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Query: IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKMGVKIGLCILLIMPFTISFSANVSAEENISIKAAQDVVNIPDPALKSYLNGLLGQPSTSDITEAQMDTITDVTISNASLTDLTGLDYAHNLTILHLTNTGVTDYSLVANIPSLTNLNISGSNLTTNSIPDLNGLTNVTNLNLSSGKLDNSALTKFNKLPNLTFLNLDNNPSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQNVGSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYLFPFTTNTASSSTYFTLNGVQISGSRLSIDDTGVTVSGITKDFFDSITKMEYNAFYDNPAGSYNSPPNFNSYSVSSGTYDHYFDIDHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDDGTPVTSDFNTIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDTTKTEQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGLNADPVIILVNVVAGNEPPTPPGPGPDPTPDPTPNPNNPNINPNPDNGQSAKSEIASNPSNSEVNIALPNTGDASQATTVLIGIILAGVAILFFRKRKHSLast
1 -107.000IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali  100  1MKKMGVKIGLCILLIMPFTISFSANVSAEENISIKAAQDVVNIPDPALKSYLNGLLGQPSTSDITEAQMDTITDVTISNASLTDLTGLDYAHNLTILHLTNTGVTDYSLVANIPSLTNLNISGSNLTTNSIPDLNGLTNVTNLNLSSGKLDNSALTKFNKLPNLTFLNLDNNPSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQNVGSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYLFPFTTNTASSSTYFTLNGVQISGSRLSIDDTGVTVSGITKDFFDSITKMEYNAFYDNPAGSYNSPPNFNSYSVSSGTYDHYFDIDHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDDGTPVTSDFNTIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDTTKTEQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGLNADPVIILVNVVAGNEPPTPPGPGPDPTPDPTPNPNNPNINPNPDNGQSAKSEIASNPSNSEVNIALPNTGDASQATTVLIGIILAGVAILFFRKRKHS 589
2 -83.800IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  47  7IVKIGVCFAVLAVPVSQTTLPVFAAEQPGLKA----SQDNVNIPDSTFKAYLNGLLGQASTANITEAQMDSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSDKIPNLSGLTNLTLLDLSHSAHDDSILTKINTLPKVTSIDLSYNGAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERTVNYDGYVPDFVKSTASSDTYFTMNEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQFQSYTISMPIYDHYFTVDHSLNITADSEKTYIENQLVTEATFLSDIHAKTDDGSTVTSDFADKVDFNTPGTYTVTLQSENNAGLKATPVQVNVTIKAKTTITADEKITYKVDTSKTEAAFLADIKATTNDGTAITSDFATVVDLSKPGKYVVTLNAENDLQ-KALPVQVMVIVEKETPIPDPTPTPTPDPTPTPDPSPTPNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSLPVAGATVGFLLIGLSWFVSRKK... 598
3 -83.500IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  39  1MKKALKLF--------LATICMFIMIYPSTAAHAEETNIVN-IPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALATGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGF-NDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS. 605
4 -73.800IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  34  2..MSIKSNIMKIGVCSVMVLVPLSQTSAAEEIALKESQDVVNIPDPQLKKELNLYLNQAENADITEAQMATFRNITL-NSGIKDLTGIEYLKNITTLSIN-NINASYEPIQTLSSLEKLVINGENVNADIIPDLSVLSNLTFLDLSRTNIDDTIFSKISNIPNLNKLDISNNKGITKISELNNLPSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGDSFETDGFKNIKSSELTFDANASIVTVNTILNYDGLSLPYNTNPDYTSIALGD----QSYVVTNDKISINQQGITLSDFTQADFDELEAFEVYLGFDSGNISKPANLANGTYSLKQIGSYRAFSVDHSVNITAQDNISYIQNDTVTPEKFLTDIKADA-NGGTITSDLTDKVDFTKPGNYTVTLNAQNTKGLKGEPIQVTVTIIEKTVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITSDFESAVDFTKAGEYIVTLNAENDTQ-KAAPLTVKIRVNPKLPDPVVPIPYPDPTPDPTPDPTVPVPTPEDSTSDDGGSRNPRISISDSSLEKLPKTGDSLPESGVLLGFLTLALGIVIRKK.... 593
5 -55.200IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  18  81......................NTPKNNLKSTSENSKTYAELFPDVNLAKIIAKNISGTENAEVSEAELQTITNLVATNQNITSLTGIEHLTALENINVNNNELTTIDSLFNIPTLKSISANNNKITGN-FSLVKTLPELHTLEVLGNAITELDIENQPNLVTLKKLTLKNLSQLNGLGTLMNLPEIISVDISGNYLDSDIHLENLPAVKNLDISSNELTRLPKINDFPLLTTINVRSNKIDRLSKLVDVPKLATLNADKQAVTLSKTIAAGNFT-IPNNVENLAGQMVTPKIISNNGTYSDQSIAWASGELSGLSKVSYTFDEVINSPAIAGKYTGTVNQPIEVKAVPVIVADKSVSYAPVNAKDEATFLQDIRASASENAQITSDYSEVVDFATPGDYTVTLHAKNEFDLKADPVTVVVHINDIQIQINNPEIIIEKGSELTEGQIIDQVGITATDNYDQDLNIHMETLAKEIEGYTLKENPANSSGVFEETRQTIQYIYVKDIPEFPVYSENNVTPELPSNNNNSVNGSRQTPSKSVKKQSKAYSKINQMPMNLPETGDSTNLLFIFMGVLLLAGLTLSKAKRKNQ 832
6 -54.600IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  21  3.KRWNSVFKLVLMVTAILGLSLSQGVEVRAESITQPTAINVIFPDPALANAIKIAAGKSNVTDTVQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT--DVTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT--ITNQPVFYQNNLVVPNVVKGPSGAP---------IAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLTEAYTAVFDVDVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDKMPAEDITLYAQFTINSYTATFDIDGKLTTQKVTY--------QSLLEEPVAPTKDGYTFTGWYDAKTGGTKWD---------ATGKMPAGNITLYAQFTKNDNP---------------------NPDDPTTNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRKTIKV 547
7 -54.600IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  19  4NKTALRILVTLAVVLAITFWVGMSSKEVQAAVIEHPTPINEIFTDPVLTDNVKTLLGKADVTDETQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLKD--VSALAGLKNLKTMDLIYTDIT--DVTPLAGLSNLQVLNLDIN-QITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPN------------------------LSIVTLTNQTITNQPVFYQNKPIVPNVVTGL---SGELIAPDTISDNGTYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVDGE---------------------------------------------------------QTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDITLYAKFTEN------EEPNASSPINVEPNDNNSDNAEPNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITGDKLNVLPIFVGAVLIGIGLVLFRKKRQT 498
8 -52.700IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  26  1MKKILFLTLLLNGFVPNAHAKTESPSADNNLQVAPPAAIKDLFPDPAMKSLNLKKLNKKSTSDTTQTELNSLTGFQAINKGIKSIEGVEYLQNITELDVEKNQITDIAPVANLKKLTTLLINTNQITD--ISPVADLANLTTFYCGNNPIS--DISAVQNLTKLSIFNCYTA-NVEDISPVKNLVNLKTLSLGSNNIHDISDIEKLTALEYLSFSNNPVENPEVIGNLTNLNTLWLYNAQIRNIDFTANLPKLKSVYLYNNQ--ISNISEVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQSIENKVMDNFGNIVTPNNISDNGTYNSPTLSWNLNETKDNLSIITADGKVSYPEGTTKTTTEFLTDIHATTDDGSPIEVDLN-ALDFGTAGSYTVTLTAVDTAGNEATPVDVTIIITSKPVITADEKVSYPEGTTKTAAEFLTDIHATTDDGSPIEVDLN-AVDFGTAGSYTVTLNAVDTAGNEATPIQVTIIITPGGNDVKPEKPNEIIILPKDSEIPLSIIPKDNIEKTNSINVIKMIETNEIKNKMLPKTGDKLP-LTVFLGMLITLAGISYLRK.... 646
9 -49.800IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  17  50DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDTDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTEVEAGNLLTEPAKPVKEGHTFVGWFDAQTGGTKWNFSTDKMPTNDINLYAQFSINSYTATFDNDGVTTSQTVDYSTTQAVDYQGLLKEPKAPTKAGYTFKGWYDEKTDGKKWDFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNAYDPYNSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKKARAS 799
10 -47.800IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  15  2KKTIKITTSLLLSFACVFSIGDFTKPHTVEAEIVNPKPVNEIFTDPKLAQVVADWLKLPAATSSTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFGYGNQVSDLGPLSNLTKLEVIQMPRNQISD--LTPIANLTALMSLDFEFNNLQ--TIEPIKNLTNMLELNVSAN-PISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQ--VSDISSLATSTTLETLTLSFNQIIDISPLKNLTNLTRLELENQTR------------ALDAVEIDNPLILPAPVIDENGSRVQPSKVSHAGVYANGEIEGLQSNYILNYEYALPVTIGSLTTTYSGKITQPLLEKPVDPVTPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVD-------------------------------------PVDPVNPVDPVDPVDPVDPVDPVNPVDPVNPVNPDPVNPMKPVEPIIPVTLENQFTLVNQTISVNEEIATQPAKDIVKLPKTGESGMTSSLFGGLILTVTSAILLRKRK.. 539
11 -46.700IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  16  1.........MFLNTNEILDYSALKYMPNLKSLTVANAKIKDPSFFANLKQLNHLALRGNEFSDVTPVKMDHLDSLDLSNNKITNVAPLIEMKNVKSLYLSGNQIEDVTALAKMEQLDYLNLANNKITN--VAPLSALKNVTYLTLAGNQIE--DIKPLYSL-PLTDLVLTRN-KVKDLSGIEQMKQLEELWIGKNEIKDVTPLSKMTQLKQLHLPNNELKDITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANE--IRDVRPVIELSKTAYINVQNQKVFLEETEVNKEVKVPIYEKDGKISTKIRL.................................................................................................................................................................................................................................................................................. 299
12 -45.800IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  18  5WKVVLLFVLILAFIVPVYSKAVETGKEVPKSPELLDDKIADLFPDEGMAKTIANQLGRTENNNFTEVELNRMWYLTS-VATIGSIEGIQYLPNLYDVRLQDKQCKDLSPFNGYSQLYRLNINNGNISD--ISPLTELSTLNDIDLGGNNIS--DLSLFPKLPNLEEISLERN-NISDVSPLAKFTKIKIFNLDENHITDLSSLTNMPNLQRLYVRYQTLDMEPVVTSSKYEFSIQPSIFGTTKPVKITATKPKATIDPITSSAEEMAKKPFYYTPLFPGVTYSWDENFPLNGSNSLVDFRGTITQPLTYIE-----------------------------------PPQVVSYNSGLTYEIGTSLTEQQFLNDVNLITDQPTTITSDFDKLKNLNTVGIYWVAVKASNIEGNAEANIMVTIKY-KPPVITADAEYTYLVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNTAGDYVVTLTSPKSGYYEQDAIPVTVIVHVKELLELQIPDEFRMDIDANADSVPISDKKQTLKCYGSSGKAELEVIDRRTVRQ................................. 577
13 -44.600IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  15  1......MKEKHNPRRKYCLISGLAIIFSLWIIIGNGTPIKQIFSDDAFAETIKDNLKKKSVTDAVQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNINHQSNLVVPNTVKNTDGS--LVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQP................................................................................................................................................................................................................................................................................ 318
14 -44.300IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  13  524RQYMNKHNFERKNVNTPITKEDLLTVKALKITDGKKEGITDFSGLEFMTNVEELTLQNVNMKNAEFSSLRNLKSVDLSYNQIEDIKPLHSLEDLEKLNVSDNGIKNVPELFKMQKLKTLDLSNNKLDNAALDGIHQLENLDALLVNNNEIN--NLDEISKVSKLNKLEMMSN-KVRDISPLASLKNLQWLNLSDNKIQDISTLSSMLDLLSLKLAGNEIRDVRPVIQLAQWITVDIKNQKIVLEGQMNQEIQIPIYDLEGEIFEDIELKSTDGIVTDRGTVVWKTPGAKIYSFSLNGNYHGLSLL-----------------------------FSGTVTQNIVAKEEPKEPVEEVEGSKEEPIKEAEGSKEEPKEPAKEVEGSKEEPKEPAKEVEGSKEEVKEPAKEVEGPKEEVKEPTK------------EVEGPKEEVKEPTKEVEGPKEEVKEPMKEVEGSKEEVKGPT----EAEGSKEEVKEPTTEVEGSKEVKEPGKEVEGSKDAINQSAVAQETNVNNQVGKEKVVENQNMKENKPAVTKQEESKKSLGATGGQENTSTLLSGLVLSALSMFVFRKRLFK 1069
15 -44.200IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  21  1MYK---------------LVKIILALFLITTVFLPFSNVKAAIPDPVLNSGLKNIIGNPFLDEITEANMATITVADLSNGLIKDLTGLDKAVNMTKLYFSNSQIKNLDKIKNLPNLKKIVAVTTGLNN--ISALGEMPALEEVELGGDYIT--DFTPLLEKENLTSFSYNSYANNDEFKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQFTNVAPIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNNN--ITDLSNLKNFFEAMVAQGDYEGLQINNQTITLPTIN................................................................................................................................................................................................................................................................................................. 305
16 -44.000IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  15  1.................................MKQRKTSVLHVLLVVTAILGISLWVNASH-----GMKAQAESIAQPAPINEIFTDPALADEVKTELGKTSVTDEVTQTDLNQITKLEADDKGINS--IEGIQYLTNLNMLGVSSNQIT--NITPLANLTNLDSLYLGDN-KISDVTPLSGLTQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQISDASPLVNMTDLTVLHLEKQQITAAPVVYQTNL------------------------VAPDILKNAYGEVVPPTTISNNGTFASPNITWNLDSFTSEVSYDFNQKITLGDNGKVTFAGTVVQPIVEAPVNYITTFDVDGTTTTENVVVDTLITEPAEPTKEGYTFSGWYDAETGGNEWDFAVDKMPATNMTLYAQFTINSYTATFDVDGETTNQKVDY--------QALLQEPTAPTKDGYTFVGWYDAKTGGTEWD---------ATSKMPTSDITLYARFTKNPSSDNSQTAPGKDDK-----------------NDKDKLTIKANDSADATSTKLPKTSDDSSMIPTILGTLFIGGAILILRKKTTN 489
17 -40.400IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  22  518MTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTSVHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNEGNLSSLSDLTNLTELNLRNNVYIDDISGLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNKIENISALSDLENLNKLVVSKNKIIDISPVANMVNRGAIVTASNQTYLLAPSSIGNSGNYKDGKITWTNMTATSSSTEQTYTIGDTISEEQFLKDVNAKSSDGAPVTTLTSEKDGIQGDSCKVIVKVLHGAPVISADQTISYDKHATITEKQFLEDIHASTDLDTAITTNFSTAVNLNKGGDYTVALNSENEDGVKAETVYVTVTVNKDPIISAKTEITYDKFSKKTEAAFLDDIDADTNDGSIVTSNFATAVNLDKAGDYTVTLNSINSDGVAGTPTAIIVHVEKEKIATISTNTAQQYEKYAKINETQFLKDVHASINASPTTAVLESDFETVVKLDVPGT............................. 1156
18 -38.100IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  17  14IMTVVSLLIMVLGIQGNNDVKAAPQVAPP-------ASINQIFPDADLAEGIRAELQKSSVTDVVTEELESISQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISD--ISPLQNLTNVTDLYLVDNDIS--DLRPLANLTQMYSLRLGGNSNISDLNPVRNMTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNE--ITDLSPVANLQKLTSLHLANNQITNISMLEDLTNLTSLGLKNLTHVTYLQLGYNQIVDVKIIGGLTNLTSLQLTQNHITDISPLANLTKIQYSDFSNQMITN............................................................................................................................................................................................................................... 378
19 -35.100IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  16  16MVSNPLLTFAATNDVIDNTTE-ITTDKETSSTQPTIKNTLKAFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSDVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNPAPEKGVVEIHYVDEDNKQLNSTTEISGTIGDNEGYTLTTTPGNATGTTTGSQTVTYVYTKNIEAAEPITVNYVDANG-------KTLAPSETLNGNVGDTY--KATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNTNTDQPLP-----------------TKKPTNTTPTKPSNLKTTEVKKASDTLPKTGDSAPWKSALLGVFLSSTALVIWKKKK.. 851
20 -35.000IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  13  2...KKKFVYLLLLVLFMTVLP-MLEAQAASTSWIEQE----LDGNEPFIAETEKILSKNRQ-DITLADLETIQKIHV--FGADSINKISDYKNLTALEANYGTITEVPEVGSLKELVTLNVDENNLQEFP-MVIFQLPKLEVLYISRGNITEIP-TEITTLSHLKVLDVSNQKLVTIPDSILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLEFYDNYYDDGTSANILTNGVATDVGDGYITIKSTLSTNSNPFAKVRVPIKVTAPLKGADVTVQYLDSNGDTLATPDILSGNEGDAYASTPKTIDGY---TLTQTPTNAQGTFTEEPQTVIYVYTKNSVAAAPVTVKYLNEE--------KILTASDNLTGNVDDPYQTKAKEFAGYTLDESKLPTNASGVFKTNAQTVTYVYKTPASIKAHDSTMNVGDTWSAKDNFDSAVDSLGVAVPFDE--------VKVDGSVDTTKAGVYPVTYSFAGDSVTIKVTVKATVVPAPPKPVVPAPANPNTPSTQQTPTKQSGTLKIKATHQEQPIVAGNLKLPTTGDNLWDSVLYFGFITVCLSFVLFFRLKKQ 623
21 -34.100IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  21  1MRKVLMFLSTALLLAILSLTGLDLKAKAASDLYPLPAPIIDVFPDDGLAKDMAKNLNKDSVNDIDQDDLDALTGLGFETSTITNITTIPHLKTLFFADPPGRLTRNLSLYQNYPEMDTITMSGNNLIGS-IPDFTGMPALKQLYMSEMLITSDELPNFNNIPLLITLDLSSN-QLTTIPDFQNIPNLTFLDLNANLLTNTPDFQNLPKLTDLNLRHNNLTGTMVYTNLPSLESLNLDYNFLTELPS....................................................................................................................................................................................................................................................................................................................................................... 281
22 -33.400IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  16  2KKILTGLSTTLLLTVLLLTTGGDLKAKAASDLYPLPAPIIDVFPDEGLAKDMAKNLNKDSVNDIDQDDLDALTGLGFETETITNMQLLENNVNIVSVMEFGEDLTEFPDISTIPHLNTLFFNTPPEGNLSLPDYQNYPEMVTITMSGSNLIGA-IPDFTGMPDLSQLYMADM-MITSDDVFHTIPKLSTLDLSHNQLTNLPDFQNLTNLAELNLSFNNLTNTTNFTNLSNLNNLNLDYNHLNEL......................................................................................................................................................................................................................................................................................................................................................... 257
23 -32.300IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  16  7......................CLSAIVLSLNFVWINPITGSASKITKETNQQVNLKNNVTDIVTSEDLGGQTWLNEVNRQLAPKTVFEDLAKITTISLNNRSLTG-PEIKNLVSLQRLYLFSNKLSGEIPAELGELTKLTELRLDYNELSGK-----DGLGNISEIALQNNRLVGQISLYENRTGKNEVNVSGNQVTI-QSEPSVYSAYTYPSSTPEYSG-ANNSFISNLTNDMNLTPFLKNSPTFINLQVVYMFNSELFDGHDVTITDTNDGRVLYDGTLTSDPVPAHDLTVNYVDEAGAEIHEPQTVSGNVGDDYDVTTPEFELAIDKYELDTEQMPTNGLGTLSSEAQTVTYVYKKVNGAPVTVKYEDQNGVEITTSDVLTGKLDATYQSKAKEIAGFTLDNSNASGIFETNPQTVTYVYQAATIKAHDSTIYVEDKWSAEDNFDSAVNSVGAAVSFDDLEVEGTVDTTKAGVYPVTYSFAGES------VTINVTVKAKDLPAPPVTPTKPVVPIQPTNPDQPDIQAAPGEHQASTTVAQKEQPTVAGNLKLPTTGDNDSVLYSVFGLIAVCVAFSLFFWRKKQ 635
24 -31.600IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  12  35MKTENQLLKTDLKETPKEKTP-NNNLKNQLVQAGTKTYNDY-FPDDNLAKEVAETMNKNADESVTVEELAKVTKLDARSQGIEDSTGIEYLTGLEVLNLEDNQLKSID-VSKNLNLKELTCSNNPLANLD---VSKNLALEELTCENNELTQLDVSQNTALEQLTKLDVSKNSALRYLADVSKNPALTNLGCTKNQLTDLD-VSQNPNLGTLVCSDNQLTNLD-VSQNQALENLACDNNELKNID-INQALSLKELSCENNQLTNLDTTQNLALEILY---------------CDDNQLTDLDVRKNVNLLILFCNNNQLTNLAVGETIAKV................................................................................................................................................................................................................................................................. 358
25 -31.600CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  17 1021LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ--ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQTVTQPLKAIFNVKFETTKEVEAGNLLTEPAKPVKEGHTFVGWFDAQTGGTKWNFSTDKMPTNDINLYAQFSINSYTATFDNDGVTTSQTVDYQ---------LLQEPTAPTKEGYTFKGWYDAKTGGDKANSYTATFDVDGKDKMPANDITLYAQFTKNPNTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNAYDPYNSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKKARAS 1682
26 -31.200IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  16  5......................PTIKAQADTVPLPAP-IIEAFPVEAIAEAIAGELDKDSVNDTITQTAIPLPSLGLTGEDLSVL-NNEVFTNAIELAIWSNNIGELPDSEALPALENIEANGANITVF---PDANYPNLTNVDLSQNNFGFN-IPKFVGMEGLVSINMENA-GLSGYIAWMNMPNLDSLILNENHLISIEDIFLSQQLGTHSFANQTATYPTTIKQGENLKVFVPFIYQALD.......................................................................................................................................................................................................................................................................................................................................................... 230
27 -28.500IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  1.......MKFPSIFNKIKPQS-IQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRINCAFLSKQNDIDLSGLNLSTQ--PPGLQNFTSINLDNNQLTHFD-ATNYDRLVKLSLNSNTLESINIH-QGRNVSITHISMNNNCLRNID---IDRLSSITYFSAAHN-KLEFV-QLESCEWLQYLNLSHNQLTDIV-TGNKEELLLLDLSHNKLASLH-NALFPNLNTLLINNNLLSEIKMYSNFCKVQTLNAANNQLEKINLHFLTYLSSIKSLRLDNNKIT............................................................................................................................................................................................................................................................................................................. 270
28 -22.800IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  14  758AARGLNVGHLKLTFCSVGPTEVLQHLRRPVALQLDYNSVGDI---PCLGVCKALYLRDNNISDRGICKLEQLQKLALFNNKLTDAKLLACRQNFLALRLGNNYITAAEGLRGNTSLQFLGFWGNRVGDEGAQALAEAQSLRWLSLVGNNIGSVGAQALALMVMLEELCLEEN-HLQDAEGLKKNSSLKILKLSNNCITYLQALERNDTILEVWLRGNTFSLEEVDKLGCRDTRLLL................................................................................................................................................................................................................................................................................................................................................................. 1040
29 -22.000IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  12  43.......ASVDCHGLGLRAVPR----RNAERLDLDRNNITRITKMDGLKNLRVLHLEDNQVSVIERQDLKQLERLRLNKNKLQVLLLFQSTPKLTRLDLSENQIQGIPAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHNIVDCRGLMEIPGIVEIRLEQNSIKAIGAFTQYKKLKRIDISKNQISDIAPFQGLKSLTSLVLYGNKITEIAKFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK......................................................................................................................................................................................................................................................................................................... 420
30 -19.900IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  1........MFPLNDLSLKTQSVLNKITSNTESTIKQHELVSDDAINELSSELVSCLGNDKFTPVSEDLLNMLSEFKLLREQCFRWNYTLLFENYGAYDKTGSITIEKSQEGTLPIRHKLEFISTNIAEDKLTKITDALHSNELNLSSLSLGSNELDSIQVPESCKELELDFN-NLTEFPQV--PDGITLISVNNNLISYIDSF--PPKAKKIFICHNKLSEIPALPD--TAKVFDCSENNIKEIRWF--PKNLKEAYIEYNKIEVIPAIPG----NLKLLCMKCNPIK............................................................................................................................................................................................................................................................................................................. 327
31 -19.800IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  1........MFPLNDLSLKTQSVLNKITSNTESTIKQHELVSD---NELSSELVSCLGNDKFTPVSENLLNMLSEFKLLREQCFRWGNTLLFENYESYDKTGSITIEKNQEGTLPIRHKLEFISTNIAEDKLTKITDALHSNELDLSYLFLGSNELDSIQVPESCKELELDFN-NLTEFPQV--PDGITLISVNNNLISHIDSF--PPKAKKIFISHNKLSETPAIPD--TAKVFDCGYNKIQEIRYF--PKNLKEARIGYNNIEVVPAIPG----NLKILFMECNPIK............................................................................................................................................................................................................................................................................................................. 327
32 -19.800IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  22  183...............................................................................................................................................................................................................................................................................................................................................................AEETEITYSPGSDVTEEQFLTDIHASVTDNYDSTSNFTSAVNLAVSGDYSVNVQATDKAGNVSNTLNVTVHVSTPPVAGANITVNHLDSNG-------NKIAESDTLTGVVNSNY--QSESKKITGYTLETTPTNATGTFTDTPQTVDYIYKKDTVTPTPITVNPVEPVKPVNPVVNKPVTVKPANDNTN-PSTSNSVEKTTYSSLPTTGDTDQSKSSTIFGALLLLISAPLLLFKKK 415
33 -18.600IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  12  2LKKIIALIALVVIINTVSFTSVSASTPTWLEQTMNNNEPFIKEIETETGKT----------ANITQTDLEAITALRV--TGASDIANIDMLTHLTLLKAVQGTISSVNSVGNLKELKILNLNTNHLSNFP-TIVYQLPKLEELQLNDGTIEEIPATITNMASHLKFLTVNNNRLVKVPTIIFSTNWSN---------------SSTGELDLFTTGNQIVTDIPA--------------SNFNNGQNMLEFYDGQFQKQDQLTTTPGYTIDVPVGTDFNQLTPDKTKLALTSGRTLLAQHEFEYYDDGSSSLIHNGVAAAPGQATIFIKSKFSTQSNKFARTQVTVNIAALNGGPITVKHEDTK----QELAPPVILNGKDGDPYTTTQKTFPG------YTLVATPANQNGAFTLNPATVNYVYSANDYKLTSTFKDAQG---------QELKAPVVDTKDYHIQDNYTTTAATIPGYSLVSTPANQNGTFGAGNVTVNYVYKKDDYTLTSTYKDTNGQELKAPVVDATTYHYQDTYTTTAAVFPGYTLVATPTNATGTFGSSNITVHYV................... 518
34 -16.300IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  13  176....................................TSFALAFYSSGIEKVIIRDNNYPTAPSLLTKNCSNLMEVDLSGLDTSAVTTMWDMRALEELDVSHFDTSSVTNMSYMRNLEVLDVSNLDTSS--VTNMYAMTSLEELDVSH---DTSSVTDMYRVEKLKKLDVSNTSSATAMVQMRNCSALEKLDVSNFNTSLVTDMRAMTSLEALDVSNFDTSSVTNMAAMEKVEKLDLSTFDTSSVTNMGTM................................................................................................................................................................................................................................................................................................................................................... 417
35 -15.100IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  16  248...............................................................................................................................................................................................................................................................................................................................................................................................................YELSQVPSNQSGTYTDQTQSVIFKYKKDEVAKDVTVTYKDTK--------NQLADPVILKGDIGSTF--ETEAKSFKGYKLTKTPSNHSSVFTSDSQEVEYVYSKDDAVITPPVTPVNPDKPIINPVKPVNPATSTVPNKNISKKVNQTGKTSTALQLPKTGDSENNLPLIIGVSLLISGVYIFTTRRKR 437
36 -14.600IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  33IEEARASGRLYIKDCDIEYLPQL--PNEITSVTIENCNNLTTLTGVNTQNLSVINCEKLQITDMP----STVKNLHIELTDSPFIHFIS--EGIECLTVCHCYISGVP-----ESVRYLEIKGSATDS-----IKNVNGLSSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL--PESVTSVTIHAEKTTWNIGVEGMPDGLDLDLQN..................................................................................................................................................................................................................................................................................................................................................................................... 232
37 -11.700IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  14  222..........................GSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP-ENLKSLVLHFLQQYYAIYDSGDRQGLLDAACCSLS---IPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRL----LKHTRLNVVAFLNELPKTQ............................................................................................................................................................................................................................................................................................................................................... 473
38 -11.200CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  12  222..........................GSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV-QYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPFKDSRNVKKLKDPTLRFRLLTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVSNSGLCIVNDELFVRNASSEEIQRSPVPTLSPEQQEMLQAFSTQSGMNDYTRSAQAFTHLKAKGEIPEVAFMKXMANEGEEIELTEFPETEKERKDEEKLSSCSEETTNTSSSSGSDHVPVPIEVNVIIQNSSRTEDELQNSKEIELTGFQGKLSSCSEETTAPSSSYSSKQASVFIEENGDNETSTYRPQNVLTNLNSLYTTFEDARAQGKLEKYPPDFRPKRDLSATWDPGMPTPPLPPRPANLGERQASTVRLHVKESNCKQPRERKNERNIVKDLK---LVVVILAVLLLVTVLSILHIGMKS 876
39 -11.000IDP05200 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2714 [Listeria monocytogenes EGD-e]  ali follow..  15  120....................................................................................................................................................................................................................................................................................................................................................................................................NSKLSTAQTGIQEVTLLGDNEDGKTT-AVKLNYLVKEKTAQLTITDMNFDLETKIPADENFGEGTTTADKDGYFYAEWATTPK-------QITAYAFDESGNYSEEVTYQV------------PAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKTEWIFVVAGVIVILVAVLLLRKRKK. 315
40 -10.000IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  11  59.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KRIAQEQLKNDMAKKEEAIKAQQKSEEGKKEAAQVQPKNAATKKEVAKPAVQGEKLPNTA-SNNVAMMALSACLVGIGTLFGLKRRNK 145
41 -9.040IDP06545 gene: fms18; LPXTG family cell surface protein Fms18 [Enterococcus faecium DO] AFK59452 [Enterococcus faecium DO]  ali follow..  9  549......................................................................AVKHLAINEYYWQETKALDETKYPVSIKKVDDNEKNAVITRDVTAKEQVIRFGFDFFKFA----GSAAGTAETGFNDLTFKVSPLEGTSEITGAEDEAITAYNEQLGFDGYGKFENLP---YGDYLLEEVEAPEGFTPLEIRSTFKENKADYTKSEYIFTITEKGQKQPIKTVTVPYEKLTNKAFSVSLNRLMLYDLPEEEDSLTSLGTWKDGGKELTDLDSTELVDKLSYNLHEIKEDWYVVAAQEKDEKAKPVVIAETTATLANKEKTGTWKILHKLTAEQVLDKTIVLFNYVYENKKPYEAGDDPVAKDASLNNQAQTVNCTVERHVSIQTKAHLEDGSQTFTHGDVVDMFDDVSITHDVL---DGSKEAFETILYALLPDNTTKEIWKSGKIDYEVNDKEFTKTVLAEKVDTSKYPEGTSFTFKEINYGKDGNINGKHNEDLKEKTQTLTPKKVPTTPSAPEQPEIPTVPSDSQESSPTVKTFPQTGEKNSNVLLFIGFTLIFATAGYYFWNRRN 1075
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.