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Query: IDP05326 gene: murI; glutamate racemase [Clostridium difficile 630] CD3562 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNNKPIGVFDSGLGGLTVLKEIMKILPNEDIIYFGDTARIPYGSRSKETIIKYTFQAINFLKTKGVKAIVIACNTATARSLKEAQEKYDIPIIGVIEAGARTAVSSTKNKIVGIIGTEGTISSKAYNLEISKIDESIEIVNKACPLFVPIVEEGWANTEVAKLTAKIYLQELKEKNIDSLVLGCTHYPILKRTIGEEVGEHIKLVNPAKETAKDLKKILEVQNIINNTEIHGTYQYYVSDIPEKFSDIAREFLKKKIDKIQKVEIQKYLast
1 -97.500IDP05326 gene: murI; glutamate racemase [Clostridium difficile 630] CD3562 [Peptoclostridium difficile 630]  ali  100  1MNNKPIGVFDSGLGGLTVLKEIMKILPNEDIIYFGDTARIPYGSRSKETIIKYTFQAINFLKTKGVKAIVIACNTATARSLKEAQEKYDIPIIGVIEAGARTAVSSTKNKIVGIIGTEGTISSKAYNLEISKIDESIEIVNKACPLFVPIVEEGWANTEVAKLTAKIYLQELKEKNIDSLVLGCTHYPILKRTIGEEVGEHIKLVNPAKETAKDLKKILEVQNIINNTEIHGTYQYYVSDIPEKFSDIAREFLKKKIDKIQKVEIQKY 268
2 -95.400IDP00347 gene: racE; hypothetical protein lmo1237 lmo1237 [Listeria monocytogenes EGD-e]  ali follow..  40  2..KQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK. 266
3 -95.000IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames]  ali follow..  40  3.LNRAIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTILYHSKMLNEGEEQSDHLFLTTGKIGLFKEIASKWFGQPIENVKHIHLEK. 268
4 -92.000IDP06272 glutamate racemase [Streptococcus pneumoniae TIGR4] NP_346313 [Streptococcus pneumoniae TIGR4]  ali follow..  41  1MDNRPIGFLDSGVGGLTVVRELMRQLPHEEIVYIGDSARAPYGPRPAEQIREYTWQLVNFLLTKDVKMIVIACNTATAVVWEEIKAQLDIPVLGVILPGASAAIKSSQGGKIGVIGTPMTVQSDIYRQKIHDLDPDLQVESLACPKFAPLVESGALSTSVTKKVVYETLRPLVG-KVDSLILGCTHYPLLRPIIQNVMGPKVQLIDSGAECVRDISVLLNYFEINRGRAGPLHHRFYTTASSQSFAQIGEEWLEKEI-HVEHVEL... 264
5 -91.100IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames]  ali follow..  39  6.KHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTILQHKGILADNL-NPKHRFFTTGSVSSFEHIAERWLGYQI-SVDCVDLPV. 269
6 -90.200IDP00335 gene: murI; glutamate racemase FTT1197c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  45  2LDNRPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAAIPVIDVITAGVSLV---DNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILD--VKLIDPSLQASKMLYSLLFENKLLNTTKSNPEYRFYVTDIPLKFRSVGEMFLQTEMQHLEIVSLDSY 265
7 -87.900IDP00309 gene: murI; glutamate racemase CBU_0298 [Coxiella burnetii RSA 493]  ali follow..  43  3.NGRPIGVFDSGMGGLTVLRELVNHLPNESYIYLGDTARLPYGTKSPETVSRYATQMASILIAQNIKLLVVACNTASTAALPQLQQQFSIPIIGVVEPGARAAVVATKNNKVALLATETTIQSGIYQNTLRALSPQIEITTQTCGLFVALAEEGCTNDEIALLVAKKYLEPIINHQCDSVILGCTHFPVLMEPLAAILGDQINIINSAKATATEVQSILQKNNPTPLDH-PPTLSFLVTDSPERFTRIGEIFFGRGI-DAKKVHLID. 269
8 -86.800IDP00328 gene: murI; glutamate racemase Cj1652c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  35  2....KIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKADKNKEILVIATKATIKSEEYQKRLLS-QGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNI--TTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKEREN----IDLKNHKAKLHFYASSDVESLKNTAKIWLN.............. 246
9 -83.400IDP01362 glutamate racemase VC0158 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  26  5.SFPRVLIFDSGVGGLSVYREIEARLPQLNYIYLFDNAAYPYGELTQETLIARVDTLVTRMVEQRIDLVVIACNTASTIVLPVLRAKLTIPVVGVVPAIKPASL--IASKAIGLIATPATVKRQYTQELIRDFSANKNVELLGSTRLVNMAEEKLRGKPLDLEELASILQPL-KNTIDVAVLGCTHFPLIKEEIQQVLGEQVQLIDSGLAIARRVQELLGIEQAVGA---KQKHRIYASAPPWEESALNIKLEQLGFNPVQPFLHP.. 264
10 -82.400IDP00597 gene: murI; glutamate racemase YPO3909 [Yersinia pestis CO92]  ali follow..  25  24.PRPTALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHLAIVVIACNTASTVSLPALRERFAFPVVGVV-PAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWMREPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQENVISSDENIAYCMALDEDTDALLPVLQSYGFPKLQKLP....... 286
11 -26.100IDP02135 putative aspartate racemase [Salmonella typhimurium LT2] STM4510 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  2..KHTIGI----LGGMGMLEKFVELRHASC-LIVSSIPDIP--LSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYW-FDDLQNVAKARMISILDATLGDI--PPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIA--CPMIDSTASLVRAAIRWYESWP............................................. 230
12 -24.400IDP00877 gene: ygeA; putative racemase STM3015 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  2...KTIGL----LGGMSINEGIKQQLGGLHSSLLLHSVDFH--RDEWDKAGDILAQAAHGLQQAGAEGIVLCTNTMHKI-AHVIESRCSLPFLHIADATGR-AIARQGLHRVALLGTRYTMEQDFYRGRLEQIVPEADDRARINQVIFDELCQGTF-TDASRHYYLQVIEQLAAQGAQGVIFGCTEIGLLVPQTQS----ALPVFDTTAIHAADAVSFMLSSS............................................. 232
13 -24.000IDP04122 putative aspartate/glutamate racemase [Yersinia pestis CO92] YPO2758 [Yersinia pestis CO92]  ali follow..  14  3...KILGL----IGGMSINQHVKAQLGGLHSKIILYSVDFH--KGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKV-ADDIEAACGLPLLHIADATAV-QIKQQGIDKIGLLGTRYTMEQGFYRGRIEVITPDDTDREAVNRIIYEELCLGIIS-ETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQDA----SVPVFDTTAIHASAAADYALQ............................................... 231
14 -9.620IDP00957 gene: ycfH; predicted metallodependent hydrolase STM1202 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  64.....CGVHPLNQDEAYDVEELRLLAAEDDVVAMGETGLDYFYTPETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFISFSGIVNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELA....................................................................................... 243
15 -9.250IDP01786 hydrolase, putative [Coxiella burnetii RSA 493] CBU_0502 [Coxiella burnetii RSA 493]  ali follow..  15  33.....VGLHPSEKVDHE-VQELVEVANHPKVVAIGETGLDYYYNHSELGKMRDRFRCHVQAALKLKKPLIIHSRSAQTDTIQIMQEENAQSVGGVMHCFTESWEMAEQAMKLGFISFSGIVNAKNVAEVAKKVPLEKMLIETDAPYLAPVPYRGKKNEPQYIPYVAERIAELKNIPLNEVA....................................................................................... 213
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.