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Query: IDP05680 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1221 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLEQLQTLKSEAETQINEASDLKTLNDLRVKYLGKKGPMTEIMKQMGKLSAEERPKMGSLANEVRTALTEAISSKQQILETEAINEKLKSETIDVTLPGTAPSIGTKHLLTQVIEEMEDMFIGMGYEIAEGPEVELDYYNFEALNLPKDHPARDMQDSFYITENTLLRTQTSPVQARTMEKHDFSKGPIKVICPGKVYRRDNDDATHSHQFTQIEGLVVGENITFADLKGTLTVLAKTMFGEEREIRLRPSFFPFTEPSVEMDISCFKCGGKGCRVCKGTGWIEILGSGMVHPNVLEMSGIDSTRYSGFAFGLGPERVAMLKYAVDDIRHLYTNDLRFTKQFQSTETGEILast
1 -134.000IDP05680 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1221 [Listeria monocytogenes EGD-e]  ali  100  1MLEQLQTLKSEAETQINEASDLKTLNDLRVKYLGKKGPMTEIMKQMGKLSAEERPKMGSLANEVRTALTEAISSKQQILETEAINEKLKSETIDVTLPGTAPSIGTKHLLTQVIEEMEDMFIGMGYEIAEGPEVELDYYNFEALNLPKDHPARDMQDSFYITENTLLRTQTSPVQARTMEKHDFSKGPIKVICPGKVYRRDNDDATHSHQFTQIEGLVVGENITFADLKGTLTVLAKTMFGEEREIRLRPSFFPFTEPSVEMDISCFKCGGKGCRVCKGTGWIEILGSGMVHPNVLEMSGIDSTRYSGFAFGLGPERVAMLKYAVDDIRHLYTNDLRFTKQFQSTETGEI 350
2 -129.000IDP04618 phenylalanyl-tRNA synthetase subunit alpha [Bacillus anthracis str. Sterne] BAS4456 [Bacillus anthracis str. Sterne]  ali follow..  70  1MEARLKELKQKALELIEEAKELKGLNDVRVAYLGKKGPITEVLRGMGKLSAEERPRMGALVNEVREAIQTRLDDKISNLEKAVIEAKLATETIDVTLPGRPVETGCHHPLTAVVEQIEDVFIGMGYEVAEGTEVEKDYYNFEALNLPKDHPARDMQDTFYITEETLLRTHTSSVQARTMENNKE-KGPIKIICPGKVYRRDDDDATHSHQFMQIEGLVIDKNIRMSDLKGTLQVFVKKMFGEDREIRLRPSFFPFTEPSVEMDISCMMCHGKGCGTCKGTGWIEILGAGMVHPNVLEMAGYDSKEYQGFAFGMGAERIAMLKYGVDDIRHFYTNDVRFLQQFKRA..... 344
3 -123.000IDP90648 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC1219 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  46  1.MQHLQEIIANATSAINAAESLVALDEVRVQYLGKKGELTVQLQSLGKLPPEERRTAGQEINVAKEAVQKALAERKDALQSAELEAKLAAETIDVTLPGRRIENGGLHPVTRTIERIESFFGELGFTVESGPEIEDDFHNFDALNIAADHPARTDHDTFFFNPKLMLRTHTSGVQ---IRTLEERQPPLRFIAPGRVYRND-YDQTHTPMFHQVEGMLVDENVNFAQLKGILHDFLCNFFEEDLEVRFRPSYFPFTEPSAEVDVKG-----------KNGKWLEVLGCGMVHPNVLRSVGIDPEKYSGFAFGMGVERLTMLRYGVNDLRAFFENDLRFLKQFK....... 327
4 -121.000IDP90652 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0897c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  42  2.........QNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDEAKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPVMSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLRTQTSPVQ---IRTMLAQKPPIRMIAPGAVFRRD-FDITHTPMFHQVEGLVVEEGQKVSFANLKSVEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLGCGIVDPNVYNFVGYE--NVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR....... 330
5 -118.000IDP90756 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Yersinia pestis CO92] YPO2429 [Yersinia pestis CO92]  ali follow..  47  1.MPHLAELVAKAKAAVEGAQDIAALDLVRVEYLGKKGHLTLQMTSLRELPAEERPAAGAVINQAKQEVQEALNARKEKLESAVLNARLAAETIDVSLPGRRMENGGLHPVTRTIERIETFFGELGFSVESGPEIEDDYHNFDALNIPAHHPARADHDTFWFDATRLLRTQTSGVQ---IRTMQEQQPPIRIIVPGRVYRND-YDQTHTPMFHQMEGLIVDRDISFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMG-----------KNGKWLEVLGCGMVHPNVLRNVGIDPEIYSGFAFGMGMERLTMLRYGVTDLRAFFENDLRFLKQFK....... 327
6 -118.000IDP90931 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Salmonella typhimurium LT2] STM1337 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  47  1.MSHLAELVANAAAAINQASDVAALDNVRVEYLGKKGHLTLQMTTLRDLPPEERPAAGAVINAAKEQVQQALNARKAELESAALNARLAAETIDISLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDATRLLRTQTSGVQ---IRTMKAQQPPIRIIAPGRVYRNDY-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMG-----------KNGKWLEVLGCGMVHPNVLRNVGIDPEIYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK....... 327
7 -116.000IDP90840 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Shigella flexneri 2a str. 2457T] S1634 [Shigella flexneri 2a str. 2457T]  ali follow..  47  1.MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDATRLLRTQTSGVQ---IRTMKAQQPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMG-----------KNGKWLEVLGCGMVHPNVLRNVSIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK....... 327
8 -116.000IDP06044 gene: pheS; phenylalanyl-tRNA synthetase subunit alpha [Helicobacter pylori J99] NP_223695 [Helicobacter pylori J99]  ali follow..  37  2.........HTLIERLEKVTNSKELEEARLNALGKKGVFADKFNQLKNLNGEEKNAFAKEIHHYKQAFEKAF-ELKKKAIMELELEERLKKEKIDVSLFNAIKTSSSHPLNYTKNKIIEFFTPLGYKLEIGSLVEDDFHNFSALNLPPYHPARDMQDTFYFKDHKLLRTHTSPVQ---IHTMQEQTPPIKMICLGETFR-CDYDLTHTPMFHQIEGLVVDQKGNIRFTHLKGVIEDFLYFFGGVKLRWRSSFFPFTEPSAEVDISCVFCKQEGCRVCSHTGWLEVLGCGMVNNAVFEAIGYE--NVSGFAFGMGIERLAMLTCQINDLRSFFETDLRVLESF........ 328
9 -93.800IDP92038 phenylalanyl tRNA synthetase isoform, putative [Toxoplasma gondii ME49] TGME49_034500 [Toxoplasma gondii ME49]  ali follow..  23  150VKTLLDVIQGQRDGNQDDAAALFKQLSELTATASPEKALQDLKKRKLVELRKVKYLKLQKGPKFSLHLMKPVADLTAELLIGDAWEKSNFKEYNFFAAGKRIRRGAVHPLMQVMKQFKQILYCMGFEEMPNQYVESSFWCFDSLFMPQQHPARDVQDTFFLQAPKILRTHTTASSARMLYGLAQEFRPRKFFSIDRVFRNETLDATHLAEFHQVEGLVADRGLTIGHLMGVMETFYKQIGIE--QLKFKPAYNPYTEPSMEIFGYHA----------GLKRWIEVGNSGIFRPEMLLPMGL-PEDVTVIAWGLSLERPTMIRYGISNIRQLFGHRALL............ 522
10 -14.000IDP05569 asparaginyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4454 [Bacillus anthracis str. Sterne]  ali follow..  13  23VSGWIRNLRDSKAFGFIELNDGSFFKSVQIVFDTELDNFKEIAKSVKVEGKVIATPGAKQPFEIKAEKIDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVSIAAFAIHQFFQERGFVHVHTPIIEGAGEMFRV-NVPKGEDGQVDESKDFFGKETNLTVSGQLNAEAYALAFR------DVYTFGPTFRAENSNTTHAAEFWMVEPEIA---AELGDVMNLTEDMLKYAFVTDYPKDIKAFYMRLNDDGKTVAATDLLVPGIG----------ELIGGSQVLVDRIKELGMNEEDYWWYGFGLGFERFLMYITGMANIRDV................... 451
11 -13.900IDP05209 gene: asnC; asparaginyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1494 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  36LRDGTGFMQGVVVKSEVDEEVFKLAKEITQE---------SSLYVTGTITEDNRSDLGYEMQVKSIEVISEAHDYPITPKNHGTEFLMDHRHLWLRSKKQHAVMKIR---NEVIRATYEFFNKDGFTKVDPPILTAS----------APEGTSELFHTKYFDQDAFLSQSGQLYLEAAAMAHG------KVFSFGPTFRAEKSKTRHLIEFWMIEGEMA---TNHAESLEIQEQYVTHVFITNYPTKIKPFYMQPNPENEET--------VLCADLIAPEGYGEIIGGSELLEQRVKEHGLDEEAYSYYGFGLGLERTVAWISGVEHVRET................... 418
12 -13.800IDP05333 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS2031 [Bacillus anthracis str. Sterne]  ali follow..  12  52.......LENEFAGFKVDVESIVHVIGEIVETSKTELGVEVLAHEVKILNGAEPLPFEINKKKLQVGLDQLLNERVLSLRHERTTAIFKVK-------------------STLVQSFSELLIENDFTRIFTPKIVSQ---------GAEGGANVFKLPYFQKEAYLAQSPQFYKQMMVAGGLE------RVFEIAPVYRAEHHNSSHLNEYISLD-VELGFIHDFHEVMQLETDVLRYMFQQEKELQLLQIEVPVITEPKEARPMYTMPNNENSAITDSFDLLEITSGAQMLLDSFKEKGLHPDKFQSYGFGIGLERIVYKLLELSNVREA................... 420
13 -13.800IDP90531 RecName: Full=Asparaginyl-tRNA synthetase; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS Q9KSF9 [Vibrio cholerae]  ali follow..  11  50IQAVVPNNLNNYDNEVLKLTTGCSVEVTGKIVESPASGQAELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVARVR-------------------NCLAQAIHRFYHEQGYFWVSAPLITAS-STLDMENLPRTDAGKVDYNQDFFGKETFLTVSGQLNAEAYACAIS------KVYTFGPTFRAENSNTSHLAEFWMVEPEVA---ADLNTVAKLAEDMLKYVIVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIG----------EIIGGSQREERLMREFGIDPEHMDWYGFGLGFERLVSYVTGMGNVRDV................... 454
14 -13.600IDP05239 gene: ansB; asparaginyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1896 [Listeria monocytogenes EGD-e]  ali follow..  11  36LRDGTGFMQGVVVKAEVGDDIFATAKALTQE---------TSLYVTGTINEDTRSPFGYEMAVSSVEVISESHDYPITPKEHGTEFLMDHRHLWLRSNRQHAIMKIR---NEIIRASYEFFNKEGFLKIDPPILTGS----------APEGTTELFHTKYFEEDAFLSQSGQLYMEAAAMAFG------KVFSFGPTFRAEKSKTRHLIEFWMIEPEMA---YKLEDSLQVQENYVAFLFITHYPKAIKPFYMDQVVLCADMIA---------------EGYGEIIGGSERIHDLMEDFDLDQEAYSWYGFGLGLERTVAWISGTEHVRET................... 418
15 -13.600IDP90728 gene: asnC; asparaginyl-tRNA synthetase [Yersinia pestis CO92] YPO1412 [Yersinia pestis CO92]  ali follow..  13  41VYDGSCFDPLQAVVNNTLPNYQDEVLHLTTCSVEVTGTVVASPGEGQSFEIQATAI--NVVGWVDDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVAR----------HTLAQAIHRFFDENGYFWVSTPLITAS-STLDLENLPRTDTGAVDFSEDFFGKEAFLTVSGQLNGETYACALS------KVYTFGPTFRAENSNTSHLAEFWMVEPEVA---ASLDDVAGLAEKMLKYVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIG----------EIIGGSQREERLLAEMGLNKEDYWWYGFGLGFERLISYVTGVQNVRDV................... 454
16 -12.900IDP05307 lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0362 [Yersinia pestis CO92]  ali follow..  13  20..............................................................................................................AAIMAEIRRFFADRGVLEVETPTMSQA--HLVPFETRFVGPGAADGLTLYMMTSPEYHMKRLLAAGS------------PIYQLGRSFRNEEAGRYHNPEFTMLEWYRPHYDMYMNEVDDLLQQILDCNSAETLSYQLQLLFTVGVEPYIHFPASQASLAEISTEDHRVAERFEVYFKGIIDMNLIAALKQGLPDCSGV--ALGVDRLVMLALNAERLSDV................... 317
17 -12.700IDP01693 gene: yjeA; lysyl-tRNA synthetase [Salmonella typhimurium LT2] STM4344 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  20..............................................................................................................AAIMAEIRRFFADRGVLEVETPCMSQA--HLFPFETRFVGPGHSQGINLYLMTSPEYHMKRLLAAGC------------PVFQLCRSFRNEEMGRHHNPEFTMLEWYRP--HYDMYRLMNEVDDLLQQVLDCQPAESLS--FTMGVEPHIHFPASQASLAQISTEDHRVAERFEVYYKGIIDQNLLDALAAGLPDCSGV--ALGVDRLVMLALGAESLADV................... 317
18 -12.000IDP90685 gene: lysS; lysyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0401 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  79.........EDEDTNLQIYFSKDSVGEELYTILKKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKRYVDMIMNVEVRKDFLVR--SKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHNSLGVERFLRIAPELYLKRLIVG----------------AVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHNYKLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLIEDFDNYVEEKLINPTFVEACEMDEDFVNALGQGIGIDRLVMLLTNKKSIRDV................... 484
19 -11.900IDP04576 lysyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS0076 [Bacillus anthracis str. Sterne]  ali follow..  13  92IYVRKDAVGDEEYELFKTADLGDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHG---KDVEQRYRQRYLDLITSMESRETFVTR------------------SKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVG----------------KVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKIMKLTENMVAHIAKQVLGTTTIQYGDYEINLEPEWTRLHMVDAIKEHSGADFWNPMSFEQKVEDKLIQPTFIEAHMMDDDYIEALGLGIGIDRLVMLLTNAPSIRDV................... 488
20 -11.900IDP02443 gene: lysS; lysyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo0228 [Listeria monocytogenes EGD-e]  ali follow..  14  92IYIRKDAIGEDAYAVFKLADLGDIIGIKGTIFRTNTGELSVKATEFTLLSKSLRPLPDKYHG---KDVEQRYRQRYLDLITNEESQNRFVMR------------------SKILKYTRDYMDNQGFLEVETPVLHTIAGGAAAKPFITHHNALDMELYLRIALELHLKRLIVG----------------KVYEIGRVFRNEGTSTRHNPEFTMLESYAAYEDYEVMDLVEGLVSTVCKQVNGTTEITYGEYKVDLTPNWRRIHMADAVKEYVGVDFWNVTSFETYVEEKLIQPTFVEAHGMDADFLEALGLGIGIDRLVMLLTDAPSIRDI................... 488
21 -11.800IDP06319 gene: lysS; lysyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] NP_345214 [Streptococcus pneumoniae TIGR4]  ali follow..  15  87IYVRKDAVGEENYEIFKKADLGDFLGVEGEVMRTDMGELSIKATHITHLSKALRPLPEKFHG---TDVETIYRKRYLDLISNRESFERFVTR------------------SKIISEIRRYLDQKGFLEVETPVLHNEAGGAAARPFITHHNAQNIDMVLRIATELHLKRLIVG----------------RVYEIGRIFRNEGMDATHNPEFTSIEVYQAYADFQIMDLTEGIIQHAAKSVKGDGPVNYQGTEIKINEPFKRVHMVDAIREITGVDFWQDMTFEEFVEETLIQPTFVEATGIDYDYIEALGLGIGIDRLCMLLTDTTTIRDV................... 484
22 -11.800IDP90947 gene: lysS; lysyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] SAR0518 [Staphylococcus aureus subsp. aureus MRSA252]  ali follow..  13  90IYVRKDQVGDDEFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHG---QDIEQRYRQRYLDLITNEDSTRTFINR------------------SKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHNALDATLYMRIAIELHLKRLIVG----------------KVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYHIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSFEQKVEETLIQPTFIEAHEMDEDYIEALGLGIGIDRLVMLLTDSPSIRDV................... 486
23 -11.700IDP90637 gene: lysS; lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0888 [Yersinia pestis CO92]  ali follow..  14  89.........QDVGGRIQLYVSRDDLPEGVYNEEFKKWDLGDILGARGKLFKTKTGELSIHCSELRLLTKALRPLPDKFHGLADQETRYRQRYLDLIANDESRHTFKVR--SQVMSGIRSFMVEKGFMEVETPMMQVIPGGASARPFVTHHNALDIDMYLRIAPELYLKRLVVG----------------RVFEINRNFRNEGVSPRHNPEFTMMELYMAYADYKLIVLTEELFRTLTETILGSSVVQYGEQTFDFGKPFAKLTMKEAICKYRPETNVADLDFEETAESHLIQPTFIEAMFYDEDYITALGLGIGIDRMVMLFTNSHTIRDV................... 495
24 -11.200IDP90889 gene: lysS; lysyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC0664 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  121..............................DIIGVQGALHKSGKGDLYVNMEQFQLLTKALRPLPEKFHGL----------TDQEMRYRQRYVDLIVNENSRNAFIVR--SKVMSAIRNFMISKQFMEVETPMMHVIPGGASARPFITHHNALDMPMYLRIAPELYLKRLVVG----------------RVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKLMDLTEELLSSVALEVLGSTSMPYGEHTVEFGGKYARMSMFDAIKHYNPNHAQIQALFGETAEPKLMQPTFIEAMFYDADYITALGQGIGIDRLVMLLTNTHTIRDV................... 502
25 -11.100IDP06134 gene: lysS; lysyl-tRNA synthetase [Helicobacter pylori J99] NP_222891 [Helicobacter pylori J99]  ali follow..  13  87AYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSIHALEFHILSKTIVPLPEKFHG---SDIELRYRQRYLDLIVNPGVKDVFKKR------------------SLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVG----------------AVFEINRNFRNEGMDHSHNPEFTMIEGISKGILEKEDRLLAYLLELLAEAFDHFVEHKLINPTFVTEYPGKEIANGFSELNDPLDQLERFKNQVAEKEKGYMDEDYVWALEMPPTA----GQGIGIDRLVMLLTGAKSIKDV................... 482
26 -10.700IDP90630 gene: aspS; aspartyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0640c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  57AHEIASNARNEFVLITEGTIRPRGEGLVNPKL--KTGEIEVVVSKLTIENESAVPPFAIADESVNEELR--LKYRFLDLRNPKLYENFALR-------------------SKACIAARNSLANMGFLEVETPILTKATPEGARDYL----PSRVHQGEFYA-----------PQSPQLFKQLLMCSGFDRYFQIAKCFRDEDLRADRQPEFTQID--VEMSFCEQKDVIKVAETFLKDMFEQNDDGSYSAMHHPFTMPKNIDETDLEEISSIAYDVVLNG--VELGGGSIIQQKVFKLLNIDEEQLDALSFGIGLDRLIMLVTGANSIREVI.................. 547
27 -9.800IDP05303 gene: aspS; aspartyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1685 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15  59ALKIAETVRSEYVVEVQGTVTKRDPETVNPKI--KTGQVEVQVTNIKVINKSETPPFSINEENVNVDENIRLKYRYLDLRRQELAQTFKMR-------------------HQITRSIRQYLDDEGFFDIETPVLTKS--------TPEG-PSRVHDGEFYA-----------PQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVD--IEMSFVDQEDVMQMGEEMLKKVVKEEDAKRYVAAHHPFTSPKEADIAKLGTAPEEAEANAYD-NGYELGGGSILQEKMFEVLGFTKEQLDAFKYGLGLDRLVMLLTNRTNLRDTI.................. 555
28 -9.400IDP05234 gene: aspS; aspartyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1519 [Listeria monocytogenes EGD-e]  ali follow..  15  59ALEIADSVRNEFVVTIKGTVHARGEKAINEKL--ATGKVEVLAEEITILNTSKTPPF-YIEDGVNVSDELRLKYRYLDLRRPEMNNIFKMR-------------------HTVTRTFRNKLDALGFFDIETPYLTKSTPEGARDYL----PSRVYPGNFYA-----------PQSPQILKQLLMTAGFDKYYQIVRCFRDEDLRGDRQPEFTQID--LETSFLTKEEIQAITEDMLVDVVKEAKNIRYVSAHHPFTLPKEEDIPLLETDSSKVMAEAYD-NGYEIGGGSLVQESMFRALGFTDESMDALEYGLGLDRIVMILAGRNNLRDTI.................. 554
29 -9.380IDP90689 gene: serS; seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0389 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  41EKIALEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPNIPDECVPVGEDENENVELKKLNPPSFDFTPKELDFMRGVKISQSRFCVLKLVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLP-----KFKEDMYKVDDEDLYLISTSEIPVTNLEILASETLPIKMTCYSACFRKEAIIRQH--QFEKVELVSITKPEQSDSVFNEMLECASDLLSS-----LGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNKYREISSVSNCRDFQARRAKINEQGKNELVHTLNGSSLAVGRTLVAIMENYQDKE-DVLKKY........ 410
30 -9.200IDP06256 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Streptococcus pneumoniae TIGR4] NP_345929 [Streptococcus pneumoniae TIGR4]  ali follow..  12  7.............................................................................................................FQEIILTLQQFWNDQDCMLMQAYDNEKGAGTMSPYTF----------------------------------LRAIGPEPWNAAYVEPSRRADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLEKLGILEHDIRFVEDNWENPSLGWEVWL----------------DGMEITQF------YFQQVGGLATGPVTAEVTYGLERLASYIQEVDSV...................... 178
31 -9.060IDP05687 gene: hisS; histidyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1520 [Listeria monocytogenes EGD-e]  ali follow..  16  21..............................................................................................................HFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYT--FQDKGGRSLTLRPEGTASVVRAFVEHKQPIKMYYNEPMFRYERPQGGRQRQFTQIEALGSDDPSIDVEVISLAMEFFRKIGLTNIKLVINSDY--YNHTTFEIMSVEEGFGAKT----------TLCGGGRYH-GLVREFG--GPDTPGMGFGIGVERILLAL............................ 317
32 -9.010IDP06149 gene: serS; seryl-tRNA synthetase [Helicobacter pylori J99] NP_224091 [Helicobacter pylori J99]  ali follow..  13  42QLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELENNKIKLNELSKSVGEAEQEMDLKLSIIPNLVDEKTPLGASEEDNIEIKKILTPRNFTIDFESGVKLAKSRFSVIRLIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLP-----KFKEDVFKIENENLYLIPTAEVTLTNLTIISVENLPIKMTAHTPCFRSEAMIRQH--QFDKVELVAITHPKESDAMQEHMLESASEILKA-----LELPHRFVQLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLSLAVGRTMV.............................. 392
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;