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Query: IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKKHRLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYVRIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQLast
1 -117.000IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]  ali  100  1MNKKHRLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYVRIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ 219
2 -21.300IDP93852 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005559 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  10  1....MKAIFAVCAVMMALLLTGCAKP-----VSQDYSAFKQSKPKSILVLLPQNQSPEHGMLSQVTYPLSEAGYY-VLPVAVVEETFKQNGMTNAADISAVSPAKLHKIFGADAALYITIVQYGTSYQI----------------LTSDTRVTANAKLVDLKTGKLLWSGSATASSDENSSGGIIGMLVQAAVSQI....................... 176
3 -18.500IDP90329 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_548 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  1MLKMFWL---NSLVFFSLLLSACG-----TVLSPHYVEKKFSLSEGIYVCPIEGD-SLGDLVSSLSYELEKRGLHTRSQGTSSGYVLKVSLFNETDEN---------------------------GFAYTPQKPDEKPVKHFIVSNEGRLALSAKVQLIKNRTQEILVEKCLRKEAIKSASRILYSQLAETIVQQV....................... 189
4 -17.800IDP92719 hypothetical lipoprotein [Francisella tularensis subsp. tularensis SCHU S4] FTT0991 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  9  1MMKVRYIHTIFLFILSVVLLASCG-----HPRGVLSDGNAGNFDSLVGTKVYIKADNFANFANALKRNLTNYNAIVVNDEKSAD---YIINIQDVKQESQLT-----------------------------------SIVGGASNNTFQLIYTVTYNVVKPDDKTPVITQLAQNNEANRIYSYLEGQLVNNMATQIAALLPSKNTTQASTSSDNSLQ.. 191
5 -17.000IDP93848 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005557 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  1MMKKI---FLATTLITTVLLSGCATESSRSLEVAKVTKFDNRSSYMSGIFSDGVDRLGNQSKTILVTHLQQTGRFNVLERTNMEE------LKNEAAISGKSQQLKGATYVVTGDVTE---------FGRKETGDRQLFGILGRGKSQVAYAKVNLNIVNVNTSEVVFSSQGAGEYELSNNGKVLDLAIREAVNNL....................... 210
6 -16.700IDP06182 hypothetical protein jhp1453 [Helicobacter pylori J99] NP_224171 [Helicobacter pylori J99]  ali follow..  6  1....MRV---LLFFILLLWFKGCG-----KPIATYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQRFQNRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRAT---------------------------------------SVNYTYDNKRGTQKTFQNSNTFQNRYYAINQAVEQTLTKFVAQI....................... 160
7 -14.700IDP05607 putative lipoprotein [Bacillus anthracis str. Ames] BA_4862 [Bacillus anthracis str. Ames]  ali follow..  12  1MDRHMKFSMFMFLGVVLIILAACTT------KSVEQVAVKEVPKEGYIILRNETVF................................................................................................................................................................... 50
8 -14.500IDP04207 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2836 [Clostridium perfringens ATCC 13124]  ali follow..  8  1.MKNKKLILVILCLVLGLGIAGCSAKDISSKFVGSNNN-------------DFEYIKENRVDKIVIQSTRDSGFRFLVKEKSV---IDNIYSMLSKAEVVSKKTDLPPDY---------------EIHVGDEEKKFYYVTGVKNNGEGNFYDGDHFYRISKRLDNYLMQNMQAIRKPRAFDEIYYTSILEVMKKEKDELNKDNAKVGIDILGDRDCTK. 188
9 -14.100IDP05485 putative lipoprotein [Bacillus anthracis str. Ames] BA_3234 [Bacillus anthracis str. Ames]  ali follow..  17  1MNMKGRNVSVVFIAIVIFIIAGCSNMIGNEDQTIKVQKHVDDTYEDLKVVTDNKQV------QQVKKILNDAHFENKKVQMSRPADYHFVFQFKNPKIEAKATLYQ................................................................................................................. 100
10 -13.900IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  18  1MLK--KLGILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAKKEN............................................................................................................................................................................. 44
11 -13.700IDP91374 outermembrane lipoprotein [Vibrio vulnificus CMCP6] VV1_1919 [Vibrio vulnificus CMCP6]  ali follow..  14  1......MKNIGLLLLASLFLAGCTTPTHLPLSGSQAIEVTGNEGHWYSYLFFSNDTMMQGAVNDLKNNAKELDADTI.............................................................................................................................................. 88
12 -13.700IDP05429 hypothetical protein lmo0791 [Listeria monocytogenes EGD-e] lmo0791 [Listeria monocytogenes EGD-e]  ali follow..  9  1MKKGLFS--MVLVLAMVLVLSACGAEPKKAGEITVNAVVYNKDTDKVKDVYGEDGSKFEKEFETSFKESFISTFTASFSSDVNLDKQVDEFYDALRKQVNEKTSYT---------------------------------TKVTNDDKESPEIQFAIKGLDMKGVEELTKAATADPSIASDDQKMAEKTMEIYTKAVQNADAVSEAKTVTL......... 183
13 -13.500IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  14  1MKVYVKIALLCLTFTCIFALAACKGTDEKKETNPTSENSKNEQNTSSEGKKEPEV.................................................................................................................................................................... 55
14 -13.500IDP05445 hypothetical protein lmo0821 [Listeria monocytogenes EGD-e] lmo0821 [Listeria monocytogenes EGD-e]  ali follow..  10  1....MKKIIFTVVLSLVLVLAGC---ADVTNTVKVDKKGEATISFDIDISSVAGIFASSY-SDEVEAKLKEAGFTVDKKSNT......................................................................................................................................... 74
15 -13.300IDP02402 hypothetical protein FTT1778c [Francisella tularensis subsp. tularensis SCHU S4] FTT1778c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  9  1MKLR-KVLIATLLGASALSLSSCWLLVGAAVGGGTAAYISGEYSMNM-------SGSVKDIYNATLKAVQSNDDFVITKKSITSVDAVVDGSIKVDSTS------------------------------------------------------FYVKIEKLTDNASKVTIKFGTFGDQAMSATLMDQIQKNL........................... 130
16 -13.200IDP05010 putative lipoprotein [Bacillus anthracis str. Ames] BA_4934 [Bacillus anthracis str. Ames]  ali follow..  8  1MKKVLML--FVLLLTASILLIGCST-------KKEKAGMNLEKAQKVEIESLTDSITDKKEIEKLFEVMKMDKWEMQSAPLDTPQGKTFKMYQEDTTK......................................................................................................................... 94
17 -13.100IDP05267 hypothetical protein lmo0255 [Listeria monocytogenes EGD-e] lmo0255 [Listeria monocytogenes EGD-e]  ali follow..  10  1MK---KFLSILSILVLALLVTACGSDSSDKKSAKKE-----EKMETVTYIADINGAKLEATFSHVGDNLRKVDQKMVYPLTALGLESGANLDDATKKQLEEQVASQYSAYKESK-----------------------GASLETKFTDEALELTMSVDLYKADKDSVASLLGGTTDPKNVSLKETVKQFEAQGFKKKE...................... 166
18 -12.700IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]  ali follow..  10  1MKMLKKGTAVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSK----LTYTYKGDKVTKQTAENTM--SYASLGVASKEDAEKM........................................................................................................................................ 77
19 -12.700IDP92665 lipoprotein [Bordetella bronchiseptica RB50] NP_887361 [Bordetella bronchiseptica RB50]  ali follow..  10  1....MTLRFHATLLGCAILLAGCASPTSERAGEPASDQAE-------DLQQIRQSYSAGAYGDVIRQVAHADALAQAPQSMRIEAWKLQAFSYCVTDHRVLCEAGFR................................................................................................................ 97
20 -12.600IDP05670 hypothetical protein lmo0617 [Listeria monocytogenes EGD-e] lmo0617 [Listeria monocytogenes EGD-e]  ali follow..  10  1MKKLKSILLLMGIITFALALTACGGTEDKASTEKIETAKAETKKKSNPNELGDYKVEILSSE-AIKTKFTNNSKENIS............................................................................................................................................. 88
21 -12.500IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  15  1MKKLLVP--VLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDSNNASHKDNKDNNVSNNKNTNKKLD..................................................................................................................................... 84
22 -12.300IDP05442 putative lipoprotein [Bacillus anthracis str. Ames] BA_0171 [Bacillus anthracis str. Ames]  ali follow..  10  1MSKKL-LSLFSAVIVAAFVITGCGQSDTTNKEQKENAAKENKTEKTDTTKENKPEEKNPKTRKLKIKR....................................................................................................................................................... 67
23 -12.000IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630]  ali follow..  9  1.MKNKKIMLVLSILSISIFAVGCTNAQNGSDSSKKETKSNTNVEQPKEENNTEKEVPNNKAKPTPKEETKAQSATIYSFDVDKTDLIENKVDLNKIDENTLFEELQKLKVVPESAKLNSF-----------------------TTKDIDGVKTGILDV-----SSDFTKSNLGSDAETLMLDSVARTYVEQIKITVDGSNYESGHIVLEEGDYLK.... 191
24 -11.900IDP05476 putative lipoprotein [Bacillus anthracis str. Ames] BA_2745 [Bacillus anthracis str. Ames]  ali follow..  11  1MKKST---LILCSLCLGFSMTACEQKKEVKKQTATSSTVMENQKKESININHFSNINEGMTYKEVKDLIGFEGDLLIEEGVE......................................................................................................................................... 79
25 -11.900IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]  ali follow..  7  1MMTGFK-KVILPVLLVVLFLAGCNQELTVNGTLTWNGEKNDYASEVMITVSSNTAVTNATTGKAMKLADIKEEVFPQGSNITSPAPGKVSENATSLKVTPK...................................................................................................................... 127
26 -11.800IDP05448 hypothetical protein lmo2594 [Listeria monocytogenes EGD-e] lmo2594 [Listeria monocytogenes EGD-e]  ali follow..  13  1....MKKTSIIFIFCTLLFVTACSTSENQTQATEATGTIEQVETDAILINNFKEKITDLNKNDDVKIILTKDFPIQETSPAQIDPKYVQKI................................................................................................................................ 114
27 -11.500IDP04565 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1805 [Clostridium perfringens ATCC 13124]  ali follow..  13  1MIKKIVV--AVGLAFSLSFLVGCGNKSLVE----------------------KAAIKQGNYEEATAI------FKAASEEDSKDKEEAESLYDLTYNYVISNKAYNEFKL............................................................................................................. 82
28 -11.400IDP04317 putative lipoprotein [Yersinia pestis CO92] YPO0512 [Yersinia pestis CO92]  ali follow..  10  1.MRSLFRVLPIFILTGCVLLSGCSWFSSSSEAALQKRRIDLQVVAAPLINPGPNGQAQPLKVCII--ELNKEGWSPPGLYQ.......................................................................................................................................... 78
29 -11.400IDP93894 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005558 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  16  1....MKLTQKISLLLAASVLAGCATA--------PKPIYHWDNYQSTVYEYYKSDASPEQQIAALKESIEK.................................................................................................................................................... 59
30 -11.400IDP05148 putative lipoprotein [Bacillus anthracis str. Ames] BA_0177 [Bacillus anthracis str. Ames]  ali follow..  5  1MK---KIIFVSSLVLAISLGVGCSNEKTAKTDEPKKES-----------VQKEKELTAKDVFKKTNEAFKNEEHVTMTYGVGVKAE..................................................................................................................................... 72
31 -11.300IDP90372 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_253 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  9  1MRKFWLLASFGLLSLTTTTLSSCAVSNSGSYNARLYTKGSKAKGVVAMLPVFYRT-LQAEFSEEISRRLHSSDKLLLIKHHASAGVAAQFFSPTPNISPELATQLLPAEF---------------------VAAEILEQKTTEDVLNPSISASVRVRVFDIRHNKMIYQEILDAS-DSTPMGLMHQRLFREIVARVE...................... 207
32 -11.000IDP05121 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0915 [Bacillus anthracis str. Ames]  ali follow..  8  1MLKKFTT--CILGGALVFNLSGCGNTSDKTSSESKETNSKQEEKNVQTTDEAKTKENTKQKNTAVNKDFHTPKFDVTFQKPEDGHVFIVVEAEGKNITSEPMKLAFLPSVDLVDENDNAYQSDVWAASSYDVEKGETSSITKELKPGEVKRQNKVYVINKEKFDTGKWYVVVNNEYK.......................................... 205
33 -11.000IDP02585 lipoprotein [Francisella tularensis subsp. tularensis SCHU S4] FTT1416c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  8  1MKGLKAKIYIIFLAAVLAVISGCATDKGTQKDGYYITTLNYNFNTVY-------NATLQAIQNGQTFDYKSNPYDISVNKNNGTDAEIVSASDSDSTDS------------------------------------------------------LQVAMKKLPNNATRISIKYGSQGNSIRSSALIGIIEGNIRYA........................ 135
34 -10.700IDP05763 hypothetical protein lmo2331 [Listeria monocytogenes EGD-e] lmo2331 [Listeria monocytogenes EGD-e]  ali follow..  11  1.MKKGIALLAGFMLAFSIFLTGCGGTDNTRKENHSDGSAEVKNKKDNNTSDEYVE.................................................................................................................................................................... 54
35 -10.700IDP95127 pullulanase-specific type II secretion system outer membrane lipoprotein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917879 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  13  1MRIPLI-----FPLCMVALLSGCQQKPASTLSPAISSQAQLEQLSSVAAGTNRSDLADETIYRAAVNVGKARGWGNIDVAT.......................................................................................................................................... 84
36 -10.700IDP06193 gene: lpp20; lipoprotein [Helicobacter pylori J99] NP_224067 [Helicobacter pylori J99]  ali follow..  21  1.MKNQVKKILGMSVVAAMVIVGCSHAPKSGISK.......................................................................................................................................................................................... 32
37 -10.600IDP05647 hypothetical protein CD3457 [Clostridium difficile 630] CD3457 [Peptoclostridium difficile 630]  ali follow..  9  9VKFNIKGIIYGVIALVFVIGGFIFIP---SMFVEKSKPIDYTVLQRNSIPEKILDVDNKIYIIVTRGNNKYGIEM-DKIESVVEEGKDVLRVKIKYKDKEDSFPY.................................................................................................................. 124
38 -10.600IDP06088 hypothetical protein jhp0340 [Helicobacter pylori J99] NP_223059 [Helicobacter pylori J99]  ali follow..  12  1......MKNLSTLLVFLFFCLGCVSNFNEDTDLVLEKKIQASRKGEITQDNVPIITAIATHLNDVDSGTYYDHLVEIFTQNNDWIDDGYISYELFGTKPTGSEPL.................................................................................................................. 105
39 -10.500IDP04518 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2883 [Clostridium perfringens ATCC 13124]  ali follow..  10  1MVKKI---MASLIIGSLFLFMGCNRIKESVESIYFNNKIAISIAEEYMEALKSNDLEKIK--RLSDKEVDKNGIKQVGSAQLGNKTMFKFYVTRTKEGE-----------------------------------PKADLEQYYLEVRKTEEGEYKVSELKSTELYSVFLDKDKLKIRKDDDVEINTLIDLKSIPDKIYPKVNVIDVKVDVPKE...... 196
40 -10.500IDP04392 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1500 [Clostridium perfringens ATCC 13124]  ali follow..  16  1MR---VLKGVILAIIPAFLFMGCGEFSKNDVAKVSFEKLSEKEEQILNLTDNRVFFYKVKNISDLNYEVYKEG.................................................................................................................................................. 77
41 -10.500IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  4  1....MK-KLIMTLFIAMLALAGCNTNKEEPKKEQKLEAVKVAVQTQALVTQGKEKVTDADDVKAVEKTFETDGYHIIAHTNAREMHVMPEVKVAVGNAKVEDAKKENSDHGAGHGDHKSDTMIHLMAGDIKANAESTMKVHLKQKEEALTGAEVQLEIWKDGVEKHEFIPAKEGNKGEYETKHTFKE-VKVHVKKGELHEHKEETVEVK.......... 246
42 -10.500IDP05486 putative lipoprotein [Bacillus anthracis str. Ames] BA_4573 [Bacillus anthracis str. Ames]  ali follow..  11  1MRAFFRG--IGPFLIVVLLLVGCQSE-----ENKIEQKATTTKAEEKVQITKEEEKSIQDVMDKFVRTTNEKNLAEHIE............................................................................................................................................ 72
43 -10.500IDP05589 putative lipoprotein [Bacillus anthracis str. Ames] BA_2931 [Bacillus anthracis str. Ames]  ali follow..  12  1....MKKALFSVLLFGLVFLSACV------SFQNEYEDYWVIEKSRY----NKIGFGPSNLYEKAQEDPTMVHYSNNSISEGK------RMIYLTFGTKYK---------------------------------------NDK----------ITVKEVKDEKDKSVIVLHIEKSKGKDENPVMY---VPKLRDFIKIVDEDGNKIFEMKKNESVTSQQ 149
44 -10.400IDP05242 hypothetical protein lmo2079 [Listeria monocytogenes EGD-e] lmo2079 [Listeria monocytogenes EGD-e]  ali follow..  12  1MK---KGILLSILLALVLVISACGESAEEKAAKTPQGKFVQTMKNTTSFAVNDINVSSTDPSAQTMGILKDIKLS-VTTSTDKKANKSEAKFNVTSTNNLLPISMDLD............................................................................................................... 114
45 -10.300IDP05592 putative lipoprotein [Bacillus anthracis str. Ames] BA_3194 [Bacillus anthracis str. Ames]  ali follow..  6  1MK---ILKFGIIGALSITLLIGCTSNSNETKASNKERKLEISPVNSKSSNQVVNTENIKTIFTSMESAEKKTLLLDQEAKNYIHSKMKVTY................................................................................................................................ 110
46 -10.100IDP05001 putative lipoprotein [Bacillus anthracis str. Ames] BA_1090 [Bacillus anthracis str. Ames]  ali follow..  11  1MK---RVMYVVLLLSFVIGMTACNDETSSSRTLLSIGKPAKDNVIYFTHTDNKRKI------QEIQDMFQNKKWKRNETFSTVNKTPDVVFSIDEDNTGLPALYVT---------------------------------------------------VYFHEDGADVLNLYGEYTSFNKQELAMLREKMSAYYPKM....................... 136
47 -10.000IDP05451 putative lipoprotein [Bacillus anthracis str. Ames] BA_0580 [Bacillus anthracis str. Ames]  ali follow..  4  1......MKKIGTMLLFSILIAGCTQAQPDLKKPKKEAIATSSTQVNAPSFFHLSVLKDVNWEETLKGIEEKIAMADSPIIANEKNEIMWYFLDPEMPTGKLSIIALKQGSVTPTPLLFQ----------QESSEPTWTTSNTIDSTTNELPLTMSLP------SSGLWVLNIYVNE------KYYDQFVITA........................... 173
48 -10.000IDP05460 putative lipoprotein [Bacillus anthracis str. Ames] BA_0985 [Bacillus anthracis str. Ames]  ali follow..  9  1MK---KIISICALTALSFTLIGCASAFQLNSANITDIEILQTTNNTTSKSQTDNKEMIQSIVSAVQKGTPKTITLDQKKRK.......................................................................................................................................... 95
49 -9.860IDP01904 gene: smpA; hypothetical protein STM2685 [Salmonella typhimurium LT2] STM2685 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  9  1MRCKTL---TAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPTDVAKVRVGMTQQQVAYALGTMTDPFGTNTWFYVFRQQPGHENVTQQTLTLTFNSSGVLTNID................................................................................................................. 105
50 -9.830IDP01905 gene: scsA; suppression of copper sensitivity protein A [Salmonella typhimurium LT2] STM1113 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  1MAKQQRMGWWFLCLACVVVMV-CTAQRMAGLHALQMQATASAAVVSAPSSTDDGSPVTP--------ELSAKSLLAAPPVLFEGAILALCLLLS............................................................................................................................. 86
51 -9.820IDP91970 lipoprotein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005433 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  18  1MKIKKWLGLVALATVAGLALAACGNSEKKA-----------DNATTIKIATVNRSGSEEKRWDKIQELVKKDGIT................................................................................................................................................ 64
52 -9.810IDP05718 putative lipoprotein [Bacillus anthracis str. Ames] BA_1601 [Bacillus anthracis str. Ames]  ali follow..  9  1MTKTKWLVGGVVTSLMTGTLFGCAQDLPPKPNDKSCSDWDWDDELGVWQCDESSSSYRGHYKSTFKNSSAFKSYQSSAEFKG......................................................................................................................................... 91
53 -9.790IDP06519 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN09962 [Enterococcus faecium DO]  ali follow..  9  1MKKRYKLVIALLNITLLFSLSACGKTNEEVTANIADPMIKKATTLEVYVANGKLTNYVENAAKIYNRKTGAN-LKIVNVASGTATVQMITPKLVTHEDMPDIISMADTSAAGVLEKFQDAFYSADEYGFYDKYGDQFYDQKLNILRQQTSNETIIPWASDFTPALCYYQPKKAEIGVDFEEISSWEEYIQVAKA......................... 196
54 -9.560IDP93825 secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007735 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  8  1MLFAIRK---ISWFLPLVLLTGCQQPLNKPVQPTAQQQIKVAGAHYLQKDCQIKDVDEAVLVKTALKLATARHWDTRAPAYKL........................................................................................................................................ 86
55 -9.530IDP05466 putative lipoprotein [Bacillus anthracis str. Ames] BA_1948 [Bacillus anthracis str. Ames]  ali follow..  10  1....MKIKSILLACIVSIGLMGCSLVEEGKNSLDYAQKATDYVNEISAFANDAPALAEKAVNDEARKQLETK................................................................................................................................................... 69
56 -9.490IDP02672 hypothetical protein FTT1602 [Francisella tularensis subsp. tularensis SCHU S4] FTT1602 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  1MKKQLFA---ISITTALLVLSACGQTGPLYLPDEDKLNSGSTLAKSGSSIMVKQNQQNNSTSTSDNQSDTSTKVDNDPTAPVRNNN..................................................................................................................................... 83
57 -9.470IDP05050 iron compound ABC transporter, iron compound-binding protein [Bacillus anthracis str. Ames] BA_5330 [Bacillus anthracis str. Ames]  ali follow..  10  1....MLLKLVSILAIFTLMLVACSDSGKETSKATKDNSSDKPKTVEITDAHGKVKVPVN-LDNRTFETLADWGIKLAAAPKD......................................................................................................................................... 83
58 -9.340IDP05507 putative lipoprotein [Bacillus anthracis str. Ames] BA_5374 [Bacillus anthracis str. Ames]  ali follow..  5  1MRKLGLI--TALFALLFSSFTGCDN--SPLDKKVKEEAKRTEKEKGPKLTKMSTESFNQSISQGAKKRALADGIIKSAAVNSNLDLYIAVIPEHHERFGLKPLR................................................................................................................... 101
59 -9.340IDP05398 putative phosphonate ABC transporter, phosphonate-binding protein [Bacillus anthracis str. Ames] BA_3750 [Bacillus anthracis str. Ames]  ali follow..  12  1MLKKF-FAMSTTVVLAAGLLSGCGTKESSANKNADTKKGYVPKTLNVQFVPSQNADTLEAKAKPLEKLLSDKTIVEAMASKQVDVGFLPPTAYVLAHEKKAANVILQAQRFGVDDETGAPKKDLVDFY---------------KSEFVVKKDSNINSVKDLKGKKIGYQDVTSSAG........................................... 174
60 -9.280IDP04567 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2099 [Clostridium perfringens ATCC 13124]  ali follow..  8  1.MRKAAALSLLVLVILSTTLAGCNFGKGSNEEDSKGTNLKLPCSIVSTISGEDVLYYEIEGDSLKKLDLDLKGHMEVYSEELG------LAVYREFADKGTNLIITNGVKEHKISVDGNIE------------ELIISPKGTKLLYRYNSGDKIGYKVLDLQNFKEF.................................................... 148
61 -9.240IDP05009 putative lipoprotein [Bacillus anthracis str. Ames] BA_4237 [Bacillus anthracis str. Ames]  ali follow..  9  1MK---AWKSIFVLCSFLLMLSGCFHQEEKKVEPKKKESIPETKEY----GGRELKKVGQKVKETGWGTFKLEQIHSVNQTFEVA....................................................................................................................................... 77
62 -9.240IDP04234 iron compound ABC transporter, iron compound-binding protein [Clostridium perfringens ATCC 13124] CPF_0807 [Clostridium perfringens ATCC 13124]  ali follow..  12  1MKGLKKLAILGIATLTVGMFVGCSSSKTSEEGNTSNEKRIVQVKGEVEIPANPKKIV---DISGSSEELVLLGHTPVATAAETLKDTKIVGHSMMDTADIEGILSVEPDL----------------------------IIMSPRQEKIYDQLAEIAPTVIINDNANDWEAKFKEVAKLFDQEEEAQNWLDNYYKKAK...................... 181
63 -9.180IDP05508 putative lipoprotein [Bacillus anthracis str. Ames] BA_5398 [Bacillus anthracis str. Ames]  ali follow..  14  1....MTIKRTSFIWIFLFSLVACSPPNTTDVVVKGTGISNLDKFEQFVLNVEQVKVDKIRIVDPIFQTLERSK.................................................................................................................................................. 81
64 -9.130IDP01315 hypothetical protein VC0942 VC0942 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  9....IMNHIGLFALTAAALLAGCSSNTQQDNYREASFELCNTEVNIYSVSDDKTEKTLDIMRDINVDYCDGEGLGKFTESNK......................................................................................................................................... 101
65 -9.050IDP06507 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN11122 [Enterococcus faecium DO]  ali follow..  9  1MKKNSRIVMMGVALVSGLVLAGCGNGSASN--------------------SDKVELSINYYNGAISKKAMDN-AKKEFSDYKLSFKQIPANDDFDTKLKASLNSKSAPDITAINSNIS----------------DYLPYADKFVNLLDYDSETLAADFVEWKWDSCFTNDKKTQIAMPIDIGPTALFYNVDAFAKAGLPTNDQ................ 166
66 -9.040IDP91972 iron-compound ABC transporter, iron-compound-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100003825 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  18  1MKTSLKLYFTALVASFLLLLGACSTN-----SSTSQTETSSSAPTEVTIKSSLDEVKLSKVPEKIVDTIRALGFAKN.............................................................................................................................................. 79
67 -9.010IDP05227 hypothetical protein lmo0541 [Listeria monocytogenes EGD-e] lmo0541 [Listeria monocytogenes EGD-e]  ali follow..  18  1MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATK-TTDRKVEVPTTPKRI----VALQNVSEMEILGVKPVGTTD.......................................................................................................................................... 80
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.