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Query: IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKTIKITTSLLLSFACVFSIGDFTKPHTVEAEIVYSLTNPKPVNEIFTDPKLAQVVADWLKLPAATSSVTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFGYGNQVSDLGPLSNLTKLEVIQMPRNQISDLTPIANLTALMSLDFEFNNLQTIEPIKNLTNMLELNVSANPISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTLETLTLSFNQIIDISPLKNLTNLTRLELENQTRALDAVEIDNPLILPAPVIDENGSRVQPSKVSHAGVYANGEITWEGLQSNYILNYEYALPVTIGSLTTTYSGKITQPLLEKPVDPVTPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVNPVDPVDPVDPVDPVDPVNPVDPVNPVNPDPVNPMKPVEPIIPVTLENQFTLVNQTISVNEEIATQPAKDIVKLPKTGESGMTSSLFGGLILTVTSAILLRKRKLast
1 -76.400IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali  100  1MKKTIKITTSLLLSFACVFSIGDFTKPHTVEAEIVYSLTNPKPVNEIFTDPKLAQVVADWLKLPAATSSVTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFGYGNQVSDLGPLSNLTKLEVIQMPRNQISDLTPIANLTALMSLDFEFNNLQTIEPIKNLTNMLELNVSANPISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTLETLTLSFNQIIDISPLKNLTNLTRLELENQTRALDAVEIDNPLILPAPVIDENGSRVQPSKVSHAGVYANGEITWEGLQSNYILNYEYALPVTIGSLTTTYSGKITQPLLEKPVDPVTPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVNPVDPVDPVDPVDPVDPVNPVDPVNPVNPDPVNPMKPVEPIIPVTLENQFTLVNQTISVNEEIATQPAKDIVKLPKTGESGMTSSLFGGLILTVTSAILLRKRK 539
2 -60.600IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  13  148.EVNMRTFVESDIEEDEEEQIEDTQNIEDLKEIKELNIYAGQGIESLKGLEYMENLERITIQGSDVRNIAPISQLKRLKVVDLSFNKIENVEPLVNLEKLDILELQNNRIADVTPLSQLKKVRTINLSGNKISDIKPLYNVSSLRKLYVSNNKITDFTGIEQLNKLGTLGVGSNGLVNIEPISQMSGIVELNLEKNDIKDITSLSKLTGLQSLNLEENYVSDVSSLSNLINLYELKLATNEIRDIRPIQELGKRIKIDAQRQKVFLDAYMNEEVKIPVYDVNGTALQNIEWKSEGGSITNGVIKWNSLDMKLRQYMNKHNFERKNVNTPITKEDLLTVKALKITDGKKEGITDFSGLEFMTNVEELTLQNVNMKNAEFISSLRNLKSVDLSYNQIEDIKPLHSLEDLEKLNVSDNGIKNVPELFKMQKLKTLDLSNNKLDNAALDGIHQLENLDALLVNNNEINNLDEISKVSKLNKLEMMSNKVRDISPLASLKNLQWLNLSDNKIQ............................... 719
3 -59.300IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  27  3.KKRYVWLKSILVAILVFGSGVWIN-TSNGTNAQAATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQINISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL............................................................................. 462
4 -57.200IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  20  1MKKRWNSVFKLVLMVTAILGLSLYVTTSQGVEVRAESITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLTEAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDKMPAEDITLYAQFTINSYTATFDID----GKLTTQKVTYQSLLEEPVAPTKDGYTFTKWDFATGKMPAGNITLYAQFTKNDNPNPDDPTTNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRKTI 545
5 -56.600IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  15  178.LQYLENLTSLNLSENNISDLAPLKDLVNLVSLNLSNVSANKALEDISQVASLPVLKEISAQGCNIKTLEAGAVLPELETFYLQENDLTNLTSLAKLPKLKNLYIKGNASKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNELTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITSISEITDLPRLSYLDVSVNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLINIGTFDNLPKLQSLDVHSNRITSTSVIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYSLGTMDGVPKLRILDLQNNYLNYTSSLSDLTNLTELNLRNNVY-IDDISGLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNKIENISALSDLENLNKLVVSKNKII............................... 764
6 -56.200IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  22  1.MKRNKTALRILVTLAVVLAITFWVGMSSKEVQAAVIEH-PTPINEIFTDPVLTDNVKTLLGKADVTDEVTQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLKDVSALAGLKNLKTMDLIYTDITDVTPLAGLSNLQVLNLDINQITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIAP-------------DTISDNGTYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVDGEQTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDITLYAKFT-------------------ENEEPNASSPINVEPNDNNSDNAEPNASSSNNVQENGTNEGINNLNSSGEDKVNI---------KLPITGDKLNVLPIFVGAVLIGIGLVLFRKKR 496
7 -54.700IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  23  5.CTVILFLTLLLNGFVPNAHAKTESPSADNNLQVA----PPAAIKDLFPDPAMKSLNLKKLNKKSTSDTVTQTELNSLTGFQAINKGIKSIEGVEYLQNITELDVEKNQITDIAPVANLKKLTTLLINTNQITDISPVADLANLTTFYCGNNPISDISAVQNLTKLSIFNCYTANVEDISPVKNLVNLKTLSLGSNNIHDISDIEKLTALEYLSFSNNPVENPEVIGNLTNLNTLWLYNAQIRNIDFTANLPKLKSVYLYNNQISNISEVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQIITNREIPFQKNISIENKVMDNFGNIVTPNNISDNGTYNSPTLSWNLNETKDNLSY-----------------DFTTKITILNINATYSGTVIQPLTKDSTRPIITADGKVSYPEGTTKTTTEFLTDIHATTDDGSPIEVDLNALDFGTAGSYTVTLTAVDTAGNEATPVDVTIIITSVDTSKPVITADEKVS........................................ 487
8 -54.400IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  12  1..........MFLNTNEILDYSALKYMPNLKSLTV----ANAKIKDPSFFANLKQLNHLALRGNEFSDVTPLVKMDHLDSLDLSNNKITNVAPLIEMKNVKSLYLSGNQIEDVTALAKMEQLDYLNLANNKITNVAPLSALKNVTYLTLAGNQIEDIKPLYSL-PLTDLVLTRNKVKDLSGIEQMKQLEELWIGKNEIKDVTPLSKMTQLKQLHLPNNELKDITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANEIRDVRPVIELSKTAYINVQNQKVFLEETEVNKEVKVPIYEKDGKITKIRLKGEGGTYSNDAVKWSTPGEKVYEFGVPFADTGIFFTGSVIQNVVESKADNTSKEDNTSKEDAKVEVVEFKDVPKGHWSEEAIHYLAKENIFKGYGNGQFGFGDSITRGQV--------------------ASLVQRYLKLENKVEQKERFTDTKGHMFEQDIATVAQAG......................................................... 450
9 -52.100IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  18  1.......MKEKHNPRRKYCLISGLAIIFSLWIIIGNGAKVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKAVNLT.............................................................................................................................................. 400
10 -49.900IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  25  1..........MKSKNNYFKQITTIMTVVSLLIMVLPQVAPPASINQIFPDADLAEGIRAELQKSSVTDVVTKEELESISQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISDISPLQNLTNVTDLYLVDNDISDLRPLANLTQMYSLRLGGNSISDLNPVRNMTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITNISMLEDLTNLTSLGLQNNKIDISVLKNLTHVTYLQLGYNQIVDVKIIGGLTNLTSLQLTQNHITDISPLANLTKIQYSDFSNQMITNLERNFSKTLSVPNNITSIDGTLIAPETISNNGTYDAPNLKWSLPNYLPEVKYTFSQKI.......................................................................................................... 436
11 -49.700IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  13  8.ILALFLITTVFLPFSNVKAAPTDVVNIPDPVL-------NSGLKNIIGNPFLDEITEANMATITVADLSNMSGAPGYPVT----GLIKDLTGLDKAVNMTKLYFSNSQIKNLDKIKNLPNLKKIVAVTTGLNNISALGEMPALEEVELGGDYITDFTPLLEKENLTSFSYNSYAWSEFKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQFTNVAPIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNNNITDLSNLKNFFEAMVAQGDYEGLQINNQTITLPTINIKKGATANST...................................................................................................................................................................................................................................... 315
12 -47.800IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  15  1.MKKMGVKIGLCILLIMPFTISFSANVSAEENISI----KAAQDVVNIPDPALKSYLNGLLGQPSTSDI-TEAQMDTITDVTISNASLTDLTGLDYAHNLTILHLTNTGVTDYSLVANIPSLTNLNISGSNLTTIPDLNGLTNVTNLNLSSGKLDALTKFNKLPNLTFLNLDNNSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQNVGSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYLFTTNTASSSTYFTLNGVQISGSRLSIDDTGVTVSGITKDFFDSITKSYNSPPNFNSYSVSSGTYDHYFDIDHSLTITNDSAISYGEQ--TTVTEEQFLKDVHAETDDGTPVTSDFNTIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDTKVTLNAVSADGLNADPVIILVNVVAGNEPPTPPGPGPDPTPDPTPNPNNPNINPNPDNGQSAKSEIASNPSNSEVNIALPNTGDASQATTVLIGIILAGVAILFFRKRK 587
13 -45.200IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  15  7.IVKIGVCFAVLAVPVSQTTLPVFAAEQPGLKASQDNVN--------IPDSTFKAYLNGLLGQASTANI-TEAQMDSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSIPNLSGLTNLTLLDLSHSAHDDLTKINTLPKVTSIDLSYNAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTEDTYFTMNEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPE...................................................................................................................................................................................................................................... 329
14 -42.800IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  16  4............ALKLFLATICMFIMIYPSTAAHA----EETNIVNI-PDANLKTYLNGLLKQASDAPI-TKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKLFVDLNGLVNLQSLSINGSEVTHFKTFNKLPKLTYLYAQNSKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFG-----------------QNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNT.................................................................................................................................................................................................................................................... 268
15 -41.600IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  21  60.PQKMTASSSEEAATTNSTEEE-NTPKNNLKSTSE----NSKTYAELFPDVNLAKIIAKNISGTEINAEVSEAELQTITNLVATNQNITSLTGIEHLTALENINVNNNELTTIDSLFNIPTLKSISANNNKITGFSLVKTLPELHTLEVLGNAITELD-IENQPNLVTLSADELELKKLT-LKNLSQLNGLGRIASSIS---------------IDWGDLESVT-LMNLPEIISVDISGNYLDSDIHLENLPAVKNLDISSNELTRLPKINDFPLLTTINVRSNKIDRLSKLVDVPKLATLNADKQAVTLSKTIAAGNFTIPNNVENLAGQMVTPKIISNNGTYSDQSIAWA........................................................................................................................................................................................... 392
16 -40.900IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  21  1............................................................MKQRKTSVLHVLLVVTAILGISLWVNASHGMK------AQAESIAQPAPINEIFTDPALADEVKTELGKTSVTDEVTQTDLNQITKLEADDKGINSIEGIQYLTNLNMLGVSSNQITNITPLANLTNLDSLYLGDNKISDVTPLSGLTQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQISDASPLVNMTDLTVLHLEKQQITAAPVVYQTNLVAPDILKNAYGEVVPPTTISNNGTFASPNIT......................................................................................................................................................................................................................................... 240
17 -40.100IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  20  3...............................................FNWKVVLLFVLILAFIVPVYSKAVETGKEVPKSPELLDDKSSTLKNVNTPKNLKASPLANSTIADLFPDEGMAKTIANQLGRTENNN---------FQTPTKTDWKVDDVVTEVELNRMWYLTSV-ATIGSIEGIQYLPNLYDVRLQDKQCKDLSPFNGYSQLYRLNINNGNISDISPLTELSTLNDIDLGGNNISDLSLFPKLPNLEEISLERNNISDVSPLAKFTKIKIFNLDENHITDLSSLTKMPNLQRLYVRYQTLDMEPVVTSSKYEFSTTKPVKITATKPKATIDPITSKITYSAEEMAKKPFYYTPLFPGVTYSWDENFPLNGSNSLVDFR......................................................................................................................................................... 356
18 -39.400IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  15  4.....IKSNIMKIGVCSVMVLVPLSQTSLPSFAAEEIALKESQDVVNIPDPQLKKELNLYLNQAENADITE-AQMATFRNITLNSG-IKDLTGIEYLKNITTLSI-NNINASYEPIQTLSSLEKLVINGENVNAIPDLSVLSNLTFLDLSRTNIDDFSKISNIPNLNKLDISNNKITKISELNNLPSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGDSFETDGFKNIKSSELTFDANASIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVTNDKISINQQGTLSDFTQADFDELEAFEVDSGNISKPANLANGTYSLKQIGSYRAFSVDHSVNITAQDNISYIQNDTVTPEKFLTDIKADANGGTITSDLTDKVDFTKPGNYTVTLNAQNTKGLKGEPIQVTVTIIEKTVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITPVVPIPYPDPTPDPTPDPTVPVPTPEDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDSLPESGVLLGFLTLALGIVIRKK.. 593
19 -38.200IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  17  16.MVSNPLLTFAATNDVIDNTTE-ITTDKETSSTNTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTELTEL................................................................................................................................................................... 384
20 -35.800IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  15  3.LSKILTIIVLSATVTSSLPI----PMVKAESTTANEMKTENQLLKTDPNNNLKNQLVQAGTKTYNDYF-PDDNLAKEVAETMNKNADESVT-VEELAKVTKLDARSQGIEDSTGIEYLTGLEVLNLEDNQLKSID-VSKNLNLKELTCSNNPLANLD-VSKNLALEELTCENNELTQLD-VSQNTALEYLYCPRNQLTKLD-VSKNSALRYLACDVNQLTNLD-VSKNPALTNLGCTKNQLTDLD-VSQNPNLGTLVCSDNQLTNLD-VSQNQALENLACDNNELKNID-INQALSLKELSCENNQLTNLDTTQNLALEILYCDDNQLTDL----DVRKNVNLLILFCNNNQLTNLAVGETIAKVRCNNNQLKDVSSLPDYF............................................................................................................................................................ 375
21 -32.000CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  28 1000..KNLTKLVDILMNNNQIADITPLANLTNLTGLTLF----NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKAIFNVKFHVDGKETTKEVEAGNLLTEPAKPVKE........................................................................................................................ 1411
22 -31.900IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  17  1MKKILTGLSTTLLLTVLLLTTGGDLKAKAASDLYPL----PAPIIDVFPDEGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETETITN-RAMFNNVNIVSVMEFGEDLTEFPDISTIPHLNTLFFNTPPEGVTPDYQNYPEMVTITMSGSNLIGIPDFTGMPDLSQLYMADMMITSDPDFHTIPKLSTLDLSHNQLTNLPDFQNLTNLAELNLSFNNLTNTTNFTNLSNLNNLNLDYNHLNELPSLAEINMLVNPTVLGSYSADIDTSELSPGVYNFNVQFNDAYPIQEGCVYDWVLTVN............................................................................................................................................................................................................................................. 367
23 -30.900IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  15.IQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKR-----INCAFLSKQNDIDLSGLNLSTQPP--GLQNFTSINLDNNQLTHFD-ATNYDRLVKLSLNSNTLESINHQGRNVSITHISMNNNCLRNI-DIDRLSSITYFSAAHNKLEFVQ-LESCEWLQYLNLSHNQLTDIV-TGNKEELLLLDLSHNKLASL-HNALFPNLNTLLINNNLLSEIKMYSNFCKVQTLNAANNQLEKINLLTYLSSIKSLRLDNNKITRIENTSDIRSLFPIIKKSESLNFL-NISGENNCPTIQLMLFNLFSPALKLNTGLAILSPGAFEDHSDG---DVDNELFHYTINKAYTPYNIHTEVVNQRNIKIKNMTLDEINNTYCN............................................................................................................................................................. 390
24 -30.700IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  13  27.........................................................................KAKAASDLYPLPAPIIDVFPDDGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETSTITN-AMFNNVTDVSIMEFGAKEFPDITTIPHLKTLFFADPPGRLTRNLPNYQNYPEMDTITMSGNNLIGIPDFTGMPALKQLYMSEMLITSDPNFNNIPLLITLDLSSNQLTTIPDFQNIPNLTFLDLNANLLTNTPDFQNLPKLTDLNLRHNNLTGTMVYTNLPSLESLNLDYNFLTELPSNVLDTIYVQSQNGELPDQTINQGDTCTID..................................................................................................................................................................................................... 310
25 -28.900IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  10  2....................................................................LFAPTIKAQADTVPLPAPIIEAFEAIAEAIAGELDKDSVNDTITQADLDTAIPLPSLGLTGEDLSVL-NNEVFTNAIELAIWSNNIGELPDSEALPALENIEANGANITVF-PDANYPNLTNVDLSQNNFGFNPKFVGMEGLVSINMENAGLSGYIAWMNMPNLDSLILNENHLISIPEIFLSQQLGTHSFANQTATYPTTIKQGENLKVFVPFIYQALDFIAP-SNHDLIIIKDNGRTLYEPPYPTYDGSYMYTIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE.................................................................................................................................................................................... 300
26 -27.000IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  14  50..LGLRAVERLDLDRNNITRITKFAGLKNLRVLHL----EDNQVSVIERFQDLKQLERLRLNKNKLQVLPEFQSTPKLTRLDLSENQIQGIPRFRGITDVKNLQLDNNHISCIEDFRALRDLEILTLNNNNISRILSFNHMPKIRTLRLHSNHLYCDCHLAWLSD-NIVDCRGKGLMEIP-----EGIVEIRLEQNSIKAIPAFTQYKKLKRIDISKNQISDIAPFQGLKSLTSLVLYGNKITEIAKFDGLVSLQLLLLNANKINCLRVFQDLQNLNLLSLYDNKLQTISKFAPLQSIQTLHLAQNPFVCD------HLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEVTDLRLNDNEVSVLEAFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRV-LSGLKTLMLRSNLIGCVSN................................................. 622
27 -26.300IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  16.LNKITSNTESTIKQHELVSDD--AIINELSSELVSCLGNDKFTPVSEDSNLLNMLSEFKLLREQCFRWGNTLLFENYGAYDKTGSITIEKQGEGTLPIRHKLEFISTNIAELLDLTKITDARLCKGFSDWASSVKEGASNLHSNELNLSSLSLGSVPPL--PEWIEMLSLVYNELDSIQ----PESCKELELDFNNLTEFPQV--PDGITLISVNNNLISYIDSF--PPKAKKIFICHNKLSEIPAL--PDTAKVFDCSENNIKEIRWF--PKNLKEAYIEYNKIEVIPAI--PGNLKLLCMKCNPIKEAFLMPWTLTGIRYEISQRKYIVMNPADYDKYSDMVKKHVIDGEEFIIK..................................................................................................................................................................................... 376
28 -25.700IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  12  2....KKKFVYLLLLVLFMTVLPQMLEAQAASTSWIE--------QELDGNEPFIAETEKILSKNRQD--ITLADLETIQKIHV--FGADSINKISDYKNLTALEANYGTITEVPEVGSLKELVTLNVDENNLQEFPVIFQLPKLEVLYISRGNITEIPTITTLSHLKVLDVSNQKLVTIPDILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLEHEFMYYDDGTSANILTNGVATDGDGYITIKSTLSTNSNPFAKVRVIKVTAPLKGADVTVQYLDTLATPDILSASTPKTIDGYTLTQTPTNAQGTFT........................................................................................................................................................................................................................... 377
29 -25.700IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  16.LNKITSNTESTIKQHELVSDD--AIINELSSELVSCLGNDKFTPVSEDCNLLNMLSEFKLLREQCFRWGNTLLFENYESYDKTGSITIEKNQEGTLPIRHKLEFISTNIAELLDLTKITDARLCKGFSDWASSVKEGGS-LHSNELDLSYLFLGSVPPL--PDWIEMLSLVYNELDSIQ----PESCKELELDFNNLTEFPQV--PDGITLISVNNNLISHIDSF--PPKAKKIFISHNKLSETPAI--PDTAKVFDCGYNKIQEIRYF--PKNLKEARIGYNNIEVVPAI--PGNLKILFMECNPIKEAFLMPWTLTGICYEISQRKYIVTNPADYDKYSDMVKKHVIDGEELIIK..................................................................................................................................................................................... 376
30 -22.800IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  15  1.................................................................MKKAFLCLSAIVLSLNFVWINPITG-KIETTKETNQQVNLKNNVTDIVTSLGGQTWLNEVNRQLAPKT--LTFEDLAKITTISLNNRSLTG-PEIKNLVSLQRLYLFSNKLSG-AELGELTKLTELRLDYNELSGKIP-DGLGNISEIALQNNRLVGQIPLSNRTGKNEVNVSGNQVTI-QSEPSVYSAYTYPSSTPEYSG-ANNSFISNLTNDMNLTPFLKNSPTFINLQVVY................................................................................................................................................................................................................................................ 253
31 -21.000IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  15  131........................SYLNRIKHIEIEEATLTGNFSSYFRNNVFTVLESVRIERSNLSRVTSFALAEKVIIRDNNYPTAPSLLTTEGMSNLMEVDLSGLDTSAVTTMWDMRALEELDVSHFDTSSVTNMSYMRNLEVLDVSNLDTSSVTNMYAMTSLEELDVSHFDTSSVTDMYRVEKLKKLDVSNFDTSSATAMVQMSALEKLDVSNFNTSLVTDMRAMTSLEALDVSNFDTSSVTNMAAMEKVEKLDLSTFDTSSVTNMGTMTALKSLYLDNTHAASSTDMTGTTSLSYLFVSHNVSNFNGLENT............................................................................................................................................................................................................................... 466
32 -20.800IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  19  728.........................................GEAKSVHAMPGFIWLIRSLYEMQEERLARKAARGLNVGHLKLTFCSVGPTE-LQHLRRPVALQLDYNSVGDIG-LPCLGVCKALYLRDNNISDIECALHCEQLQKLALFNNKLTDAKLLACRQNFLALRLGNNYITAAEGLRGNTSLQFLGFWGNRVGDAEALGDHQSLRWLSLVGNNIGSALMLAKNVMLEELCLEENHLQDAEGLKKNSSLKILKLSNNCITYLQALERNDTILEVWLRGNTFSLEEVDKLGCRDTRLLL............................................................................................................................................................................................................................................ 1040
33 -18.200IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  15  2.......................................................................................LKKIIALIALVVIINTVSFTSVSASTPTWLEQT----MNNNEPFIKEIE--------TETGKTRANITQTD----LEAITALRV--TGASDIANIDMLTHLTLLKAVQGTISSVNSVGNLKELKILNLNTNHLSNFPTVYQLPKLEELQLNDGTIEEIPA-NMASHLKFLTVNNNRLVKVPT-SSTGELDLFTTGNQIVTDIP......................................................................................................................................................................................................................................................... 200
34 -13.800IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  4.....................................................TSQLRPTGT-----------FCSYSAETSADIKSEITPIQIEEARASGRLYIKDCDIEYLPQL--PNEITSVTIENNNLTTLTGL--PVNTQNLSVINCEKLQITDM---STVKNLHIELTDSPFIHFIS--EGIECLTVCHCYISGVP-----ESVRYLEIKGSATDSIKNVPN--GLSSLSINSYNPENQARIDNSPSLKTLSLTGSNIILPEKL--PESVTSVTIHAEKTTWNIGVEGMPDGLDLDLQN.......................................................................................................................................................................................................................................... 232
35 -10.200IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  14  163...........................................VEDASTASALKAVNYKILENRRISIIINSSAPPHTILNELKPEQVEQLKLI-----MSKRYDGSQQALDLKGLRSDPDLVAIDVVLNRRSCMAATLRIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSL--VLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNEL......................................................................................................................................................................................................................... 469
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.