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Query: IDP05668 hypothetical protein lmo0576 [Listeria monocytogenes EGD-e] lmo0576 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKKYFLCVFAVILFFTGFLFGNSPVNAAETDTSNVTYNYIDISTLTETQKNSIIKGNPNETLTNDYENYSFVYQKNTSEPTTNTDNTSDNNKNQNGTLLKAGDVGPNSYLIILGFILIGSGIGLLTLKKRYARQLLVFLVVLGGSSLLVGSIVQATENSNLKTQESQTVAKGTKETKQPESMEGYTYVGYIHTSKNNTPPVVEKGTVTVNYQDEQGNSLATSETLKGDIGQPYQTATKNIEGYQLKEVNGNTTGTFTEKAQVVTYVYQKVPVATVTVKYLDQDGNKIHDPQTISGNIGEPYDASTDKYKLQIDGYTLDTTKLPNNANGIFTNQAIEVTYIYTKEAQDVKITIKFVDSNGDPFVLTDLTTYKNGDLVPIYPNLDQYHMRLNYNQQIYNQGEAVPDIVIPAKEGETYLLPERMTFNILDDQGKQIPYVISQNADFSSTGIERWENYQSIPTNREGTLTSEDVVVTYQILVYGVLIPEPLast
1 -121.000IDP05668 hypothetical protein lmo0576 [Listeria monocytogenes EGD-e] lmo0576 [Listeria monocytogenes EGD-e]  ali  100  1MKKKYFLCVFAVILFFTGFLFGNSPVNAAETDTSNVTYNYIDISTLTETQKNSIIKGNPNETLTNDYENYSFVYQKNTSEPTTNTDNTSDNNKNQNGTLLKAGDVGPNSYLIILGFILIGSGIGLLTLKKRYARQLLVFLVVLGGSSLLVGSIVQATENSNLKTQESQTVAKGTKETKQPESMEGYTYVGYIHTSKNNTPPVVEKGTVTVNYQDEQGNSLATSETLKGDIGQPYQTATKNIEGYQLKEVNGNTTGTFTEKAQVVTYVYQKVPVATVTVKYLDQDGNKIHDPQTISGNIGEPYDASTDKYKLQIDGYTLDTTKLPNNANGIFTNQAIEVTYIYTKEAQDVKITIKFVDSNGDPFVLTDLTTYKNGDLVPIYPNLDQYHMRLNYNQQIYNQGEAVPDIVIPAKEGETYLLPERMTFNILDDQGKQIPYVISQNADFSSTGIERWENYQSIPTNREGTLTSEDVVVTYQILVYGVLIPEP 487
2 -79.500IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  17  790.TVNYVYKANDYTLTSTYKDAQGKELKTPVIDSQHINDTYTTTGATIPGYTLVAAPANQSGTFGAANVTVNYVYKADDYTLTSTYKDANGKELKAPVVTYHTKDNYSTSAATIPGYTLVAAPANQTGTFNTSNVTLTSTFKNVQGTELKPAIVKKGFIIKD-GYSTSGVTIPGYTLVATPSNKKGTFGASNVTVNYVY---KANGYALITTYKDTQGKDLKPLATKTYNINDPYTATALNIPGYTLTTTPANEKGVFGASDETVNYVYKA-NDYTLTTTYKDANGKELQAPKVDAYHIQDTYKTTAA----VIPGYTL--VAIPKNDQGTFGANNVTVNYVYQTNDY--TLTATFKDAQGNELKATEVDAYHIHDTYTSKAVIPGYTLEKTPTNETGTFNASDIQVNYVYKAND-----YQLTSTFKDQQGNEIALPTYHIHEAYTTKARLIPGYSLVPKNQIGAFGTSDVTVNYVYKKDAIIKPI. 1286
3 -59.600IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  20  1...............MKHAKKSLFTFIIFMTILSITFNPFAPLMLNLPAPQVDQLYIGDDYITGKLQQEVPMHYPGNAA-------------------------------------------------------YVLFNNKQYNITDYTVENDVNFRLKLPKTLEAGDTL----YFTITGNVLDPVAYPGQESYKLAGPFSPIEKANIQVNYVDETNQTLATSDTLSGKLGETYTTSPKAIDGYQVKETPTNATGTYTTNTETIQINYVYEKTNVSVEYINEATNESIAPTETLSGKIGTTFQAEVK----EIDGYEL--SQVPSNQSGTYTDQTQSVIFKYKKITVAKDVTVTYKDTKGNQLADPVILKGDIGSTF--------------------------------------------------------------------ETEAKSFKGYKLTPSNHSSVFTSDSQEVEYVYSKDDAVITP. 354
4 -56.300IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  22  454.......KADGAPVTVKYVDADGNDLATSDTLNGKIDAPYQTSAKSLSGWTVKTTPNNATGVFTNSKQTVTYVYEKADGAPVTVKDGDGNELATSDTLNGKIDAPYQTTAKSLSGWTVKTTPNNATGVFTNSKQTVTYVYE------------------------------------------------------------KADGAPVTVKYVDADGNELATSDTLNGKIDAPYQTTAKSLSGWTVKTTPNNATGVFTNSKQTVTYVYEKADGAPVTVKYVDADGNELATSDTLNGKIDAPYQTTAE----SLSGWTV--KTTPNNATGVFTNSKQTVTYVYEKADGA-PVTVKYVDGDGNELATSDTLNGKIDAPYQTTKSLSGWTVKTTPNNATGVFTNSKQTVTYVYEKAD----GAPVTVKYVDADGNELATPNGKLDTSYAVTAKNLSGWKLTPSNANGVFTTDAQTVTFVYAKQEDDPKK. 869
5 -48.100IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  26  314..................................................................................................................................................................................................VPIKVTAPLKGADVTVQYLDSNGDTLATPDILSGNEGDAYASTPKTIDGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSAAPVTVKYLNEEGKILTASDNLTGNVDDPYQTK----AKEFAGYTLDESKLPTNASGVFKTNAQTVTYVYKTIPASHDSTMNVGDTWSAKDNF-DSAVDSLGVAVPFDEKVDGSVDTTKAGVYPVTYSFAGDSVTIKVTVKATVVPAPPITPIKPVVPAPA-NTPSTQQTPTKQSGTLKIKATEQPIVAGNLKLTGDNLWDSVLYS......... 603
6 -38.900IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  14  53...........................................................................................................................................................................................................TSTLTFPTLTNQTQEDYKLEIKLALPSGMNYTDLQVSVGGEDITNQ--VGTTSFDNSTNTVTFKFDKKVKFDWKTSYSGEGGEAKIDSLVATATATSEDKAGNKSTS--------GSLKPKDISAPVVKAEETEITYSPGSD----VTEEQFLTDIHASVTDNYDSTISLTSNFTSAVNLADYSVNVQATDKAGNVSNTLNVTVHVSTPAPV--AGANITVNHLDSNGNKIAESTGVVNSNYQSESKKITGYETTPTNATGTFTDTPQTVDYIYKKDTVTPTP. 338
7 -32.100IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  23  315..................................................................................................................................................................................................TFLIDILPVPAHDLTVNYVDEAGAEIHEPQTVSGNVGDDYDVTTPEIDKYELEQMPTNGLGTLSSEAQTVTYVYKKVNGAPVTVKYEDQNGVEITTSDVLTGKLDATYQSKAK----EIAGFTLDNSKLPANASGIFETNPQTVTYVYQAVPATAHDSTIYVEDKWSAEDNFDSAVNSVGAAVSFDDEVEGTVDTTKAGVYPVTYSFAGESVTINVTVKAKDLPAPPVTPTKPVVPIQPTNPDQPDIQAAPGE-----------HQASTDKSEALKVTVAQKEQPTVAGNLKP 602
8 -29.000IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  13 1179IVRKIPAPEITADKEITYPKFDEVSEAEFNDIHATISDKNVAITSNFSDYTVTLNATNEDGVKATPVEVIVHVQQGERPVITALEDIHATSSDGQSSTVITSNFQTATNFKTAMSYTVTLNAVNEDGI-SAEPVAVTVTINKEPAAALKADAEVSYAKNEAVTSVVDRSKTGDYTVTINATNEDGAVSTPIEVIVHIEAESPVITANAEVKYNKHEQTDERREANVEIKTDFAEKVDINKVGTYTVTLTATNEDGQAAN-PVEVSVIVSDAAAEKVNVKYVDENGSEISAAETLTGNLDETFSIDAK----SIAGYKC-----DATLSGVFSTVEQTVVFHYKA-IKPGVVTIKYEDTNGKAVDEDKQITGEVGDDFEAEQTVSGYSCRAI---ASGKITEEPQTITFTYSTATPSKKSGEITVQYVDESGKKLADSTGNIDDSYSVEAKAIEGYSVVDDSAKGVFTEKSQTVTFKYKKNTQVSKD. 1718
9 -24.100IDP05082 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2179 [Listeria monocytogenes EGD-e]  ali follow..  32  966...........................................................................................................................................................................................................SVAPVTVQYVDQNHKQIASPETLTGAYGEKFTAKQKKINNYSLVKIPANVSGTFNEKAQTITFIYQKVTAGRIIVNYVDKNGEKIADSIVLNGKLNSSYTTSSK----KISGYKL--YQTPKNATGKFLNTSQTVTYVYERTS---NLSISSSNKGTENVKKLAKL-PHTGDSTTTN........................................................................................................... 1132
10 -23.800IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  30  509............................................................................................................................................................................................................GEDVTVHYLDDKGEKLADDEVLSGNLDDPYTSSAKDIPDYTLTTTPDNATGTFTTTSQSVTYVYTKNAAEPVTVNYVDDTGKTLSPSEILNGNVGDTYNAT----AKQIDGYTL--SAEPTNATGQFTSSAQTVNYIYTKNPEKGVVEIHYVDEDNKQLNSTTEISGTIGDNYTTEPKIEGYTLTTTPGNATGTFTTGSQTVTYVYTKNIE--AAEPITVNYVDANGKTLAPSNGNVGDTYKATAKQIDGYTLEPTNATGQFTSSAQTVNYIYTKNTNTDQP. 792
11 -9.730IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  24  657.....................................................................................................................................................................................YTEDSSGNRSETVTITVKVPEARIGKITIQYMDSENNELAESNTITGEVGETYETLAKEIEGYTLKENPANSSGVFEETRQTIQYIYVKDIINPEFPVYSENNVTPELPSNNNNSVNGSRQTPSKSVKKQSKAYSKINQMPMNLPETG.............................................................................................................................................................. 804
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.