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Query: IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGRRTTRVSRLGKEKKRSVLIVLAALVLIMGGFTYFFNSKFLYNGKIAKNVYIEGVNVSDMTKAEALKAITDKYTPEDLNLAYDGKKYTISPKDIDLKYDTEDVVKDAYESTKKGSYFQNLKKYIDIRVNKANMKIKAEYDEAKLSSKVSSIADSINVKMKNASISVGSGGLSYTDSVVGREFDLAANKESIYNMIKNKEHKTLELKVNLQKPDITTEQVKTVNSVIGQYSTTYSQAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSASTYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISIEVKQTGQNKYSTYRIFKDSNGKVIKKEHISNSSYKELKKLast
1 -109.000IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630]  ali  100  1MGRRTTRVSRLGKEKKRSVLIVLAALVLIMGGFTYFFNSKFLYNGKIAKNVYIEGVNVSDMTKAEALKAITDKYTPEDLNLAYDGKKYTISPKDIDLKYDTEDVVKDAYESTKKGSYFQNLKKYIDIRVNKANMKIKAEYDEAKLSSKVSSIADSINVKMKNASISVGSGGLSYTDSVVGREFDLAANKESIYNMIKNKEHKTLELKVNLQKPDITTEQVKTVNSVIGQYSTTYSQAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSASTYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISIEVKQTGQNKYSTYRIFKDSNGKVIKKEHISNSSYKELKK 419
2 -72.700IDP92246 RecName: Full=Vancomycin B-type resistance protein vanW EF_2296 [Enterococcus faecalis]  ali follow..  18  4............................................................................................................................................................................KRLTQRFPFLLPMRQAQRKICFYAG--MRFDGCCYAQTIGEKTLPYLLFETDCALYNHNTGFDIYQENKVFNLKLAAKTLNGLLIKPGETFSFWRLVRHADKDTPYKDGLTVANGKLTTMSGGGMCQMSNLLFWVFLHTPLTIIQRSGHVVKESDEIKGVDATISEGWIDLKVRNDTDCTYQIWVTLDDEKIIGQVFADKQPQALYKIANGGGIYEYAKVERQVALGTGEIIDCKLLYTNKCKICYP 263
3 -66.800IDP92247 gene: vanWG; VanWG [Enterococcus faecalis] ABA71730 [Enterococcus faecalis]  ali follow..  20  2...........................................................................................................................................................IEVYKLTQRKRL--------TQLFPFLLPLRKWQRKKYFYFKMKFDGNAKKTSEKLLPNTVFETSSLM---LNENSGFDMKYQINKVHNLKLAAKTINKVIIEPKETFSFWQLVRWADRHEKYKDGLNLVNGKIVGSYGGGLCQLSNMLFWLFLHTPLVIVERHGHAVESEDLPCGTDATINEGWLDLKLRNDTDNTFQIEISFDDNFMYGRILSQSSVNIEYTVDKMTGSQTEKELYVEIAYKLPDDVKIE............ 277
4 -5.230IDP05354 hypothetical protein CD3043 [Clostridium difficile 630] CD3043 [Peptoclostridium difficile 630]  ali follow..  15  40...................................................................................................................................................................................................................GPKLSQAQLNSVAQATADFMNKKITKNMTTDAKIL----VAYNHIK---NNTTYVD----WNAVEGANTAYTLVTKK-------GACSGMARSMKALCAMGIESYTSNDHQWNLIRFGDGRDID.................................................................................... 154
5 -5.030IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  11  966.................................................GYSTSGVTIPGYTLVATPSNKKGTFGASNVTVNYNGYALITTYKD-GKDLKPLAIDTKTYNINDPYT------------------ATALNIPGYTLTTTPANEKGVFGASDETVNYVYKANDYTLT-DANGKELQAPKVDAK-----TYHIQDTYKTTAAVIPGYTLVAIPKNDQGTFGANNVTVNYVYQTNDYTLTATFKDAQGNELKATEVDAQKYHIHDT-----YTSKAAVIPG-----------------YTLEKTPTNETGTFNASDIQVNYVYKANDYQLTSTFKD-----------------QGNEIALPTVDAKTYHIHEAYTTKARLIPGYSLVAAPKNQIGAFGTSDVTVNYVYKKDAI 1282
6 -4.950IDP91270 acetyltransf2, N-acetyltransferase [Bacillus anthracis str. Sterne] NT05BA3459 [Bacillus anthracis str. Sterne]  ali follow..  11  1..............................................................................................................................................................................................................................MTDFQKQFFARLNIEEKQKVSFEDLSNIMYAMAQTVPFENLNVL-------EKNFKEISQENLKEKILVNNRGGLCYELNPTMYYFLKD------------------AGFDVYLVSGTVYNAANSIWAVDIATILKHHNELYLIEVFGSY............................................... 129
7 -4.930IDP02345 5-formyltetrahydroformate cycloligase family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1220 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  1...........................................................................................................................................MDKNQIRRELLNIRDSLINKTYLSEQISSKLISYIQANFTNPKI-FASLKNEIDTQTINNHFENIYLPIVHPFIKHGLWFARDSKKYY---LNKYKIKEPVYCVKDVVTAWELD-IIIVPMVGFT----------SDKFR------------GMGGG-------FYDYNLTIGIAFDEQQNNAIIIDKHDIKLDLIITPTRI.............................................................................. 181
8 -4.840IDP04152 HlyD family secretion protein [Yersinia pestis CO92] YPO3919 [Yersinia pestis CO92]  ali follow..  31......................GGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVA-PLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQSTSLQARVEQSTSDIAE---AHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAP-------------VSGSVIA---GGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSV---WRIGADRIQPPPTSPPYYPLTVAIDLDPTERPGMAVDVFIRTGERSLLS.............. 425
9 -4.830IDP91308 membrane-fusion protein [Vibrio vulnificus CMCP6] VV2_0483 [Vibrio vulnificus CMCP6]  ali follow..  41..............RLTAITLSIGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQYEQSRVMSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLITQSEFQTNELIRYRTLLNDQPLVQDPMFTALPTEQQALINEYLSEKREFDATLASISAEMKV--NRTSQAARQSDINALIQLTENISQRLAARKTLNQVKVIGHVEYLEQEKELLEVQ-LKSQYQSLEERQTGFKAQKHREWLEKRRQAKLQLAALNQELSKVREREQLEIIRSP-------------VDGTVQQ---GAVLQPAQNLMIIVPENSVQLAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELSISRDSTTDEQLGLVFPAQVQLNKNNIVIDGQTTPGMSVVAEIKTDKRRVID.............. 436
10 -4.830IDP95076 hypothetical protein CD630_11560 [Peptoclostridium difficile 630] YP_001087648 [Peptoclostridium difficile 630]  ali follow..  16  51...................................................................................................................................................................................................................GPKLSQAQLNSVAQATADFMNKKITKNMTTDAKIR----VAYNHIK---NNTTYVN----WNAAEGANTAYTLVTKK-------GACSGMCRSLKALCAMGIECYTTNDHQWNLIRFEDGRDID.................................................................................... 165

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.