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Query: IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKRWNSVFKLVLMVTAILGLSLYVTTSQGVEVRAESITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLTEAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDKMPAEDITLYAQFTINSYTATFDIDGKLTTQKVTYQSLLEEPVAPTKDGYTFTGWYDAKTGGTKWDFATGKMPAGNITLYAQFTKNDNPNPDDPTTNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRKTIKVKLast
1 -86.300IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali  100  1MKKRWNSVFKLVLMVTAILGLSLYVTTSQGVEVRAESITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLTEAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDKMPAEDITLYAQFTINSYTATFDIDGKLTTQKVTYQSLLEEPVAPTKDGYTFTGWYDAKTGGTKWDFATGKMPAGNITLYAQFTKNDNPNPDDPTTNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRKTIKVK 548
2 -63.000IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  36  51..TALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPINLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNGYTFKGWYDAKTGGDKWDFATSKMPAKNITLYAQYSANSYTATFDVDGKSTTQAVDYQGLLKEPKAPTKAGYTFKGWYDEKTDGKKWDFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPYNSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKKARASK 800
3 -60.500IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  44  2..KRNKTALRILVTLAVVLAITF-WVGMSSKEVQAAVIEHPTPINEIFTDPVLTDNVKTLLGKADVTDEVTQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLKDVSALAGLKNLKTMDLIYTDITDVTPLAGLSNLQVLNLDINQITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIAPDTISDNGTY-------------TSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVDGEQTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDITLYAKFTENEEPNASSPINVEPNDNNSDN----------------------------------AEPNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITGDKLNVLPIFVGAVLIGIGLVLFRKKRQTK 499
4 -57.200IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  20  1MKKTIKITTSLLLSFACVFSIGDFTKPHTVEAEIVYSLTNPKPVNEIFTDPKLAQVVADWLKLPAATSSVTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFGYGNQVSDLGPLSNLTKLEVIQMPRNQISDLTPIANLTALMSLDFEFNNLQTIEPIKNLTNMLELNVSANPISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTLETLTLSFNQIIDISPLKNLTNLTRLELENQTRALDAVEIDNPLILPAPVIDENGSRVQPSKVSHAGVYANGEITWEGLQSNYILNYEYALPVTIGSLTTTYSGKITQPLLEKPVDPVTPVDPVDPVDPVDPVDPVDPVDPVDPVDPDPVDPVDPVNPVDPVDPVDPVDPVDPVN----------PVDPVNPVNPDPVNPMKPVEPIIPVTLENQFTLVNQTISVNEEIATQPAKDIVKLPKTGESGMTSSLFGGLILTVTSAILLRKRK... 539
5 -57.000IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  41  1............................................................MKQRKTSVLHVLLVVTAILGISL------WVNASHGMKAQAESIAQPAPINEIFTDPALADEVKTELGKTSVTDEVTQTDLNQITKLEADDKGINSIEGIQYLTNLNMLGVSSNQITNITPLANLTNLDSLYLGDNKISDVTPLSGLTQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQISDASPLVNMTDLTVLHLEKQQITAAPVVYQTNLVAPDILKNAYGEVVPPTTISNNGTFASPNITWNLSEVSYDFNQKITLGDNGKVTFAGTVVQPIVEAPVNYITTFDVDGTTTTENVVVDTLITEPAEPTKEGYTFSGWYDAETGGNEWDFAVDKMPATNMTLYAQFTINSYTATFDVDGETTNQKVDYQALLQEPTAPTKDGYTFVGWYDAKTGGTEWDFATSKMPTSDITLYARFTKNPSSDNSQTDDKNDKDKLTIKANDSADATSTKLPKTSDDSSMIPTILGTLFIGGAILILRKKTT.. 488
6 -54.600IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  21  2..KKMGVKIGLCILLIMPFTISF----SANVSAEENISIKAAQDVVNIPDPALKSYLNGLLGQPSTSDIT-EAQMDTITDVTISNASLTDLTGLDYAHNLTILHLTNTGVTDYSLVANIPSLTNLNISGSNLTTIPDLNGLTNVTNLNLSSGKLDALTKFNKLPNLTFLNLDNNSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQNVGSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYLFTTNTASSSTYFTLNGVQISGSRLSIITKDFFDSITKMEYNAFYDNPAGSYNSPPNFNSYSVSSGTYDHYFDIDHSLTITNDSAISYGEQ-----TTVTEEQFLKDVHAETDDGTPVTSDFNTIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVG-SADGLNADPVIILVNVVAGNEPNINPNPDNGQSAKSEIASNPSNSEVNIALPNTGDASQATTVLIGIILAGVAILFFRKRKHS. 589
7 -54.100IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  17  223..EYMENLERITIQGSDVRNIAP----ISQLKRLKVVDLSFNKIENVEPLVNLEKLDILELQNNRIADVTPLSQLKKVRTINLSGNKISDIKPLYNVSSLRKLYVSNNKITDFTGIEQLNKLGTLGVGSNGLVNIEPISQMSGIVELNLEKNDIKDITSLSKLTGLQSLNLEENYVSDVSSLSNLINLYELKLATNEIRDIRPIQELGKRIKIDAQRQKITDFSGLEFMTNVEELTLQNVNMKNAEFISSLRNLKSVDLSYNQIEDIKPLHSLEDLEKLNVSDNGIKNVPELFMQKLKTLDLSNNKLDNADGIHQLENLDALLVNNNEINNLDEISKVSKLNKLEMMSNKVRDISPLASLKNLQWLNLSDNKIQDISTLSSMLDLLSLKLAGNEIRDVRPVIQLAQWITVDIKNQKIV.................................................................................................................................. 763
8 -53.100IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  19  28..SPSADNNLQVAPPAAIKDLFPDPAANEVLKSLNLKKLNKKSTSDTVTQTELNSLTGFQAINKGIKSIEGVEYLQNITELDVEKNQITDIAPVANLKKLTTLLINTNQITDISPVADLANLTTFYCGNNPISDISAVQNLTKLSIFNCYTANVEDISPVKNLVNLKTLSLGSNNIHDISDIEKLTALEYLSFSNNPVENPEVIGNLTNLNTLWLYNAQIRNIDFTANLPKLKSVYLYNNQISNISEVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQIITNREIPFQKNISIENKVMDNFGNIVTPNNISDNGTYNINATYSGTVIQPLTKDSTRPIITADGKVSYPTTKTTTEFLTDIHATTDDGSPIEVDLNALDFGTAGSYTVTLTAVDTAGNEATPVDVTIIITSVDTTKTAAEFLTDIHATTDDGSPIEVDLNAVDFGTAGSYTVTLNAVDTAGNEATPIQVTIIITNSEIPLSIIPKDNIEKTNSINVIKMIETNEIKNKMLPKTGDKLPL-TVFLGMLITLAGISYLRK..... 646
9 -52.800IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  25  1.......MKEKHNPRRKYCLISGLAIIGNGAKVQAETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKAVNLTRYVKYIRG............................................................................................................................................... 408
10 -52.600IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  18  1..........MFLNTNEILDYSA----LKYMPNLKSLTVANAKIKDPSFFANLKQLNHLALRGNEFSDVTPLVKMDHLDSLDLSNNKITNVAPLIEMKNVKSLYLSGNQIEDVTALAKMEQLDYLNLANNKITNVAPLSALKNVTYLTLAGNQIEDIKPLYSL-PLTDLVLTRNKVKDLSGIEQMKQLEELWIGKNEIKDVTPLSKMTQLKQLHLPNNELKDITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANEIRDVRPVIELSKTAYINVQNQKVFLEETENKEVKVPIYEKDGKISTKIRLKGEGGTYSNDAVKWSTPGEKVYEFGVPFADTGIFFTGSVIQNVVESKADNTSKEDNTSKEDAKVEVVEFKDVPKGHWSEEAIHYLAKENIFKGYGNGQFGFGD.................................................................................................................................... 404
11 -52.000IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  13  1MSVKIGVCFAVLAVPVSQTTLPV----FAAEQPGLKASQDNVNIPD----STFKAYLNGLLGQASTANI-TEAQMDSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSIPNLSGLTNLTLLDLSHSAHDDLTKINTLPKVTSIDLSYNAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERTVNYDGYVPDFVKSTASSDTYFT------NEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQFQNGGSYTSMPIYDHYFTVDHSLNITADSEKTYIENQLVTEATFLSDIHAKTDDGSTVTSDFADKVDFNVTIKAKTTITADEKITYKVDTSKTEAAFLADIKATTNDGTAITSDFATVVDLSKPGKTLNAENDLQKALPVQVMVIVEKETNVNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSLPVAGATVGFLLIGLSWFVSRKK.... 598
12 -51.600IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  15  364..KNLPNLVNITADSCAIEDLGT----LNNLPKLQTLVLSDNELTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITSISEITDLPRLSYLDVSVNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTSVIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNSLSDLTNLTELNLRNNVIDDISGLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNKIENISALSDLENLNKLVVSKNKIIDISPVANMVNRGAIVTASNQTY.................................................................................................................................. 786
13 -51.200IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  18  1MYKLVKLITTVFLPFSNVKAAPTDVVNIPDPVL-------NSGLKNIIGNPFLDEITEANMATITVADLSNMSGAPGYPVT----GLIKDLTGLDKAVNMTKLYFSNSQIKNLDKIKNLPNLKKIVAVTTGLNNISALGEMPALEEVELGGDYITDFTPLLEKENLTSFSYNSYAWSEFKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQFTNVAPIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNNNITDLSNLKNFFEAMVAQGDYEGLQINN.................................................................................................................................................................................................................................................................. 296
14 -50.600IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  18  1MKK---------ALKLFLATICM----FIMIYPSTAAHAEETNIVNI-PDANLKTYLNGLLKQASDAPIT-KTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKLFVDLNGLVNLQSLSINGSEVTHFKTFNKLPKLTYLYAQNSKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALATGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSIT------DDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVTSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKA-EPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS.. 605
15 -50.100IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  34  52..ADLAEGIRAELQKSSVTDVVT----KEELESISQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISDISPLQNLTNVTDLYLVDNDISDLRPLANLTQMYSLRLGGNSISDLNPVRNMTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITNISMLEDLTNLTSLGLQNNKISDISVLKNLTHVTYLQLGYNQIVDVKIIGLTNLTSLQLTQNHITDISPLANLTKIQYSDFSNQMITNLERNFSKTLSVPNNITSIDGTLIAPETTVTEENLIPEPTSPTKQGYTFDGWYDAETGGTKWDFTTGQMPANDLTLYAHFSVNSYQANFDIDGVVTNEAVVYDTLLNEPTTPTKQGYTFDGWYDAETGGNKWDFKTMKMPANDVAFYAHFTINN................................................................ 599
16 -47.900IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  15  1MMS--IKSNIMKIGVCSVMVLVPLSQTSLPSFAAEEIALKESQDVVNIPDPQLKKELNLYLNQAENADITE-AQMATFRNITL-NSGIKDLTGIEYLKNITTLSIN-NINASYEPIQTLSSLEKLVINGENVNAIPDLSVLSNLTFLDLSRTNIDDFSKISNIPNLNKLDISNNKITKISELNNLPSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGDSFETDGFKNIKSSELTFDANASIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVTNDKISINQITLSDFTQADFDELEAFEVYLGFDSGNISKPANLANGTYSLKQIGSYRAFSVDHSVNITAQDNISYIQNDTVTPEKFLTDIKADANGGTITSDLTDKVDFTKPGNYTVTLNAQNTVTIIEKTVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITSDFESAVDFTKAGETLNAENDTQKAAPLTVKIRVNPKLPDDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDSLPESGVLLGFLTLALGIVIRKK..... 593
17 -44.400IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  18  1MRKIPVVVSLALCFSLVSPSLYASADTNTPKNNLKSTSENSKTYAELFPDVNLAKIIAKNISGTEINAEVSEAELQTITNLVATNQNITSLTGIEHLTALENINVNNNELTTIDSLFNIPTLKSISANNNKITGFSLVKTLPELHTLEVLGNAITELD-IENQPNLVTLSADELELKKLTTLMNLPEIISVDISGNYLSDDIHLENLPAVKNLDISSNELTRLPKINDFPLLTTINVRSNKIDRLSKLVDVPKLATLNADKQAVTLSKTIAAGNFTIPNNVENLAGQMVTPKIISNNGTYSDQSIAWASGEVTDLYDEAIKMEVDLSEVDSSKLGTYEATIIAKSKSGASSDPIKLSVKIVDTEKPIIQINNPEIIIE-PGSYEVTIYTEDSSGNRSETVTITVKVPEARIGKITIQYMDSENNELAESNTITGEVGETYETLAEGYTLSGVFEETRQTIQYIYVKDIINPEFPVYSEN-SNNNNSVNGSRQTPSKSVKKQSKAYSKINQMPMNLPETGDSTNLLFIFMGVLLLAGLTLSKAKRKN.. 831
18 -43.200CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  45 1023...NLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKAIFNVKFHVDGKETTKEVEAGNLLTEPAKPVKEGHTFVGWFDAQTGGTKWNFSTDKMPTNDINLYAQFSINSYTATFDNDGVTTSQTVDYQGLLQEPTAPTKEGYTFKGWYDAKTGGDKWDFATSKMPAKNITLYAQYSANSYTAPGSDTSNTSTGNSASTTSTMNASKEASLPTTGDSDNALYLLLGLLAVGTAMALTKKARASK 1683
19 -41.300IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  19  1MKKVVLLFVLILAFIVPVYSKAV----ETGKEVPKSPELLDDKSSTLKNVNTPKNLKASPLANSTIADLFPDEGMAKTIANQLGRTENNN---------FQTPTKTDWKVDDVVTEVELNRMWYLTSV-ATIGSIEGIQYLPNLYDVRLQDKQCKDLSPFNGYSQLYRLNINNGNISDISPLTELSTLNDIDLGGNNISDLSLFPKLPNLEEISLERNNISDVSPLAKFTKIKIFNLDENHITDLSSLTKMPNLQRLYVRYQTLDMEPVVTSSKYEFSIQPSIFGTTKPVKIT............................................................................................................................................................................................................................................................... 300
20 -36.800IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  15  1.......MKTTKIVIASLVSLT-----MVSNPLLTFAATNDVIDNTTEPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD................................................................................................................................................................................................. 364
21 -33.900IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  18  36..KTENQLLKTDLKETPKEKTP-----NNNLKNQLVQAGTKTYNDYF-PDDNLAKEVAETMNKNADESVT-VEELAKVTKLDARSQGIEDSTGIEYLTGLEVLNLEDNQLKSID-VSKNLNLKELTCSNNPLANLD-VSKNLALEELTCENNELTQLD-VSQNTALEYLYCPRNQLTKLD-VSKNSALRYLACDVNQLTNLD-VSKNPALTNLGCTKNQLTDLD-VSQNPNLGTLVCSDNQLTNLD-VSQNQALENLACDNNELKNID-INQALSLKELSCENNQLTNLDTTQNLALEILYCDDNQLTDL----DVRKNVNLLILFCNNNQLTNLAVGETIAKVRCNNNQLKDVSSLPDY............................................................................................................................................................................................ 374
22 -33.000IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  17  1MKKILTGLSTTLLLTVLLLTI---TGGDLKAKAASDLYPLPAPIIDVFPDEGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETETITN-RAMFNNVNIVSVMEFGEDLTEFPDISTIPHLNTLFFNTPPEGVTPDYQNYPEMVTITMSGSNLIGIPDFTGMPDLSQLYMADMMITSDPDFHTIPKLSTLDLSHNQLTNLPDFQNLTNLAELNLSFNNLTNTTNFTNLSNLNNLNLDYNHLNELPSIIKQGETCTIQLP-FQLAEINMLVNPTVVEVVTTTNADTESITLDTSELSPGVYNFNVQFNDAYPITQ......................................................................................................................................................................................................................................... 355
23 -32.500IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  18  2..RKVLMFLSTALLLAILS--LSFTGLDLKAKAASDLYPLPAPIIDVFPDDGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETSTITN-AMFNNVTDVSIMEFGAKEFPDITTIPHLKTLFFADPPGRLTRNLPNYQNYPEMDTITMSGNNLISIPDFTGMPALKQLYMSEMLITSDELFNNIPLLITLDLSSNQLTTIPDFQNIPNLTFLDLNANLLTNTPDFQNLPKLTDLNLRHNNLTGTMVYTNLPSLESLNLDYNFLTELPS....................................................................................................................................................................................................................................................................................... 281
24 -30.000IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  20  17........................................PAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDPLPSLGLTGEDLSVL-NNEVFTNAIELAIWSNNIGELPDSEALPALENIEANGANITVF-PDANYPNLTNVDLSQNNFGFNPKFVGMEGLVSINMENAGLSGYDIWMNMPNLDSLILNENHLISIPEIFLSQQLGTHSFANQTATYPTTIKQGENLKVFVPFIYQALDFIAPS-NHDLIIIKDNGRTLYEPP........................................................................................................................................................................................................................................................................................ 253
25 -29.400IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  16  2.........KFPSIFNKIKPQS-----IQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRI-NCAFLSKQNDIDLSGLNLSTQ--PPGLQNFTSINLDNNQLTHFD-ATNYDRLVKLSLNSNTLESINHQGRNVSITHISMNNNCLRNID-IDRLSSITYFSAAHNKLEFVQ-LESCEWLQYLNLSHNQLTDIV-TGNKEELLLLDLSHNKLASLH-NALFPNLNTLLINNNLLSEIKMYSNFCKVQTLNAANNQLEKINLLTYLSSIKSLRLDNNKITRIDTENTSDIRSLFPIIKKSESLNFLN.......................................................................................................................................................................................................................................... 297
26 -27.800IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  12  2....KKKFVYLLLLVLFMTVLPFQMLEAQAASTSW---------QELDGNEPFIAETEKILSKNRQD--ITLADLETIQKIHV--FGADSINKISDYKNLTALEANYGTITEVPEVGSLKELVTLNVDENNLQEFMVIFQLPKLEVLYISRGNITEIPTITTLSHLKVLDVSNQKLVTIDSILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLEGDGYITIKSTLSTNSNPFAKVRVIKVTAPLKGADVTVQYLDSNG-----DTLATPDILSGNEGDAYASTPKTIDGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSVAAAPVTVKYLNEKILTASDNLTGNVDDPYQTKAKEFAGYTLDESKLPTNASGVFKTNAQTVTYVYKTIPASIKAHDSTMNVDTWSAKDNFDSAVDSLGVAVPFDEVKVDGSVDTTKAGVYPVTYSFAGDSVTIKVTVKATVVPAPPITPI-PNTPSTQQTPTKQSGTLKIKATHQEQPIVAGNLKLPTTGDNLWDSVLYFGFITVCLSFVLFFRLKKQK 624
27 -26.200IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  15  43........ASVDCHGLGLRAVPRGIP-----RNAERLDLDRNNITRIMDFAGLKNLRVLHLEDNQVSVIEAFQDLKQLERLRLNKNKLQVLLLFQSTPKLTRLDLSENQIQGIPRFRGITDVKNLQLDNNHISCIEAFRALRDLEILTLNNNNISRILSFNHMPKIRTLRLHSNHLYRGKGLMEIPGIVEIRLEQNSIKAIGAFTQYKKLKRIDISKNQISDIAPFQGLKSLTSLVLYGNKITEIAKFDGLVSLQLLLLNANKINCLRVFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLAD................................................................................................................................................................................................................................... 450
28 -23.300IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  18...KITSNTESTIKQHELVSDD---AIINELSSELVSCLGNDKFTPVEDCNLLNMLSEFKLLREQCFRWGNTLLFENYESYDKTGSITIEKQGEGTLPIRHKLEFISTNIAELTKITDALHSNELDLSYLFLGSVPPL--PDWIEMLSLVYNELDSIQ----PESCKELELDFNNLTEFPQV--PDGITLISVNNNLISHIDSF--PPKAKKIFISHNKLSETPAIPD--TAKVFDCGYNKIQEIRYF--PKNLKEARIGYNNIEVVPAI--PGNLKILFMECNPIKEA................................................................................................................................................................................................................................................................... 329
29 -23.300IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  18...KITSNTESTIKQHELVSDD---AIINELSSELVSCLGNDKFTPVEDSNLLNMLSEFKLLREQCFRWGNTLLFENYGAYDKTGSITIEKQGEGTLPIRHKLEFISTNIAELDKLTKITHSNELNLSSLSLGSVPPL--PEWIEMLSLVYNELDSIQ----PESCKELELDFNNLTEFPQV--PDGITLISVNNNLISYIDSF--PPKAKKIFICHNKLSEIPALPD--TAKVFDCSENNIKEIRWF--PKNLKEAYIEYNKIEVIPAI--PGNLKLLCMKCNPIKEA-FLMPWTLTGIRYEISQRKYIVMN........................................................................................................................................................................................................................................... 352
30 -23.100IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  21  1.......................................................................................MKKAFLCLSAIVLSLNFVWINPITGSASETTKETNQQVNLKNNVTDIVTSLGGQTWLNEVNRQLAPKT--LTFEDLAKITTISLNNRSLTG-PEIKNLVSLQRLYLFSNKLSG-AELGELTKLTELRLDYNELSGKIP-DGLGNISEIALQNNRLVGQIPLSNRTGKNEVNVSGNQVT........................................................................................................................................................................................................................................................................................... 191
31 -21.100IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  22  763......................................................NVGHLKLTFCSVGPAFVLQHLRRPVALQLDYNSVGDIG-LPCLGVCKALYLRDNNISDIECALHCEQLQKLALFNNKLTDAKLLACRQNFLALRLGNNYITAAEGLRGNTSLQFLGFWGNRVGDAEALGDHQSLRWLSLVGNNIGSALMLAKNVMLEELCLEENHLQDAEGLKKNSSLKILKLSNNCITYLQALERNDTILEVWLRGNTFSLEEVDKLGCRDTRLLL........................................................................................................................................................................................................................................................................... 1040
32 -19.500IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  11  129WNSYLNRIKHIEIEEATLTGNFSSYFRNNVFTVLESVRIERSNLSRVTSFALAEKVIIRDNNYPTAPSLLTTEGMSNLMEVDLSGLDTSAVTTMWDMRALEELDVSHFDTSSVTNMSYMRNLEVLDVSNLDTSSVTNMYAMTSLEELDVSHFDTSSVTDMYRVEKLKKLDVSNFDTSSATAMVQMSALEKLDVSNFNTSLVTDMRAMTSLEALDVSNFDTSSVTNMAAMEKVEKLDLSTFDTSSVTNMGTMTALKSLYLDNTHAASSTDMFTGTTSLSYLFVSHNVSNFN.................................................................................................................................................................................................................................................................. 461
33 -17.800IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  19  2.......................................................................................LKKIIALIALVVIINTVSFTSVSASTPTWLEQT----MNNNEPFIKEIE--------TETGKTRANITQTD----LEAITALRV--TGASDIANIDMLTHLTLLKAVQGTISSVNSVGNLKELKILNLNTNHLSNFPTVYQLPKLEELQLNDGTIEEIPA-NMASHLKFLTVNNNRLVKVP........................................................................................................................................................................................................................................................................................ 170
34 -14.000IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  3........................................PTSQLRPT-GTFCSYSAETSADIKSEITPIQIEEARASGRLYIKDCDIEYLPQL--PNEITSVTIENNNLTTLTGL--PVNTQNLSVINCEKLQITDMPS--TVKNLHIELTDSPFIHFIS--EGIECLTVCHCYISGVP-----ESVRYLEIKGSATDSIKNVPN--GLSSLSINSYNPENQARIDNSPSLKTLSLTGSNIILPEKL--PESVTSVTIHAEQ............................................................................................................................................................................................................................................................................................. 211
35 -10.800IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  10  163...........................................VEDASTASALKAVNYKILENRRISIIINSSAPPHTILNELKPEQVEQLKLI-----MSKRYDGSQQALDLKGLRSDPDLVAIDVVLNRRSCMAATLRIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSL--VLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFI........................................................................................................................................................................................................................................................................ 423
36 -9.530CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  11  163...........................................VEDASTASALKAVNYKILDRENISIIINSSAPPHTILNELKPEQVEQLKLI-----MSKRYDGSQQALDLKGLRSDPDLVAIDVVLNRRSCMAATLRIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSL--VLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIP.......................................................................................................................................................................................................................................................................... 421
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.