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Query: IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKFNWKVVLLFVLILAFIVPVYSKAVETGKEVPKSPELLDDKSSTLKNVNTPKNLKASPLTIPANSTIADLFPDEGMAKTIANQLGRTENNNFQTPTKTDWKVDDVVTEVELNRMWYLTSVATIGSIEGIQYLPNLYDVRLQFDKQCKDLSPFLKAPNGYSQLYRLNINNGNISDISPLTELSAPTLNDIDLGGNNISDLSLFPKLPNKFPNLEEISLERNNISDVSPLAKFASTKIKIFNLDENHITDLSSLTNNKMPNLQRLYVRYQTLDMEPVVTSSKYEFSIQPSIFGTTKPVKITATKPKATIDPITSKITYSAEEMAKKPFYYTPLFPGVTYSWDENFPLNGSNSLVDFRGTITQPLTYIEPPQVVSYNSGLTYEIGTSLTEQQFLNDVNLITDQPTTITSDFDVKLKNLNTVGIYWVAVKASNIEGNAEANIMVTIKYKPPVITADAEYTYLVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNTAGDYVVTLTSPKSGYYEQDAIPVTVIVHVKELLELQIPDEFRMDIDANADSVPISDKKQTLKCYGSSGKAELEVIDRRTVRQGWTITGAMTPFTNSGGDVLQTSLKYQSKAPSSSPIYLNTTNQPIEKKQSAVTDPKYDSTVFNLEDSLSMEIEPNDALVNDSYESKITWTLEDAPRPLast
1 -108.000IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali  100  1MKFNWKVVLLFVLILAFIVPVYSKAVETGKEVPKSPELLDDKSSTLKNVNTPKNLKASPLTIPANSTIADLFPDEGMAKTIANQLGRTENNNFQTPTKTDWKVDDVVTEVELNRMWYLTSVATIGSIEGIQYLPNLYDVRLQFDKQCKDLSPFLKAPNGYSQLYRLNINNGNISDISPLTELSAPTLNDIDLGGNNISDLSLFPKLPNKFPNLEEISLERNNISDVSPLAKFASTKIKIFNLDENHITDLSSLTNNKMPNLQRLYVRYQTLDMEPVVTSSKYEFSIQPSIFGTTKPVKITATKPKATIDPITSKITYSAEEMAKKPFYYTPLFPGVTYSWDENFPLNGSNSLVDFRGTITQPLTYIEPPQVVSYNSGLTYEIGTSLTEQQFLNDVNLITDQPTTITSDFDVKLKNLNTVGIYWVAVKASNIEGNAEANIMVTIKYKPPVITADAEYTYLVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNTAGDYVVTLTSPKSGYYEQDAIPVTVIVHVKELLELQIPDEFRMDIDANADSVPISDKKQTLKCYGSSGKAELEVIDRRTVRQGWTITGAMTPFTNSGGDVLQTSLKYQSKAPSSSPIYLNTTNQPIEKKQSAVTDPKYDSTVFNLEDSLSMEIEPNDALVNDSYESKITWTLEDAPRP 673
2 -47.600IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  15  1MKKALK------------LFLATICMFIMIYPSTAAHAEETNIVNI--------------------------PDANLKTYLNGLLKQASDAPI--------------TKTQMNTIQTVTLGSTYTDLTGLEEAGNLVTLSLN-NTNIQTLEPI----KNQTSLTYLTVGGDNVKLFVDLNGLV--NLQSLSINGSEVTHFKTFNKL----PKLTYLYAQNSKITDISALASL--PALTTLFLQFDGIDDFRPLN--DFESFKNGNLKALAAFG-----------------------QNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFD-QVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNK................................................................. 582
3 -46.300IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  22  1MKKLCTVILFLTLLLNGFVPNAHAKTESPSADNNLQVAPPAAIKDLFPDPAMANLKSLNLKKLNKKSTSDTVTQTELNSLIKSIEGVEYLQNITELDVEKNQITDIAPVANLKKLTTLLINNQITDISPVADLANLTTFYCG-NNPISDISAV----QNLTKLSIFNCYTANVEDISPVKNLV--NLKTLSLGSNNIHDISDIEKL----TALEYLSFSNNPVENPEVIGNL--TNLNTLWLYNAQIRNIDFTA--NLPKLKSVYLYNNQISNISEVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQIITNFGNIVTPNNISDNGTYNSPTLSWNLNETKDNLSYDATYSGTVIQPLTKDSTRPIITADGKVSYPEGTTKTTTEFLTDIHATTDDGSPIEVDL--NALDFGTAGSYTVTLTAVDTAGNEATPVDVTIIITKPVITADEKVSYPEGTTKTAAEFLTDIHATTDDGSPIEVDL-NAVDFGTAGSYTVTLNAVDTAGNEATPIQVTIIITNSKKIDPIIP............................................................................................................................................ 562
4 -45.800IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  18  1....MKKMGVKIGLCILLIMPFTISFSANVSAEENISIKAAQ-------------------------DVVNIPDPALKSYLNGLLGQPSTSDI--------------TEAQMDTITDVTINASLTDLTGLDYAHNLTILHLT-NTGVTDYSLV----ANIPSLTNLNISGSNLTTIPDLNGLT--NVTNLNLSSGKLDALTKFNKL----PNLTFLNLDNNSITDFMPLKSL--PNLASLFIQFCGVNDFRGIDS--FPKLTNLAAFGQNVGSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYL----FPFTTNTASSSTYFTLNGVQISGSRLSIDDTGVTVSGITKDFFDSITKMEHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDDGTPVTSDFN-TIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTIAKPVITADKSISYTKDTTKTEQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGLNADPVIILVNVVAGNEPPTPPGPGPDPTPDPTPNPNNPNINPNPDNGQSAKSEIASNPSNSEVNIA................................................................................................ 556
5 -45.600IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  19  1MSSNIVKIGVCFAVLAVPVSQTTLPVFAAEQPGLKASQDNVN-----------------------------IPDSTFKAYLNGLLGQASTANI--------------TEAQMDSLTYITLNINVTDLTGIEYAHNIKDLTIN-NIHATNYNQI----SGLSNLERLRIMGADVTSIPNLSGLT--NLTLLDLSHSAHDDLTKINTL----PKVTSIDLSYNAITDIMPLKTM--PELKSLNIQFDGVHDYRGIED--FPKLNTLLAYSQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERSTASSDTYFTMNEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQHSLNITADSEKTYIENQLVTEATFLSDIHAKTDDGSTVTSDFA-DKVDFNTPGTYTVTLQSENNAGLKATPVQVNVTIAKTTITADEKITYKVDTSKTEAAFLADIKATTNDGTAITSDFATVVDLSKPGKYVVTLNAENDLQ-KALPVQVMVIVEKETPIPDPTPTPTPDPTPTPDPSPTPNPVINPNVNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSL................................................................................ 576
6 -43.300IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  14  1MRKIPVVVSLALCFSLVSPSLYDTTEPTTIDQPSRMDNSQTAPQKMTASSENTPKNNLKSTSENSKTYAELFPDVNLAKIIAKNISEAELQTITNLVATNQNITSLTGIEHLTALENINVNNELTTIDSLFNIPTLKSISANNNKITGNFSLV----KTLPELHTLEVLGNAITELD----ENQPNLVTLSADELELKKLSQLNGLLMNLPEIISVDISGNYLSDDIHLENL--PAVKNLDISSNELTRLPKIN--DFPLLTTINVRSNKIDRLESSKLVDVPKLATLNADKQAVTLSKTIAAGNFTIPNNVENLAGQMVTPKIISNNGTYSDQSIAWASGELSGLSKVSYTFDEVINTVNQPIEVKAVPVIVADKSVSYAPVNAKDEATFLQDIRASASENAQITSDYS-EVVDFATPGDYTVTLHAKNEFDLKADPVTVVVHINDQVAVNSNDISFEVGTELTSEVLLAKSGAVVTDLYDEAIKMESEVDSSKLGTYEATIIAKSKSGASSDPIKLSVKIVDTEKPIIQINNEIIIEKGSELTEGQIIDQVGITATDNYDQDLNIHMKVDTSKPGSYEVTIYTEDSSGNRSETVTITVKVPEARIGKITIQYMDSENNAESNTITGEVGETYETLAKEIEGYTLKENPANSSGVFEETRQTIQYIKDIINP 750
7 -43.000IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  17  3.............................SIKSNIMKIGVCSVMVLVPLSSLPSFAAEEIA-LKESQDVVNIPDPQLKKELNLYLNQAENADI--------------TEAQMATFRNITLNSGIKDLTGIEYLKNITTLSI--NNINASYEPI----QTLSSLEKLVINGENVNAIPDLSVLS--NLTFLDLSRTNIDDFSKISNI----PNLNKLDISNNKITKISELNNL--PSLQELRVSDCQITNFKGIE--KFPNLTAFYGDGQLFGIDSFDGFKNIKSSELTFDANAKTLFVPFSIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVTNDKISINQQGITNGTYSLKQIGSYRAFSVDHSVNITAQDNISYIQNDTVTPEKFLTDIKADANGGTITSD---TDKVDFTKPGNYTVTLNAQNTKGLKGEPIQVTVTIIETVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITSDFESAVDFTKAGEYIVTLNAENDTQ-KAAPLTVKIRVNPKLPDPVVPIPYPDPTPDPTPDPTVPVPTPEDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDSLP.................................................................................. 573
8 -42.500IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  17  429...TLDNLPKLEKLDLKENQITSISEITDLPRLSYLDVSVNNLTTIGDLKKLPLLEWLNV---SSNRLSDVSTLTNFPSLNYINISNNVIRSLKEFYAQNNSISDISMIHDMPNLRKVDASNLITNIGTFDNLPKLQSLDVHSNR-ITSTSVI----HDLPSLETFNAQTNLITNIGTMDNLP--DLTYVNLSFNRIPSLAPIGDLPNGVPKLRILDLQNNYLNDLTNLTELNLSRLIYLNLDSNKIEDISALSN--LTNLQELTLENNKIENISALSDLENLNKLVVSKNKIIDISPVANMVNRGAIVTASNQTYTLPTVLSYDTISEEQFLKDVNAKSSDGAPVTSSEKDGIQGDSCKVIVKVLHGAPVISADQTISYDKHATITEKQFLEDIHASTDLDTAITTNF-STAVNLNKGGDYTVALNSENEDGVKAETVYVTVTVPAPIISAKTEITYDKFSKKTEAAFLDDIDADTNDGSIVTSNFATAVNLDKAGDYTVTLNSINSDGVAGTPTAIIVHVEKEKIATISTNTAQQYEKYAKINETQFLKDVHASINASAVLESDFETVVKLDVPGTYTVTITATNEDGGPEITADKEITYPKFDEVSEAEFLNDIHATISDKNVAITSNFSTDVNLNKAGDYTVTLNATNEDGVKATPVEVIVHVQQGERP 1267
9 -42.400IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  17  49...TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILMNNNQIANLTGLTLFNNQITDIDPLKNLTNLNRLELSNTISDISALSGLTSLQQLSF--GNQVTDLKPL----ANLTTLERLDISSNKVSDISVLAKLT--NLESLIATNNQISDITPLGIL----TNLDELSLNGNQLKDIGTLASL--TNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNEN------QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNIN------------------WLSAGHNQISDLTPLANLTRITQLGLNDQAWTN.......................................................................................................................................................................................................................................................................... 419
10 -42.000IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  19  1..........MKEKHNPRRKYCLISGLAIIFSLWIIIGNGAKVQAETITV--------------PTPIKQIFSDDAFAETIKDNLKKKSVTDIDQIIANNSDIKSVQGIQYLPNVTKLFLGNKLTDIKPLANLKNLGWLFLD-ENKVKDLSSL----KDLKKLKSLSLEHNGISDINGLVHLP--QLESLYLGNNKITDITVLSRL----TKLDTLSLEDNQISDIVPLAGL--TKLQNLYLSKNHISDLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVP----NTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY............................................................................................................................................................................................................................................................................................................................. 323
11 -41.900IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  17  1MYKLVKIILALFLI-------------------TTVFLPFSNVKAAPT-------------------DVVNIPDPVLNSGLKNIIGNPFLDEITEANMATITVADLSNMSGAPGYPVT---GLIKDLTGLDKAVNMTKLYFSNQSQIKNLDKI----KNLPNLKKIVAVTTGLNNISALGEMP--ALEEVELGGDYITDFTPLLEK----ENLTSFSYNSYAWSEFKNFTKL--KSLVKLDLTWNNITDLSPLT--ENDHITNLNLNYNQFT----------------------------NVAPIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNNNITDLSNLKNFFEAM............................................................................................................................................................................................................................................................................................................................. 283
12 -41.300IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  19  1MK---KRWNSVFKLVLMVTAILGLSLSQGVEVRAESITQPTAINVIFPDPALANAIKIAA---GKSNVTDTVTQADLDGITTLSAFGTGVTTLIGLELKDNQITDLTPLKNLTKITELELSNPLKNVSAIAGLQSIKTLDLT-STQITDVTPL----AGLSNLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSDLTPLANL----SKLTTLKADDNKISDISPLASL--PNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGPSGAPIAPAT..................................................................................................................................................................................................................................................................................................................................................................................... 293
13 -40.100IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  20  48..FTDPKLAQVVADWLKLPAATSSVTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFG---YGNQVSDLGPLSNLTKLEVIQMPRNQISDLMSLDFEFNNLQTIEPIKNLTNMLELNVSNPISDINAVKNMTQLEFLTLR-DCEVSDLSPV----ENLSNMLMFWAGRNNISDITPLKNMS--KLLGLSLFGNQIKDVSVIKNL----TSLEDFDIKANQVSDISSLATS--TTLETLTLSFNQIIDISPLK--NLTNLTRLELENQTRALDAVEIDNPLILP-------APVIDENGSRVQPSKVSHAGVYANGEITWEGLQSNYILNYEYALPVTIGSLTTTYSGKITQPLL............................................................................................................................................................................................................................................................................................................................. 386
14 -40.100IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  17  24..VGMSSKEVQAAVIEHPTPINEIFTDPVLTDNVKTLLGKADVTDEVTQTDLDSVTHLSA---KSAGITTIEGLQYL-------------TNLSELELIDNQVTDLNPLTNLTKITELRLSNPLKDVSALAGLKNLKTMDLI-YTDITDVTPL----AGLSNLQVLNLDINQITDITPLAGLS--NLQFLSFGSTQVSDLTPLANL----SKLTTLNAMNSKVSDVSPLTGL--SNLTEVYLEENQISDVSPLA--KLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIATISDNGTYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVDGEQTSAMVGVNEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDIT........................................................................................................................................................................................................................................................................... 403
15 -39.800IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  13  286..TPLSQLKKVRTINLSGNKISDIKPLYNVSSLRKLYVSNNKITDFTGIEQLNKLGTLGV---GSNGLVNIEPISQMSGIVELNLEKNDIKGLQSLNLEENYVSDVSSLSNLINLYELKLANEIRDIRPIQELGKRIKIDAQRQKVIQDMKLRQYMLLTVKALKITDGKKEGITDFSGLEFMT--NVEELTLQNVNMKNAEFISSL----RNLKSVDLSYNQIEDIKPLHSL--EDLEKLNVSDNGIKNVPELF--KMQKLKTLDLSNNKLDNAALDGIHQLENLDALLVNN----NEINNLDEISKVSKLNKLEMMSNKVRDISPLASLKNLQWLNLSDNKIQDISTLSSMLDLL------------------SLKLAGNEIRDVRPVIQLAQWITVDIKNQKIVL.......................................................................................................................................................................................................................................................................... 764
16 -38.300IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  19  12..SALKYMPNLKSLTVANAKIKDPSFFANLKQLNHLALRGNEFSDVTPLVKMDHLDSLDL---SNNKITNVAPLIEMKNVKSLYLSGNQIEDLDYLNLANNKITNVAPLSALKNVTYLTLGNQIEDIKPLYSL-PLTDLVLTRNK-VKDLSGI----EQMKQLEELWIGKNEIKDVTPLSKMT--QLKQLHLPNNELKDITPLSSL----VNLQKLDLEANYISDLTPASNL--KKLVFLSFVANEIRDVRPVI--ELSKTAYINVQNQKVFLEETEVNKEVKVPIYEKDGKISTKIRLKGEGGTYSNDAVKW........................................................................................................................................................................................................................................................................................................................................................................ 313
17 -35.700IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  18  49..FPDADLAEGIRAELQKSSVTDVVTKEELESISQLSVYAKKIASIEGLEYLTNLKFLNL---NGNQITDLSPLSNL-------------TKLTEIYIGDNKISDISPLQNLTNVTDLYLDNDISDLRPLANLTQMYSLRLGGNSNISDLNPV----RNMTRLNNLEVTGSILKDLTPLADVT--SLTRLTLSDNQIEDLSPLAGL----TKLDNIAAYSNKITDITPVTNL--TRLQYLDLGSNEITDLSPVA--NLQKLTSLHLANNQITNISMLEDLTNLTSLGLQNN------KISDISVLKNLTHVTYLQLGYNQIVDVKIIGGLTNLTSLQLTQNHITDISPLANLTKIQ............................................................................................................................................................................................................................................................................................................................. 367
18 -31.500IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  25  1...............MKQRKTSVLHVLLVVTAILGISLWVNASHGMKAQAES---------IAQPAPINEIFTDPALAD-------------EVKTELGKTSVTDEVTQTDLNQITKLEADKGINSIEGIQYLTNLNMLGVS-SNQITNITPL----ANLTNLDSLYLGDNKISDVTPLSGLT--QLTFVQLSINQIKDVTPLANL----TKLNYLDLRENQISDASPLVNM--TDLTVLHLEKQQITAAPVVY--QTNLVAPDILKNAYGEVVPPTTISN........................................................................................................................................................................................................................................................................................................................................................................................................ 230
19 -27.600IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  13  1..........MKTTKIVIASLVSLT-MVSNPLLTFAATNDVIDNTTE-ITTDKETSSTQPTIKNTLKAGDWFPDDNFASEVAATISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLITSNNITTLD-LSQNTNLTYLACDSNK-LTNLD-----VTPLTKLTYLNCDTNKLTKLD-----QNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNK--KITKLDVTPQTQLTTLDCSFNKITELD----SQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE---------DVTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEID...................................................................................................................................................................................................................................................................................................................................... 321
20 -26.200IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  15  27......KAKAASDLYPLPAPIIDVFPDDGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETSTNDSMQLLERAM------------NNVTDVSIMEFGAKEFPDITTIPHLKTLFFADPPGRLTRLPNYQNYPEMDTITMSGNNLIGSIPDF----TGMPALKQLYMSEMLITSDELPNFNNIPLLITLDLSSNQLTTIPDFQNI----PNLTFLDLNANLLTNTPDFQNL--PKLTDLNLRHNNLTGTMV-NYTNLPSLESLNLDYNFLTELP.............................................................................................................................................................................................................................................................................................................................................................................................................. 280
21 -24.800IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  15  1MKKILTGLSTT--LLLTVLLLTITGGDLKAKAASDLYPLPAPIIDVFPDEGLAKDMAKNL---NKDSVNDVIDQDDLDALTGLGFETETITNIVSVMEFGEDLTEFPDISTIPHLNTLFFNTP-LSLPDYQNYPEMVTITMSGSNLIGAIPDF----TGMPDLSQLYMADMMITSDDVPDFHTIPKLSTLDLSHNQLTNLPDFQNL----TNLAELNLSFNNLTNT-MTNFTNLSNLNNLNLDYNHLNELPS..................................................................................................................................................................................................................................................................................................................................................................................................................................... 259
22 -24.100CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  16 1019..TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF----GNQVTDLKPLANLTTLERLDISSNKLTNLESLIATNNQISDITPLGILTNLDELSLNNQLKDIGTLASLTNLTDLDLA-NNQISNLAPL----SGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPISNL----KNLTYLTLYFNNISDISPVSSL--TKLQRLFFYNNKVSDVSSLAN--LTNINWLSAGHNQIDLTPLANLTRITQLLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE-SYTNEVSYTFSQPVTIG--KGTTTFSGTVTQPLKAIFNVKFHVDGKETT----KEVEAGNLLTEPAKPVKEGHTFVGNFSTDKMPTNDINLYSYTATFDNDGVTTSQTVDYQGLLQEPTAPTKEGYTFKGWYDAKTGGDKWDFATSKMPAKNIT----------SANSYTATFDVDGKSTTQAVDYQGLLK-------EPKAPTKAGYTFKGWYDEKTDGKKWDFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSDTSNTST-SASTTSTMNAYDPYNSKEASLPTTGDSDNALLLAVGTAMALTKKARASK........... 1683
23 -23.700IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  17  4...............................................APTIKAQADTVPL----PAPIIEAFPVEAIAEAIAGELDKDSVNDTITQA---------LDTMTAIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNN----IGELPDLSEALPALENIEANGANITVFPD----NYPNLTNVDLSQNNFGFNIP----FVGMEGLVSINMENAGLSGYIAEDIWNMPNLDSLILNENHLISI-PEDIFLSQQLGTHSFANQTATYPP.............................................................................................................................................................................................................................................................................................................................................................................................................. 209
24 -23.600IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  15  95.SVTVEELAKVTKLDARSQGIEDSTGIEYLTGLEVLNLEDNQLKSI-DVSKNLNLKELTCSNNPLANL-DVSKNLALEEL--TQLDVSQNTALEYLYCPRNQLTKL-DVSKNSALRYLADVNQLTNLD-VSKNPALTNLGCTKNQ-LTDLD-----VSQNPNLGTLVCSDNQLTNLD-----QNQALENLACDNNELKNID-----INQALSLKELSCENNQLTNLD-----QNLALEILYCDDNQLTDLDVRKN---VNLLILFCNNNQLTNLAVGE........................................................................................................................................................................................................................................................................................................................................................................................................... 353
25 -22.700IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  11  33WKEERILTGEIHRPECRNEAAKRI-NCAFLSKQNDIDLSGLNLSTQPP-----GLQNFTSINLDNNQLTHF-DATNYDRLVKLSLNSNTLESITHISMNNNCLRNI-DIDRLSSITYFSAANKLEFVQ-LESCEWLQYLNLSHN-QLTDIV-----TGNKEELLLLDLSHNKLASLH-----LFPNLNTLLINNNLLSE---IKMFYSNFCKVQTLNAANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTENTSDIRSLFPIIKKSESLNFLNISGENNC....................................................................................................................................................................................................................................................................................................................................................................................................... 304
26 -21.000IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  12  2.........................................................................................KKKFVYLLLLVLFMTVLFQMLEAQAASTSWIEQELDGNEPFADLETIQKIHVF------GADSIPNKISDYKNLTALEANYGTITEVPEVGSLK--ELVTLNVDENNLQE---FPMVIFQLPKLEVLYISRGNITEIPTEITTLASHLKVLDVSNQKLVTI-PDSILTTNWKAMHDGKLG.................................................................................................................................................................................................................................................................................................................................................................................................................... 188
27 -20.300IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  15  45VDCHGLGLRAVERLDLDRNNITRIMDFAGLKNLRVLHLEDNQVSVIER-GAFQDLKQLERLRLNKNKLQVLPELQSTPKLTRLDLSENQIQDVKNLQLDNNHISCIEAFRALRDLEILTLNNNISRILSFNHMPKIRTLRLHSNNSIKAIPA--GAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIA--KGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFV................................................................................................................................................................................................................................................................................................................................................................................................................. 440
28 -20.100IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  16  1.............................................MKKAFLCLSAIVLSLNFVWINPITGSASKI-----------ETTKETNQQVNLKNNVTDIVTS-EDLGGQTWLEVNRQLAPKTVFEDLAKITTISLNNRS-----GEVPPEIKNLVSLQRLYLFSNKLSGEIPAELGELTKLTELRLDYNELSG-----KIPDGLGNISEIALQNNRLVGQIPLS--NRTGKNEVNVSGNQVTINSQQSEPSVYSAYTFVYPSS.................................................................................................................................................................................................................................................................................................................................................................................................................... 212
29 -19.700IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  12QSVQLNKITSNTESTIKQHELVSDAIINELSSELVSCLGNDKFTPVEDCNLLNMLSEFKLLREQCFRWGNYT-EGTLPIRHKLEFISTNIAHSNELDLSYLFLGSVPPL--PDWIEMLSLVYN--ELDSIQVPESCKELELDFNN-------LTEFPQVPDGITLISVNNNLISHIDSF----PPKAKKIFISHNKLSETPAIPD------TAKVFDCGYNKIQEIRYF-----KNLKEARIGYNNIEVVPAI----PGNLKILFMECNPIKEAF.............................................................................................................................................................................................................................................................................................................................................................................................................. 330
30 -19.200IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  12QSVQLNKITSNTESTIKQHELVSDDAINELSSELVSCLGNDKFTPVEDSNLLNMLSEFKLLREQCFRWGNYT-EGTLPIRHKLEFISTNIAHSNELNLSSLSLGSVPPL--PEWIEMLSLVYN--ELDSIQVPESCKELELDFNN-------LTEFPQVPDGITLISVNNNLISYIDSF----PPKAKKIFICHNKLSEIPALPD------TAKVFDCSENNIKEIRWF-----KNLKEAYIEYNKIEVIPAI----PGNLKLLCMKCNPIKEAF.............................................................................................................................................................................................................................................................................................................................................................................................................. 330
31 -18.100IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  17  754LARKAARGLNVGHLKLTFCSVGPTE-LQHLRRPVALQLDYNSVGDIGVEQLLPCLGVCKALYLRDNNISD----CKLIECAL------HCEQLQKLALFNNKLTD----------------GCAHSMKLLACRQNFLALRLGNNY--AGAQVLAEGLRGNTSLQFLGFWGNRVGDAQALAEADHQSLRWLSLVGNNIGSAQALALMLAKNVMLEELCLEENHLQDVCSLAEGKNSSLKILKLSNNCITYLQALERN--DTILEVWLRGNTFSLEEVDKLGC........................................................................................................................................................................................................................................................................................................................................................................................................ 1033
32 -16.300IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  13  160.....TVLESVRIERSNLSRVTSFALASGIEKVIIRDNNYPTAPSLLTTEGMSNLMEVDLSGLDTSAVTTMW---------------NSCRALEELDVSHFDTSSVTNMSYMRNLEVLDVSNSVTNMYAMEDCTSLEELDVS-HFDTSSVTDMYRVFNGCEKLKKLDVSNFDTSSATAMVQMNCSALEKLDVSNFNTSLVTDMRAMFAGCTSLEALDVSNFDTSSVTNMAAMDNEKVEKLDLSTSSVTNMGTM--KNCTALKSLYLDN..................................................................................................................................................................................................................................................................................................................................................................................................................... 431
33 -15.600IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  19  2......................................................LKKIFIALIALVVIINTVSFTSVSASTPTWLEQTMNNNEPFIKEIETETGKTR-----------------ANITQTD-LEAITALR------VTGASDIPANIDMLTHLTLLKAVQGTISSVNSVGNLK--ELKILNLNTNHLSN---FPTIVYQLPKLEELQLNDGTIEEIPATITNMASHLKFLTVNNNRLVKVP...................................................................................................................................................................................................................................................................................................................................................................................................................................... 170
34 -13.500IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  20  163......................................................................................................VEDASTASALKAVNYKILDRENRRIEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL............................................................................................................................................................................................................................................................................................................................................................................................................. 356
35 -12.800IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  9  1......................................................................MLP-TSQLR-----PTGTFCSYSAETSADIKSEITPIQIEEARASGRLYIKDDIEYLPQL--PNEITSVTIENCNNLTTLTGLPVNTQNLSTVKNLHIELTDSPFIHFISE----GIECLTVCHCYISGVP---------ESVRYLEIKGSATDSIKNV-----NGLSSLSINSYNPENQARIDNLISPSLKTLSLTG..................................................................................................................................................................................................................................................................................................................................................................................................................... 188
36 -12.600CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  20  163......................................................................................................VEDASTASALKAVNYKILDRENRRIS-VEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL............................................................................................................................................................................................................................................................................................................................................................................................................. 356
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.