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Query: IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKILSLLVAFVCLWSILLPGQEADAAAKINSWDLVDSSKHLDYSGNSKYMSFIQSGANTWNAYKKGVIRPASGANKSDVYCSDISANNNINATTYSNGKITFNKKNMDKKNNAGKQNVATHELGHGLRLGHNASSDVMYQYSTSKTTLSTNDKQSYDAAYKKYLast
1 -77.600IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e]  ali  100  1MKKILSLLVAFVCLWSILLPGQEADAAAKINSWDLVDSSKHLDYSGNSKYMSFIQSGANTWNAYKKGVIRPASGANKSDVYCSDISANNNINATTYSNGKITFNKKNMDKKNNAGKQNVATHELGHGLRLGHNASSDVMYQYSTSKTTLSTNDKQSYDAAYKKY 164
2 -56.000IDP02151 hypothetical protein GBAA3159 [Bacillus anthracis str. `Ames Ancestor`] GBAA3159 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  1MNFKKGITAFLLGTVFVFSSVGVSEAYVKEGKLPSKSATYKWGDDGSSIIKSGWQAADSAWYTASRINFTVSASSVNTLNSWFESSST-NTSTKKVTKFAGDINAGNTNITKSNVAKSTGVHEFGHAIGIGHNSGTSIMNSNRNTMHVPQTDDKNGVNAIY... 175
3 -19.000IDP02828 hypothetical protein GBAA4243 [Bacillus anthracis str. `Ames Ancestor`] GBAA4243 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  18.............................................SDDRVAKDLAVAESIWHPITSFFQTCVNEAPECDLYICYIGSDYFKETAVIACAYSLAKQQQLNSAAPMKNIYTLAHEIGHILFTRRVSPTNLMYPIVPRQSLLTSEQKALSLQ..... 196
4 -14.700IDP00191 conserved hypothetical protein YPO0932 [Yersinia pestis CO92]  ali follow..  11  7..............................................PIALQQAVMQCLRHYLQLANQHL----GTAYPEPKVNYHQRGTNAGSAYLQSFEIRLNPVLLLENKQPFIDEVVPHELAHLL--PHGKEWRWMMEQVLKVPASRTHQFEVASVRSKTF 127
5 -13.200IDP91379 Zn-dependent protease with chaperone function [Vibrio vulnificus CMCP6] VV1_1473 [Vibrio vulnificus CMCP6]  ali follow..  10  89MEGNIPAWILSAMVCLAVIAGCYYYLLPWGSQKIAESLPDSLSIAVGEQVLDSLDLQLQPSQLPEEQQFAQVLPELPYDIKVEFRSMPEGANAFALPGGTIVLLDELVALATQQQLDSIILHEMGHVHH-RHMMKQVVHSTILSVAVSLITGESSGIVDN.... 257
6 -13.000IDP00182 M48 peptidase family protein YPO0398 [Yersinia pestis CO92]  ali follow..  11  90LERHKSGVLLTLLITPLLILAYIYWLLPWASSEIALRIPTTAEQKLGEHSLEWLQQSGEAIQQLFLQVMPPQMRQERTPLKLVLMTAPTTANAFMLPDGTMVISDDLIKLTSDDALAAVMLHEMGHHAH-RHSMQMVVRSSLVALTFMWMTGDVNGIGDT.... 260
7 -12.800IDP00190 putative lipoprotein YPO0927 [Yersinia pestis CO92]  ali follow..  13  1MKIRTSMIALSLAALLSGCQSLNTEGLMQSGA-----QAFQAATLNDADVKALSEKSCVEMDQKAQIALGDNINGTPANYKVYVTKDVN---AWAMANGCIRVYSGLMDMMTDNEVEGVVGHEMGHVA-LGHTRKA............................ 143
8 -11.800IDP00211 hypothetical phage protein YPO2101 [Yersinia pestis CO92]  ali follow..  14  112....................................................................................................ITLAADYCAQCSDLEFCALIEHELYHISHATDEFGAPKFNKEGQPVLKLRGHDIEEFVGVVRRY 175
9 -11.500IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames]  ali follow..  15  314.........................................IHAGVGQEAGGGKLGDDAIWSH-------------RSKLAIDPVAIEGTKSKVDYFGGKVAAHDYTIEPEDGA--VGVFAHEFGHDLGLKYTGTGSLMSGGS..................... 412
10 -11.100IDP00033 immune inhibitor A metalloprotease BA_1295 [Bacillus anthracis str. Ames]  ali follow..  15  309.........................................IHAGVGQEAGGGKLGDDAIWSH-------------RWTVGPKPFPIEGTQAKVPYWGGKMAAFDYTIEPEDGA--VGVFAHEYGHDLGLQYSGHGSIMSGGS..................... 407
11 -11.000IDP91447 ribosomal protein L22 [Vibrio vulnificus CMCP6] VV1_0393 [Vibrio vulnificus CMCP6]  ali follow..  7  18.............................................EDLSTPEHLIALAEDKGETDPVNVSELAKHLGITVRYEPMQDEESGSLKKEKKSGMTVNSLH----HPHRQRFTIAHEIAHRI---HAAAASLLMPKDAFDNFIANSKVEDVAMHFQ.. 160
12 -10.500IDP91565 gene: ECs0850; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34273 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  46............................................GTDHNIYQQIEAALDKIGSTET-AIESISRLKSETVVIHLNSSRLGVMAGTGSDFHCNLNAVEYPCGEGISVVDIVFHELLHVVGLGAFSEEVLSENKFHEEIGMP------RRTSYP.. 207
13 -10.500IDP00224 putative membrane protein YPO3058 [Yersinia pestis CO92]  ali follow..  11  37.....ILIIVLVAGYYGVDLTPLLNGGDPLSQTQTPPRSPKAVSTQDDQYAKFTSVILDTWKPIMGRTYQDPKLVMYRGATQTGCGTGQSVMGPFYADSTIYIDLSFYEDMKNKLQAYVIAHEVGHHVGIDAKVRQQQQGVSQAEGNRLSVKMELQADCFAGVW 215
14 -10.500IDP01447 gene: lolB; outer membrane lipoprotein LolB VC2181 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  7MNALVRRLLPGLASLLLLAGCATAPLQPVNVQWQSHQVT----------------EQIQHYQLTGKLGYIAPDQRQSFNFQWQKSPQGQTVLNLQVDEQGARVETYDDQIYRDQDAQSLIRNLTGLDIGLPTQATHYELNEQNTLATLTKLASTEEWHVEYQRY 175
15 -10.400IDP00206 putative heat shock protein YPO1706 [Yersinia pestis CO92]  ali follow..  11  1MMRIALFLLTNLAVMLVFLMIMAGLFGFGGAFVSLLMSKWMALRSVGGEVIERPRNETEYWLLETVRRQSQQVGIAMPQVAIYQAPDINAFATGARDASLVAVSTGLLQNMSRDEAEAVIAHEISHVA.................................... 145
16 -10.200IDP02335 hypothetical protein GBAA2583 [Bacillus anthracis str. `Ames Ancestor`] GBAA2583 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  280...........................................IANENDLIEKSTHIFNKLDVEFSTLLNRMYKHDCLDLTSRKGKAAGGFCEYLPASQLSYI---FMNLNYTQDDIITFIHEMGHSI---HNELIKPLKLRQYIEIPAETAELANM....... 387
17 -10.100IDP01133 oligoendopeptidase F, putative BA_1353 [Bacillus anthracis str. Ames]  ali follow..  12  285...............................................DWIVNHGKTMYKELSAETDEFFNFMLDNDLLDLVAKKGKAGGGYCTYIENYKAPFI---FSNFNGTSGDIDVLTHEAGHAF---QVYESRKFEIPEYNWPTYEACEIHSM....... 388
18 -9.690IDP01175 peptidase M3 family protein BA_2825 [Bacillus anthracis str. Ames]  ali follow..  16  266...........................................FQNAINLLDGVEEMFRTTDLYFYEKFIHIRKAGCIDVEERENKAAGAICFTLPHSKEVFV---YSNFSPSFYAINALIHEVGHAF---HF............................... 349
19 -9.600IDP00225 putative exported protein YPO3069 [Yersinia pestis CO92]  ali follow..  10  1MIATLLSSLLLTGPISAGAETQGLLPAQDLLPDIGTSAGATLSIDQEMAMGDFYVRQLTQYINTLGNRLVANANSVRTPFHFYLVNNDQIN-AFAFFGGNVVLHSALFRYTNESELASVLAHEISHVTQ-RHTLAGAQQGIISFTQGNEQEADRIGIQVL.... 210
20 -9.340IDP05384 conserved domain protein [Bacillus anthracis str. Ames] BA_1466 [Bacillus anthracis str. Ames]  ali follow..  14  1MKKLLNVFVIIIVMIIASYSLMKVLLHYANKPAGVSTTAEIEDVQEETKVLDFIRMTHESYNNFGKAENYTEGDWNQFKQWFQQQESSLKNIHTDIKNEKIKRDVNRSYEIAKKGVELVYAHRVYHDLDVNKYRGETNIWGYTEFGDGKDIRVIEQA....... 168
21 -9.210IDP01176 peptidase, putative BA_2869 [Bacillus anthracis str. Ames]  ali follow..  16  76...............................................SVAVQNIYGAFKNIDEELAELARNAIESGWVDAEPRENKPPGGFCAPFFSEKESRISMRYDGSIDS---VRILAHELGHAW---HFMSFEQSSSFLDDYLPMSTAESASI....... 181
22 -9.160IDP01172 gene: pepF-1; oligoendopeptidase F BA_1206 [Bacillus anthracis str. Ames]  ali follow..  12  325...............................................EEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYIL----MNWHDNVNNLFTLAHEFGHSV---HSYYTRKTQPHVYGDYSIFVAEVAST....... 427
23 -9.120IDP00800 oligoendopeptidase F, putative SACOL1419 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  317...............................................EDSKNYIFGALSVLGDDYTNMLREAYDQRWIDFAQNKGKDTGAFCASPYFTHSYVF----ISWTGKMAEAFVLAHELGHAG---HFTLAQKHQPYLESEASMYFVEAPST....... 419
24 -9.090IDP06297 oligoendopeptidase F [Streptococcus pneumoniae TIGR4] NP_345460 [Streptococcus pneumoniae TIGR4]  ali follow..  12  316...............................................QEALKKAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFML----LNWQDNLDNLFTLVHETGHSM---HSSYTRETQPYVYGDYSIFLAEIAST....... 418
25 -9.060IDP01752 gene: nprB; neutral protease B [Bacillus anthracis str. `Ames Ancestor`] GBAA5282 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  295............................................FDDKAAVDAHVNAGKVYDYYKKTFNRNSFDDKGAKLISSVHVGENWNNAAWNGVQMMYGDGDGTTFISLSAGLDVIGHELTHAVNLVYKNESGALNESLS--------DIMG........ 403
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.