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Query: IDP06121 gene: gmk; guanylate kinase [Helicobacter pylori J99] NP_223024 [Helicobacter pylori J99], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESLLast
1 -101.000IDP06121 gene: gmk; guanylate kinase [Helicobacter pylori J99] NP_223024 [Helicobacter pylori J99]  ali  100  1MNNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL 206
2 -96.300IDP06283 gene: gmk; guanylate kinase [Streptococcus pneumoniae TIGR4] NP_346174 [Streptococcus pneumoniae TIGR4]  ali follow..  33  1MADRGLLIVFSGPSGVGKGTVRREIFESSENFQYSVSMTTRAQRPGEVDGVDYFFRTREEFEELIRQGQMLEYAEYVGNYYGTPLTYVNETLDKGIDVFLEIEVQGALQVKKKVPDAVFIFLTPPDLDELQDRLVGRGTDSAEVIAQRIEKAKEEIALMREYDYAIVNDQVPLAAERVKCVIEAEHFCVDRVIYQEMLPKSPTTR. 208
3 -95.200IDP01611 gene: gmk; hypothetical protein lmo1827 [Listeria monocytogenes EGD-e] lmo1827 [Listeria monocytogenes EGD-e]  ali follow..  35  1MTERGLLIVLSGPSGVGKGTVREAVFKDPETFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIVETEHLKTERV.............. 193
4 -94.300IDP90623 gene: gmk; guanylate kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1177c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  49  1MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDLYFSISSTTRKPREGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFDIDVQGFKIARKKMADIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKELSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE. 207
5 -93.600IDP02139 gene: gmk; guanylate kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4009 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  39  3.SRRGLLIVLSGPSGVGKGTVRKELFSHEDTFQYSISVTTRKPREGEVDGVDYFFKEREEFEEMIRNEKLLEWAEFVGNYYGTPIDYVEKTLQEGKDVFLEIEVQGAIQVKKAFPEGVFIFLAPPSLSELKNRIVGRGTETEDVIENRLTVAKEEIDMMDAYDYVVENDQVELACERIKAIVVGEHCRRERVA............. 195
6 -92.700IDP90539 gene: gmk; guanylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2708 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  38  23.MGKGTLYIVSAPSGAGKSSLIAALLEQNPTMKVSVSHTTRGMRPGEQDGVHYHFVEKEHFIELIGKGEFLEYAEVFGNYYGTSRVWIENTLNKGIDVFLDIDWQGARQIRSQMPEAKSIFILPPSKEELERRLNTRGQDSDAVIAKRMGEAKSEISHYSEYDYVIINDDFDVALMDFKAIIRAERLKQDKQAYSAMLSALLAE.. 229
7 -76.600IDP92045 guanylate kinase, putative [Toxoplasma gondii ME49] TGME49_042730 [Toxoplasma gondii ME49]  ali follow..  31  102.DTAPRILVVAGPSGVGKGTLVKRIFAKWPQFGFSISHTSRQPRPGETHGKEYFFCSREEFEKLKKEGHFVESAEFSGNCYGTSFAAVDNVRRGERICLLEIDMAGVLQIQSTAQEANFVFIQPPSIEELKARLRGRRTENEEHIAKRLAAAQRELALAKEFDFYLTNDNLEDAWQKLEAQLVQWYGPVFKKAPGEKRSRLSEEE. 312
8 -13.700IDP92081 thymidylate kinase, putative [Toxoplasma gondii ME49] TGME49_106970 [Toxoplasma gondii ME49]  ali follow..  13  6.PKRGCLVVFEGIDRSGKSTQARLAYERLTKEGHAAE-LIRFPDRTTPIGQVLDRFLANASWSSDGQHPQVPPPQLTHLLFAANRARILRALGEGRTVLVDVDATFCRESERGLLAPDAVFFLDVAPQETQKRGGYGDEVYEKATQERVYQVYRQFDNLPYWRRIASSLSIEELHEKLFEQLKSVIEATQPDQLLPL......... 258
9 -12.900IDP02096 gene: prk; phosphoribulokinase 1 [Yersinia pestis CO92] YPO0178 [Yersinia pestis CO92]  ali follow..  13  1MSTKHPVIAVTGSSGAGTTTTSLAFRKIFQQLDIRAAQ---------IEGDSFHRYTRPEMDAAIRKAEYSKHGTGRSRKYLPGTFTPWEPLPEPTDVLF---YEGLHGGVVTEHHDVLVGVVPIVNLEWIQKLVRRGHSREAVMDRSMDDYINYITPQFSRTHINFQ...................................... 206
10 -12.900IDP01471 phosphoribulokinase VC2613 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  1MSAKHPIIAVTGSSGAGTTTTSEAFRKMFNMMSIKPAW---------VEGDSFHRFTRPEMDVEIRKAQYGKVGTGQVRRY-PGTFTPWQSLPENSDVLF---YEGLHGGVVDGDVNVLIGMVPIVNLEWIQKYVRRGHSREAVMDRSMDDYLKFITPQFSRTHINFQ...................................... 206
11 -12.900IDP01891 gene: prkB; putative phosphoribulokinase [Salmonella typhimurium LT2] STM3464 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  1MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAE---------VEGDSFHRYTRPEMDMAIRKAEYGQTGKGQSRKYLPGTFTPWQPLPEPTDVLF---YEGLHGGVVTPQHDVLVGVVPIVNLEWIQKLIRRGHSREAVMDRSMDDYINYITPQFSRTHINFQ...................................... 206
12 -12.700IDP90611 gene: tmk; thymidylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2016 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  2...NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLEKLRALVKEEHPGEELQDITELLLVYAARVQLV---ENVIKPALARGEWVVGDQAYQGGGRLGDFKPDLTLYLDIDPKLGLERARGRGRIEKMDISFFERARERYLELANSDDSVVMIAAQSIEQVTADIRRALQDWLSQVNR............... 211
13 -12.700IDP05129 gene: adk; adenylate kinase [Clostridium difficile 630] CD0091 [Peptoclostridium difficile 630]  ali follow..  19  1MEMDNMRIILLGPPGAGKGTQAVGIVEKYNIPHISTGDIFRKNIKEGTE---------KKAKEYMDQGLLVPDELTVG-LDGFPRDIFLKNAGISLDKVVNIEVDKSILVSRAVGRRIHVEFNPPKVEGV-GELYQRADDNEETVSKRIQVYLDETKPLVDY--IKGDQAIDKVFEDIVAALGSGK.................... 221
14 -12.600IDP01671 gene: cysA; sulfate/thiosulfate transporter subunit [Yersinia pestis CO92] YPO3012 [Yersinia pestis CO92]  ali follow..  13  26..PSGQMVALLGPSGSGKTTLLRIILENQNAGRLSFHGTDVSRLHARDRRVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKQKVGQLLEMV---QLSGGQKQRVALARAL---AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELK----FTSVFVTHDQEEAMEVADRVVVVSQGNIEQ............... 217
15 -12.100IDP01125 ABC transporter, ATP-binding protein BA_5175 [Bacillus anthracis str. Ames]  ali follow..  12  21..QKEKITCIIGESGSGKSTLLRML------------NDLQSPTSGIINGKLISDYPPIQLRRMLGQTPPIFDGTIKDNLMGLRLSEKPFPNDDILRSALKTSLSGGEKQRLAFARIV---LMDPPVYLLDEPTSALDSDTERRVMKQFTTLAREKKKT----VIFITHSQQLPEEIADDIIEISKANG................. 206
16 -11.900IDP01763 gene: ssuB; aliphatic sulfonates transport ATP-binding subunit [Yersinia pestis CO92] YPO3627 [Yersinia pestis CO92]  ali follow..  15  36..TAGQFVAVVGRSGCGKSTLLRLLAGLEAASDGTLLSGNALLSH-----------AKDETRLMFQEARLLPWKKVIDNVLGLRGHWRDEALQVLDTVGLA-ALSGGQKQRVALARAL---IHRPRLLLLDEPLGALDALTRIEMQGLIERLWQQHGFT----VLLVTHDVSEAIALADRVLLIEEGRIGL............... 214
17 -11.800IDP06247 gene: adk; adenylate kinase [Streptococcus pneumoniae TIGR4] NP_344771 [Streptococcus pneumoniae TIGR4]  ali follow..  17  3.......LLIMGLPGAGKGTQAAKIVEQFHVAHISTGDMFRAAMANQTDEVTNGIVKERLSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGVINIEVNPDSLLERLSGRETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPIIAH--IEGNQDINDVFSDIEKVLTNLK.................... 212
18 -11.700IDP00988 gene: yehX; putative ABC-type proline/glycine betaine transport system ATPase component STM2163 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  25..SEGSFSVLIGTSGSGKSTTLKMINRDSGTIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHW----TVAQNIATVPQLQKWSRARINDRIDELMALLYPHQLSGGQQQRVGVARAL---AADPQVLLMDEPFGALDPVTRGALQQEMTRIHQLLGRT----IVLVTHDIDEALRLADHLVLMDGGHVIQ............... 215
19 -11.600IDP05086 deoxynucleoside kinase family protein [Bacillus anthracis str. Ames] BA_0014 [Bacillus anthracis str. Ames]  ali follow..  14  8DIPNDAVITIAGTVGVGKSTMTTALANALGYRTSFEKVDSNP-----ADFTRWSFHLQVYFRIFEYGGGFVQDRSIYEDTGIFAKMHHEKGTMTETDYETYKGLFDAMVMTPYFPHPDLLIYLEGSFDDIVDRIQERGRPMEQQTPKEMHGRYENRLNINEYDILKDGDSIEPIIKKIGHFLKQTR.................... 218
20 -11.600IDP92034 adenylate kinase, putative [Toxoplasma gondii ME49] TGME49_024900 [Toxoplasma gondii ME49]  ali follow..  16  32LAKPEGRYIFIGAPGSGKGTQSVKLKKSHCLCHLSTGDMLRHAVATGTE---------KQAKAKLDAGELVSDEIVLG---GFPRDNLLKQKNQKLDGVLYFDVPDNILVERVSGRRIHVTYHPPKVAGL-EPLHHRKDDNEATLKKRLDVFHKETVPVIEH--MDAAKDSTAVTKEMYDFVGKHHKSF................. 255
21 -11.500IDP00731 ABC transporter, ATP-binding protein SACOL2462 [Staphylococcus aureus subsp. aureus COL]  ali follow..  19  26..DKGESIAIIGPSGSGKSTFQKQI------------CNLFSPTSGELKGKPYNDYDPEELRQRIQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVNMSGGERQRIAIARQL---MYTPDILLLDESTSALDVNNKEKIENIIFKLADQ-----GVAIMWITHSDDQSMRHFQKRITIVDGQISN............... 212
22 -11.500IDP91820 gene: adk; adenylate kinase [Escherichia coli str. K-12 substr. MG1655] b0474 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  20  3.......IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAKSGSELGKQAKDIMDAGKLKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHVKFNPPKVEGK-EELTTRKDDQEETVRKRLVEYHQMTAPLIGY............................................ 181
23 -11.500IDP00480 gene: adk; adenylate kinase YPO3118 [Yersinia pestis CO92]  ali follow..  20  3.......IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAKAGSELGLKAKEIMDAGKLKERITQEDCRDGFLLDGFPRTIPQADAMKEAGIKVDYVLEFDVPDELIVERIVGRRVHVKFNPPKVEDK-EELTIRKDDQEATVRKRLIEYHQQTAPLVSY............................................ 181
24 -11.500IDP04500 gene: adk; adenylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC0986 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19  3.......IILLGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAKAGTELGKQAKAVIDAGQLKERIAQADCEKGFLLDGFPRTIPQADGLKEMGINVDYVIEFDVADDVIVERMAGRRAHVVYNPPKVEGK-EDLVIREDDKEETVRARLNVYHTQTAPLIEY............................................ 181
25 -11.400IDP02381 gene: proV-1; glycine betaine/L-proline ABC transporter, ATP-binding protein [Bacillus anthracis str. `Ames Ancestor`] GBAA2279 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  26..KKGEFFVLIGPSGCGKTTTMKMINRTEGSILIDGKDIQQYNINELRWDIGYVLQQIALFPHM----TIAENIAVVPEMRKWSKEKIKARVDELLQMV---ELSGGQKQRIGVVRAL---AANPKIVLMDEPFSALDPLSREQLQKDIVQLQKKIQKT----IVFVTHDMQEALSLGDRICIMKEGKVVQ............... 217
26 -11.400IDP02039 putative ABC transport ATP-binding subunit [Yersinia pestis CO92] YPO1198 [Yersinia pestis CO92]  ali follow..  11  25..SKGEFTVLIGTSGSGKSTTLKMINRLIEHDEGKIR----------FAGEEIRNYKPEDLRRRMQSIGLFPHWTVERNLLKWPKDRIRQRVVELLELLYPHQLSGGQQQRVGVARAL---AVDPEVLLMDEPFGALDPVTRSALQLEITRIHQLSGRT----IVLVTHDIDEALSLADRIVLMDEGRVIQ............... 216
27 -11.400IDP02287 gene: adk; adenylate kinase [Francisella tularensis subsp. tularensis SCHU S4] FTT1161 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  19  3.......IILLGAPGAGKGTQAKIIEQKYNIAHISTGDMIREKSGSALGQELKKVLDAGELKDRISKNDCNNGFLLDGVPRTIPQAQELDKLGVNIDYIVEVDVADNLLIERITGRRIHTKFNPPKVADK-EPLITRTDDNEDTVKQRLSVYHAQTAKLIDF............................................ 181
28 -11.300IDP01464 ABC transporter, ATP-binding protein VC2520 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  30..PKGKVTAIMGPSGIGKTTLLRLIGG------------QLLPEQGEIDGENIPTLSRRKLYRLFQSGALFTDLNVFDNV-ELDEAMIKTLVLLKLEAVMPSELSGGMARRAALARAI---ALDPELIMYDEPFVGQDPITMGVLVELIRNLNRALG----VTSVVVSHDVPEVMSIADWVYLLADGKVIAQGSPQALRDNPDPRV 238
29 -11.200IDP01607 ABC transporter, ATP-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1608 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  27..PTNKITTILGPSGAGKTTILQLIAGLIKPTLGKICIDNAIIEKNTKETQ-----LRHRMGFLFQSGALFTHLSVYDNI-NLDEKLIRNIVLLKLQAVMPSELSGGMARRVALARSI---AMDPDIMMYDEPFTGQDPASFNKLLELISTLNESLN----MTSIIVSHDIQESLSISDHIIIVGNKKIIASDSPENIKNSKDQQI 236
30 -11.200IDP01758 ABC transporter, ATP-binding protein [Coxiella burnetii RSA 493] CBU_0728 [Coxiella burnetii RSA 493]  ali follow..  13  34..HRGEIVAIIGPSGCGKTTLLRSILM------------LRKPTAGTIFGINILECSRAEALSMFQSSALFSSLRVLENV--LHSEAQTKLALLKIALVYPAELSGGMKKRAALARAM---ALDPELLFLDEPTTGLDAKSARELNELILHLRKTLE----LTFVMVTHDLDTLWQVPDRVFFLGEGKVLAALPMDGLVHHKHPLI 243
31 -11.100IDP01336 gene: potA; putrescine/spermidine ABC transporter ATPase protein VC1428 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  41..NHGEFLTILGPSGCGKTTVLRMIFETADQGQILLDDQDVTQVPAEQRHVNTVFQSYALFPHM----TVFENVAFGLRMQKVPQSEIEPRVMEALRMV---QLSGGQQQRIAIARAV---VNKPKVLLLDESLSALDYKLRKQMQSELKQLQRQLG----ITFIFVTHDQEEALSMSDRIIVMRSGKIEQ............... 228
32 -11.100IDP00730 amino acid ABC transporter, ATP-binding protein SACOL2453 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  26..QSGEFIAFIGTSGSGKTTALRMINR--------------EATEGQIDGKDVRSMNPVELRRNIQQIGLMPHMTIKENLLKWTKEEKDKRAKELIKLVYPAELSGGQQQRIGVVRAL---AAEQDIILMDEPFGALDPITRDTLQDLVKTLQRKLGKT----FIFVTHDMDEAIKLADKICIMSEGKVVQ............... 216
33 -11.100IDP00935 gene: modC; molybdate transporter ATP-binding protein STM0783 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  22..PASGITAIFGVSGAGKTSLINAISGLTRPQKGRIALNGRVLHDAENG------PEKRRIGYVFQDARLFPHYKVRGNLYGMAKSMTGQFDKLVSLLGIE-SLSGGEKQRVAIGRAL---LTAPELLLLDEPLASLDIPRKRELLPYLQRLAREIN----IPMLYVSHSLDEILHLADKVMVLEDGQVKA............... 209
34 -11.100IDP04119 adenylate kinase [Bacillus anthracis str. Sterne] BAS0131 [Bacillus anthracis str. Sterne]  ali follow..  21  3.......LILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETE---------LQAKSFIDKGALVPDEVTIG-LDGFPREEIMKDLGKKIDYVLNINVDSGLLLKRLTGRRIHLEFNAPAKADV-GELYQRSDDNEETVANRLDVNIKQTKPLLDF--INGEQDINKVFADIDVLIGG...................... 214
35 -11.000IDP01341 gene: fbpC; ferric transporter ATP-binding subunit VCA0687 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  30..KKGSLVTLLGPSGCGKTTVLRLVLEKPTSGQIFIDGEDVTERSIQQRDICMVFQSYALFPHM----SLYENVAYGLKMLKLPSEEVRQRVDEALKIV---QISGGQQQRVALARAL---VLKPKVLLFDEPLSNLDANLRRSMRETIRELQQRFD----ITSLYVTHDQAEAFAVSDTVIVMKQGDIMQ............... 217
36 -11.000IDP06058 gene: coaE; dephospho-CoA kinase [Helicobacter pylori J99] NP_223488 [Helicobacter pylori J99]  ali follow..  21  5.....NAIALTGGIGTGKSTTLKILESQGYKILDADKIAHQLLQEHRLE--------AQRFGSDILEKDILNRKKLGAIVFQNANEKACELEKNHQAYFLDIPLFFEVGGKKRYPVSRVVLIYAPRALQIE-RLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSLKDLNKQVERFLKT...................... 194
37 -11.000IDP02339 gene: proV; glycine betaine/L-proline transport ATP-binding protein [Yersinia pestis CO92] YPO2647 [Yersinia pestis CO92]  ali follow..  13  52..EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEVLIDGED---AKISDSALRTVRRNKISMVFQSFALMPHLNVLDNLAGIPLLERNEKALEALRQV---ELSGGMRQRVGLARAMAILLMDEAFSALDPLIRTEMQDELVKLQAKHQRT-----------IVFISHDLDEAMRIGDRIAIMQGGEVVQ............... 245
38 -11.000IDP01902 gene: potG; putrescine transporter ATP-binding subunit [Salmonella typhimurium LT2] STM0878 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  43..YKGEIFALLGASGCGKSTLLRMLFEPPSSGQIMLDGVDLAHVPPYQRPINMMFQSYALFPHM----TVEQNIAFGLKQDKLPKAEITSRVNEMLGLV---QLSGGQRQRVALARSL---AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG----VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ............... 230
39 -10.900IDP00713 spermidine/putrescine ABC transporter, ATP-binding protein SACOL1108 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  28..ESGYFYTLLGPSGCGKTTILKLIFEYPDSGEVIYQNKPIGNLPPNKRKVNTVFQDYALFPHL----NVYDNIAFGLKLKKLSKTEIDQKVTEALKLV---EMSGGQKQRVAIARAI---VNEPEILLLDESLSALDLKLRTEMQYELRELQSRLG----ITFIFVTHDQEEALALSDFLFVLKDGKIQQ............... 215
40 -10.900IDP01490 ABC transporter, ATP-binding protein VCA0602 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  58..EKGEFVCFLGPSGCGKTTLLRAILDLPTSGTIHQNQQAITFLPPEQRDFGIVFQSYALFPNL----TVEENIAIGLRNQGMSVRDALEKVEQWLEMI---QLSGGQQQRVALARAL---ALSPGLLLLDEPLSALDAKVRTHLREEICQLQRKLG----ITTIMVTHDQEEALTMADRIVVMNHGVIEQ............... 245
41 -10.900IDP02079 iron ABC transporter, ATP binding subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0173c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  26..KEGEFLSILGGSGSGKSTLLRIIA--------KLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHLLKTFEIEDLRYKKIDEISGGQAQRVAFARAM---ARGCKLLLLDEPFSNLDQNLKQDLRRELKKMIENQG----ITAIMVTHDIEDAYCMSDQIAFLEKGKILA............... 199
42 -10.900IDP00325 gene: coaE; dephospho-CoA kinase Cj1530 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  3.....NAFFVTASIACGKSTFIEIANS----LGFKSISADKIAHKILDENALELEKIFSPFKNLLKKEKKIDRKILGEIVFNNKEAQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYT---PKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTSYADFRQECVKVIQE...................... 195
43 -10.800IDP06310 gene: coaE; dephospho-CoA kinase [Streptococcus pneumoniae TIGR4] NP_345452 [Streptococcus pneumoniae TIGR4]  ali follow..  14  3.....KIIGITGGIASGKSTVTNFLRQ----QGFQVVDADAVVHQLQKPGGRLFEALVQHFQEIILENGELNRPLLASLIFSNPDELREQLAQTEEIFFMDIPLLFEQDYSDWFAETWLVYV---DRDAQVERLMKRDQLSKDEAESRLAAQWPLEKKKDLASQVLDNNNQNQLLNQVHILLEGGRQDDRD............... 201
44 -10.800IDP90561 gene: cmk; cytidylate kinase [Yersinia pestis CO92] YPO1391 [Yersinia pestis CO92]  ali follow..  19  1MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV-RFVSQNGQLQVILEGEDVSNEIRTETVGNTASQAAAFPRVREALLQRAFREAPGLIAD----GRDMGTIVFPDAPVKIFLDASSQERAHRLQERGFNVNAEIQER-RDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRILALPLKK.......... 230
45 -10.600IDP01389 iron(III) ABC transporter, ATP-binding protein VC0610 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  28..NPGEIVCLLGASGCGKTTLLKAIAGLLPLASGQLSLNCVTLDDGKRW-------EQRNIGMIFQDYALFPHLTVAQNVFGLDAMPAKQKEAKIAEMLALVQLSGGQQQRVAIARAL---AYKPDLLLLDEPFSNIDTQVRHELIIEIRKIFKQQG----VTAIFVTHSREEAFAFADKMAVMNRGVIEQ............... 217
46 -10.600IDP00333 gene: coaE; Dephospho-CoA kinase FTT1487 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  16  1MNFINTYPIITGGIASGKSTATRILKEK---LNLNVVCADTISREITKKPSVIKKI-AEKFGDEIVMNKQINRAMLRAIITESKNKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLKVIVIKADLETRIRRLMERDGKNRQQAVAFINLQISDKEREKIADFVIDNTTNQELESKLITTINE...................... 198
47 -10.600IDP02457 ABC transporter, ATP-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1248 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  29..PFEKISCIIGASGCGKTTLMREILM------------LQPIYSGKILGQEISKLADNPIKRMFQHCALFSSLTNLQNV-KLPIDILTDIAIIKLKMVYPSEISGGMLKRVALARTI---ALDPKVVFLDEPNAGLDPYSARAMDDLILYLKEELK----MSVVMITHDLSTIWHIVDDIIYMDEKRI................. 223
48 -10.500IDP02015 ABC transporter, ATP-binding protein [Coxiella burnetii RSA 493] CBU_0107 [Coxiella burnetii RSA 493]  ali follow..  16  29..SAGEMFGVIGKSGAGKSTLIRCV------------NLLERPDKGSVDGQVLTTLSSKVLRQVFQHFNLLSARTAYQNLLGKNPTEIRKVVLPLLELTYPSQLSGGQKQRVAIARAL---VTNPTVLLCDEMTSALDPETTHSILQLLKNINRELN----LSILLITHEMEVIKTVADRVAVLDQGRIVEE.............. 222
49 -10.500IDP90888 RecName: Full=Cytidylate kinase; Short=CK; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase Q9KQT2 [Vibrio cholerae]  ali follow..  14  1MSSHTPVVTVDGPSGAGKGTLCMLLAKKLGFQLLDSGAIYRV-QFIAEGDLVKVILEGEDVSRELRKEETGMAASKVAALPRVREALLQRAFASGIGLVAD----GRDMGTVVFPAAEAKIFLDASAEERARRRFKQLQLKGLDVK--FDALLSEIQERDDRD--------NRAVAPLRPAEDALVLDSTTLTIDEVVEQALQ... 218
50 -10.500IDP02608 ABC transporter, ATP-binding protein [Coxiella burnetii RSA 493] CBU_0178 [Coxiella burnetii RSA 493]  ali follow..  13  27..KDGETLVLLGSSGSGKTTLMKMINRTSGTIKIEGKDVREYNLSELRRSIGYVFQQIGLFPHM----TIEKNITILLKLLHYPKAKRIQRAAELLEMVYSDELSGGQQQRVGVARAL---AADPKYLLMDEPFGALDAMTRSALQEEMIHLNQKLGKT----IVFVTHDIFEAFRIADRIAVMHKGKLEQ............... 218
51 -10.400IDP01155 Methionine import ATP-binding protein metN 2 BA_0312 [Bacillus anthracis str. Ames]  ali follow..  15  29..EKGEIFGIIGFSGAGKSTLLRLV------------NMLERPTAGTIDDKDITSLSTKELRKIFQSFNLFNSRTVFGNLAKVPKNEIKERVNELLKFVYPEQLSGGQKQRVGIARAL---ATSPDILICDEATSALDPETTTEILNLLKKVNREYN----LTILLITHEMHVVKEICHRVAVMEKGKVIEE.............. 222
52 -10.400IDP00916 gene: metN; DL-methionine transporter ATP-binding subunit STM0247 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  29..PAGQIYGVIGASGAGKSTLIRCV------------NLLERPTEGSVGGQELTTLSESELTKIFQHFNLLSSRTVFGNLDNTPKEEIKRRVTELLDLVYPANLSGGQKQRVAIARAL---ASNPKVLLCDEATSALDPATTRSILELLKDINRRLG----LTILLITHEMDVVKRICDCVAVISNGELIEQ.............. 222
53 -10.400IDP01669 ABC transporter ATP-binding protein [Yersinia pestis CO92] YPO3048 [Yersinia pestis CO92]  ali follow..  14  27..KRGEVVSLLGPSGSGKTTLLRAVAGLEKPSQGHIIIGEKTVYDGEERNLGLVFQSYALWPHK----TVSENVAYPLKLRKISTSEISQRVQAVLEQL---QLSGGQQQRVAIGRAL---VYNPPVILLDEPLSNLDAKLREEARVFLRELIMNLG----LSALMVTHDQNEAMAISDRILLLNNGKIEQ............... 220
54 -10.300IDP01835 gene: coaE; dephospho-CoA kinase [Coxiella burnetii RSA 493] CBU_0152 [Coxiella burnetii RSA 493]  ali follow..  16  2.....LRIGLTGGIGSGKSTVANYFAE----LGAPVIDADQIAHEITKPDQAAFKQIINHFNAVLTKGKFLNRTKLRELIFENPRQWLENLLIKAPYCILAIPLLAEASQSVDFIDRILVVDAPETLQI--QRTKSRDQLSDQQIQLILQSQSPREKRLAIADDVIVNDTIPILRKAVFQLHCK...................... 192
55 -10.300IDP02756 ABC transporter, ATP-binding protein [Coxiella burnetii RSA 493] CBU_2038 [Coxiella burnetii RSA 493]  ali follow..  15  41..SPGEIIGITGTNYSGKTTLLEFILGFHTPTKGEIR----------IDGKNIENYDKMILREKIAARGQIFRGTLLENITMFRPERAKQALELSDHFGLSVGGGCSEILSRGVVQVVSTLISKPKILLSDEANALLDLKTDQLFLKILQSLKKRPSTLALADRLYELDSILKTHSNGRSL......................... 240
56 -10.200IDP00635 gene: modC; molybdenum ABC transporter, ATP-binding protein ModC SACOL2270 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  22..TEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQL--KIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHI----DQLIQTLNIDHLMKQYPMTLSGGEAQRVALARAL---STKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQ----IPIIFVTHSNYEAEQMAHEII........................ 198
57 -10.200IDP00706 ABC transporter, ATP-binding protein SACOL0504 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  29..NRNDIFGVIGYSGAGKSTLVRLV------------NHLEAASNGQVDGHDITNYSDKMMRDIFQHFNLLNSATVFKNLSKKSKTEIKQRVTEMLEFVFPDELSGGQKQRVAIARAL---VTNPKILLCDEATSALDPATTASILTLLKNVNQTFG----ITIMMITHEMRVIKDICNRVAVMEKGKVVET.............. 222
58 -10.200IDP02375 gene: engB; GTPase EngB [Bacillus anthracis str. `Ames Ancestor`] GBAA4701 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  26.......IALAGRSNVGKSSFINKILNRK-----KLVRISSKP--GKTQTLNFFLINEMMHFVDVPGYGYAKVSKTERAAWGKMIETYFTTREQLDAAVLVVDLRDVMMYDFLKHYDIPTIIIATKADKIPK----------GKWQKHLKVVKETLDIESGDEVVLFSSETGLGKEEAWKAIHK...................... 191
59 -10.200IDP01501 maltose/maltodextrin transporter ATP-binding protein VCA0946 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  27..QEGEFVVFVGPSGCGKSTLLRCILEDITSGDLYIGEQRMNDVEPSKRGVGMVFQSYALYPHL----NLYDNMSFGLKLSKADKSEIKKRVDHAAEIL---ALSGGQRQRVAIGRTLVVFLLDEPLSNLDAALRVQMRSEITKLQRKLGCT-----------MIYVTHDQVEAMTMADKIVVLDAGFVSQ............... 214
60 -10.100IDP04530 gene: engA; GTP-binding protein EngA [Salmonella typhimurium LT2] STM2519_1_490 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  205.......LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVV----------NKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDH. 395
61 -10.100IDP00944 gene: artP; arginine transporter ATP-binding subunit STM0891 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  26..PEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLTIAGNHFDFTKTPSDKAIRELRQNVGMVFQQYNLWPHLTVVQNVLGLTKDQALARAEKLLERLYPLHLSGGQQQRVAIARAL---MMEPQVLLFDEPTAALDPEITAQIVSIIHELAET-----NITQVIVTHEVEVARKTASRVIYMENGHIVEHGDAGCFAHPQTEAF 236
62 -10.000IDP00760 maltose ABC transporter, ATP-binding protein, putative SACOL0192 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15  28..TDKEFIVFVGPSGCGKSTTLRMVLESITSGDFYIDGERMNDVEPKNRDIAMVFQNYALYPHM----TVFENMAFGLKLRKVNKKEIEQKVNEAAEIL---ALSGGQRQRVALGRAIVVFLMDEPLSNLDAKLRVQMRTEILKLHKRLNTT-----------TIYVTHDQTEALTMASRIVVLKDGDIMQ............... 215
63 -9.870IDP93923 urea ABC transporter ATPase protein UrtD [Yersinia enterocolitica subsp. palearctica Y11] YP_006005730 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  13  33..RRGEVRCVIGPNGAGKSTFFKLLTGEHTPSEGDIRLNTLAPFQRIRMGMSIKFQIPGIFPELTVEQHLQLSLSHLRPEVSSQAVSVDELLERKLSAEYHQLAGNLSHGKKQWLEIAMAVSLQPTLLMLDEPVAGLSIDETYLTGELIKQMQGD-----GLTLMVVEHDMTFVRQIASQVT........................ 213
64 -9.870IDP02160 GTP-binding protein [Coxiella burnetii RSA 493] CBU_1245 [Coxiella burnetii RSA 493]  ali follow..  178.......IAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVTEQDLRLLNRIVEAGVSLIIA-------------VNKWDGLNIEERDNVRNAIDRRMPFVDFARRYFISALHGTGVGKLFRAIQESYQSIQQELTTGQLTRALEKAV 365
65 -9.860IDP00430 gene: sfuC; iron(III)-transport ATP-binding protein YPO2960 [Yersinia pestis CO92]  ali follow..  12  27..PPGSRTAIVGPSGSGKTTLLRIIAGFETPDAGKVILQGKAMFDGTTY-------HKRGIGFVPQDGALFPHFTVAGNIYGLKGSQRDKERRINELMDM--EISGGQQQRVALARAL---AQRPVLMLLDEPFSALDTALRASTRKAVAELLSEAN----IASILVTHDQTEALSFADQVAVMRAGKLAH............... 216
66 -9.810IDP02511 gene: sufC; ABC transporter, ATP-binding protein [Coxiella burnetii RSA 493] CBU_1359 [Coxiella burnetii RSA 493]  ali follow..  17  25..NAGEVHAIMGPNGSGKSTLASVLAGRED-RYFDEDLFELSPEDRAAKGLFLAFQYPVEIPGVNNLYFLKTAVNSIRKTRGEAPFDAIDLMGLVKEKLALVDMEGFSGGEKKRNEILQMLMLDPRLAILDETDSGLDIDALQTVAKGVNSLRNK................................................... 194
67 -9.800IDP01505 amino acid ABC transporter, ATP-binding protein VCA1037 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  27..NKGEIVVICGPSGSGKSTLIRTVSIDSGEIIVLPELDERTRRSGKIG-QHFNLFPHLTVLENLTLAPIRTLKLSAQEAKERAYHFLQRVKITDQTHKYPIQLSGGQQQRVAIARSL---CMQPEILLFDEPTSALDPETINEVLEVMVDLAQD-----GITMMCVTHEMGFARKVAHRVMFMDEGEILEV.............. 214
68 -9.780IDP01423 gene: ugpC; glycerol-3-phosphate ABC transporter, ATP-binding protein VC1552 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  47..HQGEFIVLVGPSGCGKSSILRSILESITSGEIHLAGRRVDNEKPANRDIAMVFQNYALYPHMSVYDNLAYGLKNR----GVDKQTIAAKIAKVAKTL---KLSGGQRQRVAMGRAIVLFLFDEPLSNLDAALRAHMRLEIKKLQRELGVT-----------SVYVTHDQVEAMTLADRIVVVKQGEIEQ............... 234
69 -9.750IDP02084 gene: adk; adenylate kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0639c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  19  4......LFLIIGAPGSGKTTDASLIAQADATNITHYS-TGDLLRAEVASGSEL-----KTIDSFISKGNLVPLDVV---------NTIVYALKAAPTKTIIIDVEQMMEFDKVLSEQ-GVIEVRVSEEVAKERVLGRNRDNEEVFYNRMKVYTEPLNEILDF--IDGERTIEPIVADMKELIKK...................... 188
70 -9.750IDP04257 gene: engA; GTP-binding protein EngA [Clostridium perfringens ATCC 13124] CPF_2008 [Clostridium perfringens ATCC 13124]  ali follow..  15  179.......IAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSETEDGKFILVDTAGLRRKSKVKEEIERYSVIRTYAAIEKADVAILVIDAEQGITEQDEKIIGYAHEMNKAIMVVVNKWDLIE-----------KDDKTLSNYQKDLQQKLKFMPYAKYLFISALTGQRVHKILSTAKYCYDNYSKRVSTGLLNDVISKAV 368
71 -9.750IDP00127 gene: sufC; cysteine desulfurase ATPase component NT01ST1705 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  25..RPGEVHAIMGPNGSGKSTLSATLAGRED-TFKGKDLLELSPEERAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRAYRGQASLDRFDFQDLMEEKIALLKMPEDLLTRKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAEGVNALRDDKRAF----IIVTHYQRILDYIKPDYVHVLYQGRIVRSGDFTLVKQ...... 235
72 -9.650IDP02572 gene: cmk; hypothetical protein lmo1939 [Listeria monocytogenes EGD-e] lmo1939 [Listeria monocytogenes EGD-e]  ali follow..  14  2..TKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRA----EPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQQQVFATEGGIVMD----GRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGD--LDQLKKEIEERDHLD--------TRTHSPLKKADDAIEVDTTSMSIDQVANKILS... 216
73 -9.560IDP00717 phosphate ABC transporter, ATP-binding protein SACOL1421 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  60..YENQITAIIGPSGCGKSTYIKTLNR--------VELVPSVKTAGKIRDQDIFFQQPNPFPKSIYDNITY--PKIHGIKNKKVLDEIVEKSLRGAAIWDELSLSGGQQQRVCIARCL---AIEPEVILMDEPTSALDPISTLRVEELVQELKEKYT------IIMVTHNMQQAARVSDKTA........................ 249
74 -9.540IDP01164 ABC transporter, ATP-binding protein BA_5600 [Bacillus anthracis str. Ames]  ali follow..  15  28..NKGEIVALLGPNGAGKTTTMSMMLGLKDPTEGTVSIFGKNPKHRDVRNSLGAMLQEVSVIDSITVEEAIE---LFRSYYTNPVAKETLLQLSNLELERKQRCEKLSGGQKRRLNFALALAGNPDLLFLDEPTVGMDITSRRTFWETIRKLVSE-------TIILTTHYLEEADALADRILLFVNGKIIADGTPDEMKATISRKT 223
75 -9.540IDP01198 Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase) BA_1518 [Bacillus anthracis str. Ames]  ali follow..  15  2..DKRISIAIDGPAAAGKSTVAKVVAKKLSYVYIDTGAMYRT-EFQQGENTQLVFLNGQDVSEVIRTPEVTNRVSIVAKHRLVREEMVQQELAEKGGVVMD----GRDIGTHVLPDAEVKIFMLASVEERAERRHLENMNKGFDSN--LEQLKEEIAQRDKLD--------EREVSPLKKADDALELDTTSLSIEEVVQKIMG... 217

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24