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Query: IDP05647 hypothetical protein CD3457 [Clostridium difficile 630] CD3457 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MGGVIRLNVKFNIKGIIYGVIALVFVIGGFIFIPSMFVEKSKPIDYTVLQRNSIPEKILDVMDKYTNEERALAAKIDNKIYIIVTRGNNKYGIEMDKIESVVEEGKDVLRVKIKYKDKEDSFPYIVVETNMSELPDRIELNATKLast
1 -75.500IDP05647 hypothetical protein CD3457 [Clostridium difficile 630] CD3457 [Peptoclostridium difficile 630]  ali  100  1MGGVIRLNVKFNIKGIIYGVIALVFVIGGFIFIPSMFVEKSKPIDYTVLQRNSIPEKILDVMDKYTNEERALAAKIDNKIYIIVTRGNNKYGIEMDKIESVVEEGKDVLRVKIKYKDKEDSFPYIVVETNMSELPDRIELNATK 144
2 -29.400IDP05589 putative lipoprotein [Bacillus anthracis str. Ames] BA_2931 [Bacillus anthracis str. Ames]  ali follow..  13  1............MKKALFSVLLFGLVFLSACVSFQNEYEDYWVIE-RYNKIGFGPSNLYEKAQEDPTMVHYSNNSISEGKRMIYLTFGTKYKNDKITVKEVKDEKDKSVIVLHIEKSKG-ENPVMYIGVPKLRDFIKIV..... 129
3 -13.900IDP05670 hypothetical protein lmo0617 [Listeria monocytogenes EGD-e] lmo0617 [Listeria monocytogenes EGD-e]  ali follow..  7  1........MKKLKSILLLMGIITFALALTACGGTEDKASTEKIET-AKAETKKKSNPNELGDYKVEILSSEVVKDFEGNNAIAIKTKFTNNSKENIQLETTVSADASMGGSEKDVQPGGTLEVTELYKLQDTQNTVDIEAT... 147
4 -13.600IDP05121 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0915 [Bacillus anthracis str. Ames]  ali follow..  12  1...MLK-------KFTTCILGGALVFNLSGCGNTSDKTSSESKETNSKQEEKNVQTTDEAKTKENTKQKNTEQTKEKSKI--EYAVNKDHTPKFDVTVKRV-VERDKVGKESIGFQKPEDGHVFIVVEAEGKN........... 124
5 -13.200IDP05448 hypothetical protein lmo2594 [Listeria monocytogenes EGD-e] lmo2594 [Listeria monocytogenes EGD-e]  ali follow..  14  1............MKKTSIIFIFCTLLFVTACSTSENQTQAT-EATGTIEQVETDAILINNFKEKKDKYNPEAAIRFDIVDKYYDETGNK------IKITDL-NKNDDVKIILTKDFPIQETSPKYVQKIILLNK.......... 119
6 -12.500IDP05607 putative lipoprotein [Bacillus anthracis str. Ames] BA_4862 [Bacillus anthracis str. Ames]  ali follow..  12  1........MDRHMKFSMFMFLGVVLIILAACTTKSVEQVAVKEVPKEIILRNEDDKTFETKIELQNYIEQQMNQDYPSDIVLIFKDKDAYDQGDKIKVSQTFE-----------------SYP..................... 110
7 -11.700IDP05485 putative lipoprotein [Bacillus anthracis str. Ames] BA_3234 [Bacillus anthracis str. Ames]  ali follow..  9  1........MNMKGRNVSVVFIAIVIFIIAGCSNMIGNEDQTIKVQLKVVTDNKQVQQVKKILNDAHFENKKVQMSRPADYHFVFQFKNPKIEAYQIWVIP............................................ 105
8 -11.100IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  10  1...MLK-------KLGILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAKKENKEN....................................................................................... 47
9 -11.000IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  9  1........MKVYVKIALLCLTFTCIFALAACKGTDEKKETNPTSENSKNEQNTSSEGKKEPEVKSNTDS........................................................................... 61
10 -10.600IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]  ali follow..  9  1........MNKKHRLAFLGLIVGVLFFFSACQHRGYYSEVTGDYLFNYNSTIVVAYDRSDA---------------MTSYYINVIVYELQKLGFYVFTQAEFPLDKAKNVIYVRIVRNISAVPF.................... 105
11 -10.500IDP06507 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN11122 [Enterococcus faecium DO]  ali follow..  9  1........MKKNSRIVMMGVALVSGLVLAGCGNGSASNSDKVELSINYYNGAISKKAMDNAKKEFSDYKLSFKQDFDTKLKASLNSKSAPYADKFVNLLDYDSETLAADFVEWKWDSCFTNDKKTQIAMPIDIGPTALFYNVD. 154
12 -10.500IDP05429 hypothetical protein lmo0791 [Listeria monocytogenes EGD-e] lmo0791 [Listeria monocytogenes EGD-e]  ali follow..  7  1..........MKKGLFSMVLVLAMVLVLSACGASRVEPKKAGEITVNAVVYNKDTDKVKDVYGEDGSKFEKEFETSFKESF------ISTFTASFSSDVNLDKQVDEFYDALRKQVNEKTSYTTKVTNDDKESPEIQFAIK... 125
13 -9.950IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630]  ali follow..  7  1........MKNK-KIMLVLSILSISIFAVGCTNAQNGSDSSKKETKSNTNVEQPKEENNTEKEVPNNKAKPTPKEETKAQSATIYSFDVDKTDLIENKVDLNKIDENTLFEELQKLKVVPESAKLNFTTKDIDGVKTGILDVSS 136
14 -9.840IDP06546 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN09092 [Enterococcus faecium DO]  ali follow..  8  1........MNIRKLIAGVVCLAAASGFLTGCGSASSTADKEEKVTVWAWDETFNIKAVNEAKKVYENEE-------------------------EIEVVTMSQDDIVQKLNTALASGNTEGLP--IVLIEDYRIQGYLT..... 106
15 -9.670IDP05515 putative lipoprotein [Clostridium difficile 630] CD1687 [Peptoclostridium difficile 630]  ali follow..  8  1MNKIVKKSI------SLMIILTIFIFMLTACEKDEQPDSVDIQ------TEDKNEIKIDEGNAKVLNIGKSEIINIDEGDKVDTSTKVENNSTFNISNVELIDENKKIISSDSKALLDMTLMPGKVAYIECGHKTFVKGVEVYA 136
16 -9.520IDP05763 hypothetical protein lmo2331 [Listeria monocytogenes EGD-e] lmo2331 [Listeria monocytogenes EGD-e]  ali follow..  7  1........MKKGI-ALLAGFMLAFSIFLTGCGGTDNTRKENHSDGSAEVKNKKDNNTSDEYVEDGLLLKVGEWTKDKDYDTKVTLEKIATLGDLNMLIKDVKVSDAEKEEFSGGKVPVTDPYYTIQVKYDLENT.......... 137
17 -9.500IDP05078 hypothetical protein lmo1340 [Listeria monocytogenes EGD-e] lmo1340 [Listeria monocytogenes EGD-e]  ali follow..  11  1........MKKSNTFLLITILVGLVFISFGCSEEKETPKKTAKEVQGVQIKTKEFQRVVGWLSKDS-----------------VLLQTKKSGVTYFEELNIYNEKKRPIFNTKESISEVQISPNILLYSAESAEKATMRI.... 118
18 -9.400IDP05046 hypothetical protein BA_3529 [Bacillus anthracis str. Ames] BA_3529 [Bacillus anthracis str. Ames]  ali follow..  12  1....MNTNIFKKNNLIKMFFALTFSFLCFAPTDTLAAEIKGSPIKGTTKQESTTPGPSYVAVETYVTVEAYFSKREYALPPARYYHQETRDGMYSLTRHSYASTGDTWIVVYK............................... 112
19 -9.390IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  13  1........MKKLL--VPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSD........................................................................... 59
20 -9.360IDP93894 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005558 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  8  1............MKLTQKISLLLAASVLAGCATAPKPIYHWDNYQSTVYEYYKSDASPEQQIAA-----------LKESIEKSRAQGLPVPPGLHAHLGMLYGNTGHTDLAMTEFNTEKSAFP..................... 100
21 -9.340IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]  ali follow..  9  1........MMTGFKKVILPVLLVVLF-LAGCNQAEVPALVLDGTITDTSLLENNNELTVN--GEKNDYASEVMITVSSNTAVT-----NATTGKAMKLADIKEEDT---VRAVFPQGSNITSP..................... 110
22 -9.330IDP05034 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_1274 [Bacillus anthracis str. Ames]  ali follow..  9  1............MNKKTIFFLLTCLLLVASTTYIICNKREQEGQEYYVTNEPAKAEEVGQRLGEVTKKIETSEKPIKNSESNIVQEKTE----FTMI............................................... 89
23 -9.180IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  7  1............MKKLIMTLFIAMLA-LAGCNTNKEEPKKEQKLEAVKVAVQTNPKEIKP-VQALVTQGKEKVTDADDVKFEVWKAGHKGKGVYAVEKTFETDGVYHIIAHTNAREMHVMPEVKVAVG................ 129
24 -9.160IDP06532 prophage superinfection immunity protein [Enterococcus faecium DO] AFK58444 [Enterococcus faecium DO]  ali follow..  11  9DGKMYKVSKPFYKKVWFWVLAVILIIIIGSALNGGSDSNKASDNGGEKVTKSSTSASSSKEEKSDT----------------FYKIGDTKVGDAEYTLNSVELTDER------NQFEENQPAQVVKITYTVKN........... 120
25 -9.160IDP02585 lipoprotein [Francisella tularensis subsp. tularensis SCHU S4] FTT1416c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  7  1........MKGLKAKIYIIFLAAVLAVISGCATDKGTQYKDGYY------ITTLNYNFNTVYNATLQAIQNGQTFDYKSNPYDISVNKNNGTDAEIVSASDSDSTDSLQVAMKKLPNNATRISIKYGSQGNSIRSSALIGIIEG 130
26 -9.130IDP05698 hypothetical protein lmo2186 [Listeria monocytogenes EGD-e] lmo2186 [Listeria monocytogenes EGD-e]  ali follow..  10  1........MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGTYSVDYTVIQGDSDSASM---ANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGNAVSVTSKNASSDTRKVS----------FPVSTLSNPVNAKIKVD. 122
27 -9.070IDP04240 extracellular solute-binding protein [Clostridium perfringens ATCC 13124] CPF_1077 [Clostridium perfringens ATCC 13124]  ali follow..  9  1...MIK---RKKALSLILSGIVCSSLILTGCGNSKEEESK-ETVNLTWYVEEEVNKYLKDKINATVDIKHIPFGDYTKKMSVISNSGEPYRKGAFLELNDLLDT........................................ 124
28 -9.040IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]  ali follow..  10  1........MKMLKKGTAVLFVMIMAVMLVACGDKEETSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIE............................................. 96
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.