1412 [Yersinia pestis CO92]  ali follow..  17  130.......RTNLIGAVARVRHTLAQAIHRFFDENGYFWVSTPLITAS-DTEGAGEMFRVSTLDLENLPGKEAFLTVSGQLNGETY-ACALSKVYTFGPTFRAENSNTRHLAEFWMVEPEVAFASLDDVAGLAEKMLKYVFQAVLNEDKDAVDRLQRFVTSDFAQVDYTDAIEILLASGQKFENDVSWG-IDLSSEHERYLAEKHF--KAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDA-------RLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYVTGVQNVRDVIPFP.... 458
19 -63.000IDP90838 gene: aspS; aspartyl-tRNA synthetase [Yersinia pestis CO92] YPO2053 [Yersinia pestis CO92]  ali follow..  21  130.......RRPEMADRLKSRAKITSFVRRFMDDHGFLDIETPMLTKATPEGA-----RDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMSADQVREVMEKLVRELWQETKGVDLGDFPVMTFAEAMRRYGSDKPDLRNPLELVDVASLVKDVEFK-VVDFPMFEDDSEGGL--TAMHHPFTAPKDMSPEQLAAAPTTAIANAYDMVINGYEVGGGSVRIHRTEMQQTVFGILGI----TEDEQREKFGFLLDALKFGTPPHAGLAFGLDRLVMLLTGTDNIRDVIAFPKTTA 559
20 -62.600IDP90531 RecName: Full=Asparaginyl-tRNA synthetase; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS Q9KSF9 [Vibrio cholerae]  ali follow..  16  130.......RTNVIGAVARVRNCLAQAIHRFYHEQGYFWVSAPLITAS-DAEGAGEMFRVSTLDMENLPGKETFLTVSGQLNAEAY-ACAISKVYTFGPTFRAENSNTRHLAEFWMVEPEVAFADLNTVAKLAEDMLKYVFKAVLAENNEVIARLEQFVESDFAQVDYTDAIEILKNCGKTFEFPVEWG-IDLASEHERFLAEEHF--KAPVIVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEH-------MDWYRDLRRYGTVPHAGFGLGFERLVSYVTGMGNVRDVIPFP.... 458
21 -62.500IDP05234 gene: aspS; aspartyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1519 [Listeria monocytogenes EGD-e]  ali follow..  19  135.......RRPEMNNIFKMRHTVTRTFRNKLDALGFFDIETPYLTKSTPEGA-----RDYLVPSRVYPGNFYALPQSPQILKQLLMTAGFDKYYQIVRCFRDEDLRGDRQPEFTQIDLETSFLTKEEIQAITEDMLVDVVKEAKNPRMTYKEAMDRFADKADIVAASLGALRNKLGKDLNLINEEELAFLWVTDWPLFEYDEEAERYVSAHHPFTLPKEEDIPLLETDSSKVMAEAYDIVLNGYEIGGGSLRIYKKEVQESMFRALGF----TDESAKEQFGFLMDALEYGTPPHGGIALGLDRIVMILAGRNNLRDTIAFPKTGS 561
22 -61.500IDP04615 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4297 [Bacillus anthracis str. Sterne]  ali follow..  19  135.......RRPVMFNTFKMRHDVTKTIRNFLDTEEFLEVETPILTKSTPEGA-----RDYLVPSRVHDGEFYALPQSPQLFKQLLMVGGFERYYQVARCFRDEDLRADRQPEFTQIDIEASFLTQDEILDMMERMMTKVMKDAKGVEVTAGDLLLFVADKKSVVADSLGALRLRLGKELELIDESKFNFLWVTDWPLLEYDEDADRYFAAHHPFTMPFREDVELLETAPEKARAQAYDLVLNGYELGGGSLRIYERDVQEKMFKALGF----SQEEAQEQFGFLLEAFEYGTPPHGGIALGLDRLVMLLAGRTNLRDTIAFPKTAS 561
23 -13.500IDP90766 gene: hisS; histidyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0765c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  1MINALKGMKDLLDKDAYYYEKVIKICEEVAKNYGFTFINTPHLELC-SVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEK--RWFYYGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQLNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHLLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAEFISDEIGAKAAIAGGGRY------------------DRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQ......... 319
24 -13.100IDP04618 phenylalanyl-tRNA synthetase subunit alpha [Bacillus anthracis str. Sterne] BAS4456 [Bacillus anthracis str. Sterne]  ali follow..  15  111...................TAVVEQIEDVFIGMGYEVAEGTEVEKD-----NFEALNLPKDHPARDMQDTFYIRTHTSSVQARTMENNKEKIICPGKVYRRDDDDATHSHQFMQIEGLVIDKNIR--MSDLKGTLQVFVKKMFGEDREIR-----------------------------------------LRPSFFPFTEPSV---------EMDISCMMCHGKGCGTCKGTGWIEILGAGM-----------------------------------VHPNVLEMAGYDSKEYQGFGMGAERIAMLKYGVDDIRHF........ 330
25 -12.900IDP05687 gene: hisS; histidyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1520 [Listeria monocytogenes EGD-e]  ali follow..  13  15.............EEVSKWHFLETEFKNVCENYQYEEIRTPVFEHT-GVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEH--KMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLTNIKLV------INSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNP-LIQSAPSILDFLNEESVAYFENVKNY--FEIDPTMVRGLDYYNHTT-----FEIMSVEEGFGAKTTL---HGLVREFGGPDTPGMGFGIGVERILLALEKAD............. 321
26 -12.900IDP05680 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1221 [Listeria monocytogenes EGD-e]  ali follow..  13  111...................TQVIEEMEDMFIGMGYEIAEGPEVELD-----NFEALNLPKDHPARDMQDSFYITENTLLRTQTSPVQAR-KVICPGKVYRRDNDDATHSHQFTQIEGLVVGENIT--FADLKGTLTVLAKTMFGEEREIR-----------------------------------------LRPSFFPFTEPSV---------EMDISCFKCGGKGCRVCKGTGWIEILGSGM-----------------------------------VHPNVLEMSGIDSTRYSGFGLGPERVAMLKYAVDDIRHL........ 331
27 -12.700IDP90816 gene: hisS; histidyl-tRNA synthetase [Yersinia pestis CO92] YPO2878 [Yersinia pestis CO92]  ali follow..  14  17.............ADTAIWQRIESILKQVLSGYGYSEIRMPIVEQT-AIGEVTDVVEKEMYTFDDRNGESLTLRPEGTAGCVRAGIEH--RLWYIGPMFRYERPQKGRYRQF-----HQLGAEVFGLPGPDIDAELILLTARWWRALGIFEHVKLELNSIGSLAARADYREALVAFLEQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQ-LLDDAPKLSDYLDEESKQHFAGLCEL--YTVNERLVRGLDYYNRTVFEWVTHSLGAQGTVCAGGR-----DGLVEQLGGRATPAVGFAMGLERLVLLVQAVN............. 320
28 -12.400IDP90628 gene: hisS; histidyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC0760 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  17.............TQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMT-AIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRSGIEN--RLWYMGPMFRHERPQKGRYRQF-----HQCGVEVFGLDGPDVDAELIMMTARLWRELGIAQHVRLELNSIGSLEARANYRTALIDYLEQYQNVLDEDCKRRMYTNPLRVLDSKNPDVQA-ILGDAPQLSDYLDAESKQHFAGLCEL--YTVNQRLVRGLDYYNRTVFEWITESLGSQGTVCGGGR-----DGLVEQLGGKPTPAVGFAMGLERLVLMMETLGNTDV......... 324
29 -10.800IDP90652 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0897c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  16  103...................MSTMDKIIEYFIALNFSIEKGPLIEDD-----NFEALNLPKSHPARDMQDTFYFRTQTSPVQIRTMLAQKPRMIAPGAVFRRD-FDITHTPMFHQVEGLVVEEGQKVSFANLKSVLEDFLRYMFGDVKV-------------------------------------------FRPSFFPFTEPSA---------EVDISCVFCKGKGCRVCKHTGWLEVLGCGI-----------------------------------VDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSL........ 318
30 -10.700IDP90648 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC1219 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  110...................TRTIERIESFFGELGFTVESGPEIEDD-----NFDALNIAADHPARTDHDTFFFRTHTSGVQIRTLEERQPRFIAPGRVYRND-YDQTHTPMFHQVEGMLVNVNFAQLKGILHDFLCNFFEEDL--------------------------------------------------------------------------------------------------EVRFRPSYFPFTEPSAEVDVKGKNGKWLEVLGCGM--VHPNVLRSVGIDPEKYSGFGMGVERLTMLRYGVNDLRAFF....... 316
31 -10.500IDP90931 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Salmonella typhimurium LT2] STM1337 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  20  110...................TRTIDRIESFFGELGFTVATGPEIEDD-----NFDALNIPGHHPARADHDTFWFRTQTSGVQIRTMKAQQPRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNIS--FTNLKGTLHDFLRNFFEEDLQIR---------------------------------------------------------RPSY---FPFTEPSA--------------EVDVM----NGKWLEVLGCGMVHPNV-----------LRNVGIDPEIYSGFAFGM--------GMERLTMLRYGVTDLRSFF....... 316
32 -10.300IDP92038 phenylalanyl tRNA synthetase isoform, putative [Toxoplasma gondii ME49] TGME49_034500 [Toxoplasma gondii ME49]  ali follow..  12  260...................MQVMKQFKQILYCMGFEEMPTNQYVESS----CFDSLFMPQQHPARDVQDTFFLQESMGNILRTHTTA---KFFSIDRVFRNETLDATHLAEFHQVEGLVADRGLT--IGHLMGVMETFYKQIGIEQLKFKPAY-------------------------------------------------------------NP--TEPSMEIFGYHAGLKRWIEVGNSGI-----------------------------------FRPEMLLPM--GLPE--AWGLSLERPTMIRYGISNIRQL........ 515
33 -10.300IDP06044 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Helicobacter pylori J99] NP_223695 [Helicobacter pylori J99]  ali follow..  13  102...................NYTKNKIIEFFTPLGYKLEIGSLVEDD-----NFSALNLPPYHPARDMQDTFYFRTHTSPVQIHTMQEQTPKMICLGETFRCD-YDLTHTPMFHQIEGLVVDQKG-NIRFTHLKGVIEDFLHYFFGGVKLR-----------------------------------------WRSSFFPFTEPSA---------EVDISCVFCKQEGCRVCSHTGWLEVLGCGM-----------------------------------VNNAVFEAIGYENVSGFAFGMGIERLAMLTCQINDLRSF........ 317
34 -9.920IDP90840 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Shigella flexneri 2a str. 2457T] S1634 [Shigella flexneri 2a str. 2457T]  ali follow..  19  110...................TRTIDRIESFFGELGFTVATGPEIEDD-----NFDALNIPGHHPARADHDTFWLRTQTSGVQIRTMKAQQPRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNIS--FTNLKGTLHDFLRNFFEEDLQIR-----------------------------------------FRPSYFPFTEPSAEVDVMGKNGKW--------------------LEVLGCGM-----------------------------------VHPNVLRNVSIDPEVYSGFGMGMERLTMLRYGVTDLRSFF....... 316
35 -9.460IDP90756 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Yersinia pestis CO92] YPO2429 [Yersinia pestis CO92]  ali follow..  20  110...................TRTIERIETFFGELGFSVESGPEIEDD-----NFDALNIPAHHPARADHDTFWFRTQTSGVQIRTMQEQQPRIIVPGRVYRND-YDQTHTPMFHQMEGLIVDRDIS--FTNLKGTLHDFLRNFFEEDLQIR---------------------------------------------------------RPSY---FPFTEPSA--------------EVDVKWLEVLGC------------------------------VHPNVLRNVGIDPEIYSGFGMGMERLTMLRYGVTDLRAFF....... 316
36 -9.270IDP04603 prolyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS3670 [Bacillus anthracis str. Sterne]  ali follow..  14  47...............LKVLHKVERIVREEMERAGAVELLMPAMQAAELWQESWYSYGSELMRMKDRNAREFALGATHEEVITDLVRDEVKSLYQIQTKFRDERFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKAVLSDVGEDTIAYSDTSDYAANIEMAPVVATYTKSDEAEKELEKVATPDQKAIEEVSAFLNIEADKCIKEVNDVKVKNVYGASVVELASHEEVKELLNCEVGSLGPIGVNGDIEIIADHAVASIVNGCSGANEEGFHYVVFKLGTRYSEAMNATFLDENGYGIGVSRTVAAIAEQFNDENGLVWPKAVA 469
37 -9.210IDP06256 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Streptococcus pneumoniae TIGR4] NP_345929 [Streptococcus pneumoniae TIGR4]  ali follow..  10  8...................QEIILTLQQFWNDQDCMLMQAYDNEKGAG--------------------------TMSPYTFLRAIGPEPWNAAYVEPSRRADGRYGENPNRLYQHHQFQVVMKPSNIQELYLESLEKLGINPLEHDIRFVEDN-----------------------------------------------------------------------ENPSTGSAGLGWEVWLDGMEITQ-YFQQVGGLA----------------TGPVTAE----------------VTYGLERLASYIQEVDSVYDI........ 181
38 -9.080IDP90581 gene: proS; prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0543 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  48...............KRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKNKITSLYQIGLKFRDERFGLLRCREFLMKDGYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPKTIDSLAQFFKINAFYTIKAVVKKAIYEFIRGSDDLQEVKAQNTCSALELVDASEEELKKFKLGQKYSKAMNANFLDENGYGIGVSRLLAVAIEANHDEKGCIWNKTLA 472
39 -9.080IDP05650 gene: proS; hypothetical protein Cj0539 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0543 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  48...............KRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKNKITSLYQIGLKFRDERFGLLRCREFLMKDGYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPKTIDSLAQFFKINAFYTIKAVVKKAIYEFIRGSDDLQEVKAQNTCSALELVDASEEELKKFKLGQKYSKAMNANFLDENGYGIGVSRLLAVAIEANHDEKGCIWNKTLA 472
40 -9.040IDP90927 gene: proS; prolyl-tRNA synthetase [Yersinia pestis CO92] YPO1068 [Yersinia pestis CO92]  ali follow..  15  47...............VRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRGEINSFFQIQTKFRDERFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTAVLAESGEDDIVFSTGSDYAANIEFAEALAPTEPRAPATEELRIVDTPNPIEKTVKTLLVHAHEESGHKLVALLVRGDHDLNEIKAEKLPQVDHSVAVMSDFGAGANIDGKHYFGINWERDLALPLVADLRNVVEGD-HIFQLGTKYSEVMKATVQGEDGYGIGVSRVVAAAIEQNHDDRGIIWPDAIA 472
41 -9.030IDP90551 prolyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC0875 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  47...............LRVLRKVENIVRQEIDNAGAIETLMPVVQPFELWEETSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRNEVSSLYQIQTKFRDERFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVAVLAESGEDLIAFSTESDYAANIEKAEAVAPAIERPAPTQAMTLVDTPNAKTIAELVEQHGLPIEKTVKTLFVKASDEIDAPIVALIIRGDHDRTVAVMNDFGAGANIDGKHYFGINWGRDVELGKVEDLRNVVEGDPHIFQLGTNYSEKMNCGVLDSNGYGIGVSRVVAAAIEQNHDDYGIIWPDAIA 472
42 -9.020IDP05337 gene: proS; prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1282 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  47...............TRVLNNITAIVRQEMERIDSVEILMPALQQAELWEESWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRNELKSLFQIQSKFRDERFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQAALSAIGEDTIVYSKESDYAANIEKAEVVYEPNHKHTTVQPLEKIETPNVKTAQELADFLGRPVDEIVGSLGPVIDKEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNDFRFILEGEKLSDGSGAAHFAEGIEVFKLGTKYSESMNATFLDNQGYGIGISRTLSAIVEQNHDDNGIVWPKSVT 468

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.