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Query: IDP05557 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1459 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSPYTFLKAIGPEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGINPLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYGVERLASYIQDKENVFDLEWTEGISYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYEREATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFYESREKLGFPLLKEEGGKRHELast
1 -130.000IDP05557 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1459 [Listeria monocytogenes EGD-e]  ali  100  1MSPYTFLKAIGPEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGINPLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYGVERLASYIQDKENVFDLEWTEGISYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYEREATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFYESREKLGFPLLKEEGGKRHE 263
2 -111.000IDP06256 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Streptococcus pneumoniae TIGR4] NP_345929 [Streptococcus pneumoniae TIGR4]  ali follow..  75  38MSPYTFLRAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLEKLGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAEVTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEISDQEMLLENFDKFEKEAGRALEEGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVAKTFVAERKRLGYPLLDEETRAKLL 300
3 -104.000IDP90793 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0704 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  55  34FHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDLKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYGLERIAMYLQNVDNVYDIVWSEFNKYADVHKQSEYEFSKYNFEVSDVKILNEQFENSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAEIYKKNLNEAE............. 287
4 -98.900IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  63  65SHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQK... 330
5 -54.400IDP92131 alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49] TGME49_019540 [Toxoplasma gondii ME49]  ali follow..  17  65MNQFIFLGQIDRSSRRVADTQKCIRANDGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKIPKDRLYASYKENFWEMADTGPCGPCSEIHYD-LEIWNLVFMQYNRETPLPAPCVDTGMGLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVD--------------------MAYRVLADHARCLTAAIADGAEPSNEGRGYVLR-RILRRAVRYARVVSLLGETFPEMKKNEEKVVR 393
6 -53.500IDP05710 gene: alaS; alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1673 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  45VATLYFDGRETPKKPRIVNSQKAIRTNDGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEPDKLRIEGNFWDIGE-GPSGPNTEIFYD-LEVWNLVFSEFNHNTPLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDV----------------------------AFKVIADHIRTIAFAISDGALPANEGRGYVLR-RLLRRAVR---FSQTLGINEPFMYKLVDIVAD 334
7 -53.500IDP05327 gene: alaS; alanyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1504 [Listeria monocytogenes EGD-e]  ali follow..  14  45VATMYFDGSVIPDNPRMANAQKSIRTNDGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGFDPDKLEIEDNFWDIG-IGPSGPDSEIFYD-LEIWNLVFSQFNHNTPLPKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGV----------------------------KYGHSQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGYILR-RLLRRAVR---YAKVLTINEPFMYKLVPVVGK 334
8 -52.600IDP04730 alanyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4284 [Bacillus anthracis str. Sterne]  ali follow..  15  45VATLYFDGRVIPQNPRITNAQKSIRTNDGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKELLRLEENFWDIGE-GPSGPNTEIFYD-LEVWNLVFSQFNHNTPLPKKNIDTGMGLERMTSIVQDVPTNFDTDLFMPM----IGATETISGEKYRNGDLEKD-----------------------MAFKVIADHIRTVTFAVGDGALPSNEGRGYVLR-RLLRRAVR---YSKKLNINRPFMFELVPVVGE 335
9 -52.000IDP90826 gene: alaS; alanyl-tRNA synthetase [Yersinia pestis CO92] YPO3305 [Yersinia pestis CO92]  ali follow..  13  44MNQFVFLGLDKRAYSRATTSQRCVRANDGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNLPKEKLWVSDNFWQMGDTGPCGPCSEIFFD-IEIWNIVFMQFNRQLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDL--------------------------------IAAVADVTGATDLSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLR-RIIRRAIR---HGNMLGAKETFFYKLVAPLIA 340
10 -51.300IDP90679 gene: alaS; alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0506 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  38MVPFIFTGEIPRPNPRKTSCQTCIRANDGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRLYVTVKDNFWQMGDTGPCGPCSEIFYD-LEIWNLVFMQYERSSPLPKPSIDTGMGLERVTAIKEGKFSNFDSSLFMPII------------------------------NEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLR-RILRRALR---HGYLLGFKQAFMYKLVDVVCD 326
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.