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Query: IDP06223 hypothetical protein HP0439 [Helicobacter pylori 26695] NP_207237 [Helicobacter pylori 26695], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKRSEVLEQFHGGLKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALVQKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFLASLast
1 -112.000IDP06223 hypothetical protein HP0439 [Helicobacter pylori 26695] NP_207237 [Helicobacter pylori 26695]  ali  100  1MSKRSEVLEQFHGGLKNLELQTKRRMGLWGDPKENEEQTLFLEEIENELKQLENKENLKADNNTEFKEENQDTKENQPNDLFSLPLPTQTTINGIKEFVEEPVIETEKKETSQNEPIQEKKERIFKNFFSRIGFDKSIAPTMLFEEVRDASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALVQKADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEINFDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFLAS 366
2 -8.780IDP92020 cyclophilin, putative [Toxoplasma gondii ME49] TGME49_120640 [Toxoplasma gondii ME49]  ali follow..  17  1MSSS----ENGHGELASSRKHKERR-------RRNEEE----RKKEREETQREEREREREREDRNSVRDRRREAEDSSSDSDRETKPRERRPAELTDSDDDRRPAAGHGVSADGEKDTSRGGEEEKRKEQREDERRKPG................................................................................................................................................................................................................................... 125
3 -8.210IDP93904 gene: yscP; putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001004080 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  19  1MNK----------------ITTRS-------PLEPEYQPL-LQDFEQALLHNKDNRHPKEEPRRPVRPHDLGKKEGQKGDGLRAHAPLAATFQPGREVGLKPQHNHQNNHDFNLSPLAEGATNRKHLYQQDSRFDDRVES.................................................................................................................................................................................................................................. 125
4 -8.000IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  12  2INRDNK-LNKF--SIRKYTVGTAS---LVG-------TTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDK................................................................................................................................................................................................................................. 142
5 -7.640IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  12  2INRDNK-LNKF--SIRKYTVGTAS---LVG-------TTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDK................................................................................................................................................................................................................................. 142
6 -7.340IDP91675 CREB3_HUMAN [Homo sapiens]  ali follow..  16  167LTKTEEILKRVRRKIRNRSAQESRR-------KKKV----YVGGLESRVLKYTAQNMELQNKVQLLEEQNL--------SLLDQLRKLQAMVIEISNKTSSS........................................................................................................................................................................................................................................................................ 251
7 -7.020IDP91673 CD44_HUMAN [Homo sapiens]  ali follow..  18  678.QKKKLVINSGNGAVED-----RKPSGLNGEASKSQEMVHLVESSEDQFMTADETRNLQN.................................................................................................................................................................................................................................................................................................................. 735
8 -6.990IDP05489 gene: cwlD; germination-specific N-acetylmuramoyl-L-alanine amidase [Clostridium difficile 630] CD0106 [Peptoclostridium difficile 630]  ali follow..  14  54VTNKTIILDAGHGG-KDINLAITLKLR----IESSGGLVILTREDDSSLYKEENNKTTRQKYNENLKNRKEIISNSNANMFVSIHLN-QSKYYGAQTFYPKDKQDSKELSKCIQEELKRVVDKTNNREVKPRDD........................................................................................................................................................................................................................................ 200
9 -6.670IDP91038 hypothetical protein SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3] SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  12  1MRDKKGPVNKF---LSN---LNKRKFTV-GTAS----SLMYLG-TQQEAEAAENNIENPTTLKDNVQSKEVKIEEVTNKDTAPQGVEAKSEVTSNKDTIEHEASVKAEDISKKEDTPKEVANVAEVQPKSSVTHNAEAPKVRKARSVD.......................................................................................................................................................................................................................... 147
10 -6.370CPX_91754_91753 Complex of TVB1_HUMAN with TSST_STAAU [Undefined organism]  ali follow..  36  289.....EILTQIHG----LYRSSDKTGGYWGDLKKFEYNT---EKINDEIKTIEAEIN..................................................................................................................................................................................................................................................................................................................... 351

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 3 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.