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Query: IDP05675 hypothetical protein lmo0953 [Listeria monocytogenes EGD-e] lmo0953 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst MKNKVGIIAGAVGAVAGVLACAAVYVVKKQQPPTPFDEVNDIRTRYADKEISETELEENNMISEGGVSSLQYEEKLast
1 -69.900IDP05675 hypothetical protein lmo0953 [Listeria monocytogenes EGD-e] lmo0953 [Listeria monocytogenes EGD-e]  ali  100  1MKNKVGIIAGAVGAVAGVLACAAVYVVKKQQPPTPFDEVNDIRTRYADKEISETELEENNMISEGGVSSLQYEEK 75
2 -6.780IDP90818 gene: dnaE; DNA polymerase III subunit alpha [Yersinia pestis CO92] YPO1059 [Yersinia pestis CO92]  ali follow..  23  840.....GEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEK--LIMSGAFDRLGPHRA 907
3 -6.750IDP90928 gene: dnaE; DNA polymerase III subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC2245 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20  834.....GAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEK--LILAGALDRLGPHRA 901
4 -5.500IDP05221 hypothetical protein BA_4349 [Bacillus anthracis str. Ames] BA_4349 [Bacillus anthracis str. Ames]  ali follow..  14  4........................YYVPQVYPYVNYYPVYDTSRQYELYRQQQVPQLLQIPSQQPTQDQKPYSN. 53
5 -5.390IDP95251 ferric acinetobactin receptor [Acinetobacter baumannii ATCC 17978] YP_001085406 [Acinetobacter baumannii ATCC 17978]  ali follow..  17  160..ERIDVLKGPSAMLNGMPPGGTVNLVPKRAGDDPLTRFTDIGRRFGENKEFGVRF---NSVYRDGEGPIKEQEK 246
6 -5.360IDP91017 gene: fcuA; ferrichrome receptor, TonB dependent [Yersinia pestis KIM 10] y2556 [Yersinia pestis KIM10+]  ali follow..  20  199..ERVEVFKGANAFINGISPGGMINLEPKRAGDTPLTRVTDVGRRYGDNDQYGVRV---NVLHREGETAIKDEKN 286
7 -5.310IDP06426 gene: A16L; A16L [Monkeypox virus Zaire-96-I-16] NP_536553 [Monkeypox virus Zaire-96-I-16]  ali follow..  31  75......................IFVLFEQENIPPPFRLVND.................................. 93
8 -5.280IDP04446 gene: glnE; glutamate-ammonia-ligase adenylyltransferase [Yersinia pestis CO92] YPO0653 [Yersinia pestis CO92]  ali follow..  14  789...RARIVYGSPKLHQQFDAIRQQILCRHREDPQLQQEVREMREKMRNHLGSKQRDIFDIKADAGGITDIEF... 857
9 -5.270IDP91645 acyl-CoA dehydrogenase [Mycobacterium tuberculosis H37Rv] NP_215862 [Mycobacterium tuberculosis H37Rv]  ali follow..  11  237..ERMSIAGQIAASCQRAIGITLARMMSRRQFGQTLFEHQALRLRMADARVDLLRYALHGIAEQGRLEL...... 305
10 -5.200IDP00083 gene: caiA; putative acyl-CoA dehydrogenase, carnitine metabolism NTL01ST0073 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  240..ERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHM---AIKLNSMKNMLLEAAWKAD.... 305
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.