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Query: IDP06237 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] NP_345649 [Streptococcus pneumoniae TIGR4], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst METYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSNKEKDLVGKVFGGLTLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVNEIYLNGSPLEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDGVGWTEEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIVMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDDYNYGLHLast
1 -113.000IDP06237 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] NP_345649 [Streptococcus pneumoniae TIGR4]  ali  100  1METYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSNKEKDLVGKVFGGLTLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVNEIYLNGSPLEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDGVGWTEEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIVMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDDYNYGLH 320
2 -104.000IDP90989 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] y1222 [Yersinia pestis KIM10+]  ali follow..  51  7.ITRISAINWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWATLTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKKADIISQHYHNDDPLKKKIASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYDNEVRYTEDLYDHVGWTEDVKKFLHYNANKALMNLGYEALFPASQAAVSPALAALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWDF... 323
3 -100.000IDP02619 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. `Ames Ancestor`] GBAA1372 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  45  1....MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEIN--PIVLNGLRTDTKNHDFFSVKGNGYVKATNVEKSDDDFVFNF. 322
4 -85.700IDP95259 ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] YP_001083788 [Acinetobacter baumannii ATCC 17978]  ali follow..  16  35INCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSETEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYCIESLGMDEG--EVFNMYREIPSVARKAAWGLKYTQSRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGMNASMMEEYLKFICNRRLSQLGLPEQFA-GVTNPFAWM-SEMMDLRKEKNFFETRVTDYQTGGALS........... 360
5 -10.800IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124]  ali follow..  12  13.............................................NLKCNDLRMAKFLISQYGGPDGLSAALRYLNQRYTMPTNKAKGLLTDIGTEEMAHVEMIATMIYQLMENASLEDLKKAGLAERYTDHGKALFTYIQAKGDVVADLHEDMAAEARATYQWLINLTD-------QDIKEILRFLREREIVHFQRFGEALMDVQDKMKC............................................................................................................. 186
6 -5.770IDP01174 hypothetical protein BA_2823 BA_2823 [Bacillus anthracis str. Ames]  ali follow..  1.........MNNILNQIKKEVNMDLLNGLWKRAAFALYDDEHVYPLFLKDNDEYRVLKWEEQFKGDTCILFKDYPTAIVNMNRYKDYASLLAIVVHELFHGFQYPIIEENIQLRNKERICLYDAVHCKSQAEKNNYIKQFIEGEAFITYEYMVESIEGPAWYVEMNAYNTVCKSDESDTLRKYSGLILDVYDANCNMRKSCYSSLLDEILPEWKISFFNSLYAFLKQNINVDLSLNNEITISKETKQILHFVQNERDKEI............................................................ 292
7 -4.960IDP02083 gene: ispB; octaprenyl-diphosphate synthase [Francisella tularensis subsp. tularensis SCHU S4] FTT1044c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14...................................DIQNNNQFIVDSLCSDVVLINQISHYIINSGGKRLRPLLVMLFARALNYNGDKHLACAAIIEFIHTATL---------------LHDDVVDDSQLRRGKQTANNVFGNA-------ASVLTGDFLYSRAFQMMVSLDNMQIMQILADATNKISEGEVLQLLNARNSIKVIYCKTAKLFEAACEGVISLDKQDYTKYQGRIKNYGVYLGNAFQIADDVLDYVSDA--ESLG....................................................... 228
8 -4.830IDP06019 phospholipase A2 activating protein, putative [Toxoplasma gondii ME49] EEB01121 [Toxoplasma gondii ME49]  ali follow..  11  639................................MEFDAQFPEDSPAHLTALEKQYLLDALEKIQSPSFMKKE---------FRACELDVIFEKLAVWPSSKAVPVMDVWRALALHPQYHAVHRKSGDHGWMTVVVALRH-ASQADETPLILCCLRFLANLMDLTTNRTVMLRHANVVLESLASDRVLTNPNKNVRLTAASLLANAFATKEETEGRIKVLKLLRGLMEREGDADVFYRCLLAVLTILATPPQPQQRRLLRGACQEIDMADVLPPLNQN............................................ 880
9 -4.610IDP91543 cAMP-specific 3`,5`-cyclic phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_057080 [Toxoplasma gondii ME49]  ali follow..  12 1281......................KAAIGVAWDLDFFELNE--------RVNNNALLVTGQVQLLPLLRPEGLRCSPQVVRCYLRCLQQQYCPSNPYHNQLHAAMVSHCCLIIVNEVLPKQALTYVDELCLIIASV-LNNQYLISSQSLLATTYNAVLENYHAACCFRTAGINEDHNIFSGLAKIIGLISTDMSKHISYVSRLRVRAESGNFDVNNEGDRWLLFQGCIKAADLAHTATFWDNHKRWAECLCEEFFKQGDEERRQGMNVMDIFDRRQKDRFP---------QSQYRFIE........................ 1557
10 -4.440IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  33.................LIRLLFLTDRYLWCDEASSVLISRHSVDNLLFHAAFLLLHAVRSLSLLFGILTVVLVIALTRWLANERTALLAGWFAALMSQETRMYALMG--------------------LTLAAALALMMWIKTPTHNRYLVAYALLMTFSFYTHYFTLFTLIAHWIA............................................................................................................................................... 198

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Alonso A, Rahmouni S, Williams S, van Stipdonk M, Jaroszewski L, Godzik A, Abraham RT, Schoenberger SP, Mustelin T. Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nat Immunol. 2003 Jan;4(1):44-8. Epub 2002 Nov 25.