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Query: IDP06298 methionine aminopeptidase [Streptococcus pneumoniae TIGR4] NP_345557 [Streptococcus pneumoniae TIGR4], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MITLKSAREIEAMDKAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENFLPLQIGVDGAMMDYPYATCCSLNDEVAHAFPRHYILKDGDLLKVDMVLGGPIAKSDLNVSKLNFNNVEQMKKYTQSYSGGLADSCWAYAVGTPSEEVKNLMDVTKEAMYKGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGIAGRGLRLREGMVLTIEPMINTGDWEIDTDMKTGWAHKTIDGGLSCQYEHQFVITKDGPVILTSQGEEGTYLast
1 -122.000IDP06298 methionine aminopeptidase [Streptococcus pneumoniae TIGR4] NP_345557 [Streptococcus pneumoniae TIGR4]  ali  100  1MITLKSAREIEAMDKAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENFLPLQIGVDGAMMDYPYATCCSLNDEVAHAFPRHYILKDGDLLKVDMVLGGPIAKSDLNVSKLNFNNVEQMKKYTQSYSGGLADSCWAYAVGTPSEEVKNLMDVTKEAMYKGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGIAGRGLRLREGMVLTIEPMINTGDWEIDTDMKTGWAHKTIDGGLSCQYEHQFVITKDGPVILTSQGEEGTY 286
2 -109.000IDP06103 gene: map; methionine aminopeptidase [Helicobacter pylori J99] NP_223937 [Helicobacter pylori J99]  ali follow..  30  3.ISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFIKSSHARPAFKGLYG----FPNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEV---------------------------DGYYGDSALTLPIGAISPQDEKLLACSKESLMHAISSIRVGMHFKELSQILEGAITERGFVPLKGFCGHGIGKKPHEEPEIPNYLEKGSGPKIKEGMVFCLEPMVCQKQGEPKI-LADKWSVVSVDGLNTSHHEHTIAIVGNKAVILTER...... 253
3 -108.000IDP02686 gene: map; methionine aminopeptidase [Francisella tularensis subsp. tularensis SCHU S4] FTT0393 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  38  3QIIIKTPQEIEKMRVAGRLAAEVLEMITPFVKEGVTTAELDKICHEYIVEQDAYPAPLNYHG----FPKSICASINHVVCHGIPADKKLKNGDILNIDITVKK---------------------------DGYHGDTSKMFMIGEPSVMAKKLVEVTHECLWKGIEVVKPGNHFGDIGAAIEKHAKKFGYSIVDAFCGHGIGANFHEPPHVMHHGKAGTGAMFEEGMIFTIEPMINIGKRAVSV-LKDGWTAVTKDRSLSAQWEHTILVTKDGYEVLTLREEEK.. 255
4 -106.000IDP02071 gene: map; methionine aminopeptidase, type I [Coxiella burnetii RSA 493] CBU_1388 [Coxiella burnetii RSA 493]  ali follow..  33  3.ISIKTPEELEKMRIAGQLAAEVLEMIEPYVKAGITTNELNAICHDYITQQKAIPAPLNYHG----FPKSICTSVNHVVCHGIPNDKKLKEGDIINIDITVIK---------------------------NGYHGDTSKMFAVGKIPSHAQRLVRITQECLYIGISMVKPGTPLGDIGAAIQAHAEKNHYSVVREYCGHGIGSIFHEPEQVLHYGRPGTGAVLRPGMTFTIEPMINAGKRYVKL-LNDDWTVVTKDRRLSAQWEHTLAVTETGYEVFTLRKDEKI. 256
5 -105.000IDP04144 gene: map; methionine aminopeptidase [Yersinia pestis CO92] YPO3337 [Yersinia pestis CO92]  ali follow..  36  4.VKIHSPAEIEMARAAGQAAAKVLEMIKPYVLAGITTDEIDRLCHDYIVNEKVIPANIGYHG----YTRTVCTSVNHVVCHGIPSDKKLKNGDIVNIDVAIIK---------------------------EGWYGDTSRMYFVGEPSVRAKRLVDITYQSMVAGIKAVRPGATLGDIGASIQQLAEGAGFSVVREYCGHGVGQEYHTAPQVLHYGIAQTGMLLKPGMIFTIEPMINAGKAATSV-LSDGWTVVTKDRSLSAQWEHTIAVTESGYDLLTPWPEGT.. 255
6 -102.000IDP01338 methionine aminopeptidase VC2261 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  32  3.IKIKNAVEIEKMRVAGRLAAEVLEMIEPHVKAGVTTEELDQICHKYITEQGAIPAPLNYHG----FPKSICTSINHIVCHGIPASEVLRDGDILNIDITVIK---------------------------DGYHGDTSKMFLIGDVSIEDKRLCHVAQECLYLALKQVKPGVQLGEIGTTIEKHIKTNNKSIVRDYCGHGIGAEFHEEPQVVHYKNSDRT-VLREGMIFTIEPMINAGKFGCRLDDEDSWTVYTADGKKSAQWEHTILVTATGCEILTLRSEESL. 273
7 -101.000IDP04451 gene: ampM; methionine aminopeptidase [Yersinia pestis CO92] YPO1043 [Yersinia pestis CO92]  ali follow..  34  3.ISIKTPEDIQKMRVAGRLAAEVLEIIEPYVKPGVTTGELDRICHDHITNHQAISACLGYHG----FPKSVCISVNEVICHGIPSDEVLKEGDIVNIDVTVIK---------------------------DGFHGDTSKMFIVGKPTILGERLCRVTQESLYLAIKMVKPGIRLRTLGKAIQKFVEAENFSVVREYCGHGIGEGFHEEPQVLHYDADDGGVVLQAGMAFTIEPMVNAGDYRIRT-MKDGWTVKTKDRNLSAQYEHTIVVTDNGCEIMTLRKDDTI. 256
8 -94.200IDP92114 methionine aminopeptidase, putative [Toxoplasma gondii ME49] TGME49_011330 [Toxoplasma gondii ME49]  ali follow..  26  58MEWIKPQAEVEGVRRACEVTREVLQVAVDFVKAPLTTEDIDRVVHEETMKRGAYPSPLRYCN----FPKSVCTSTNEIVCHGIPDDRPLQRGSICSIDVSCFL---------------------------DGFHGDCARTVPIGGFESPLRRLLVSAREATLEGIRVCAPGRRLSVIGDAIEEFLTRRGYSTIHDFCGHGIGRNFHEEPFVLHASNNMPG-RMLPGMCFTIEPVVCMGGTDYTT-WPDKWTIATTDGKPTAQFEHTVLITDTGVEVLTDCPDGET. 319
9 -91.500IDP92115 methionine aminopeptidase, putative [Toxoplasma gondii ME49] TGME49_048850 [Toxoplasma gondii ME49]  ali follow..  27  151NVHVHSEEEIQRLRETCLLGRRALDYAHSLVKPGVTTEEIDAKVHAFIVDNGGYPSPLNYQQ----FPKSCCTSVNEVICHGIPDFRPLQDGDIVNIDITVFF---------------------------KGMHGDLNETYCVGDVDEDSKRLIKGAYECLMEAVKQCRPGMMYRDVGRIVSDVADKYNLSVVRSYCGHGIGELFHTTPNIPHYRRNKAIGVMKPGHVFTIEPMINAGKSGDLL-WPDNWTACTIDGRRSAQFEHTLLVTETGVEILTKRLPCSP. 404
10 -90.900IDP92112 methionine aminopeptidase, putative [Toxoplasma gondii ME49] TGME49_057730 [Toxoplasma gondii ME49]  ali follow..  26  138PGEVQTPDALKKIRAAATVAANALKLGLDAAREGVTTEDLDKIVHEYIVSVGAYPAAVNFHN----FPKAVCASVNEAVCHGIPDLRPLQDGDIVTLDCTAYV---------------------------DGFFGDCAGTAMVGSVTEAHRTLVETTKDCLDEAIKLLYPGLPIKEVGRCITALAEQRGFSVVREFCGHFIGRKMHLPPLICHAYPNDTQGVFRVGQTFTIEPILCEGASDLFT-WNDGWTIVTQDGGRAAQFEHTILMTPEGAEVLTKPT..... 386
11 -58.400IDP92099 methionine aminopeptidase, type II, putative [Toxoplasma gondii ME49] TGME49_105460 [Toxoplasma gondii ME49]  ali follow..  22  153.AVRLEAVDIQAIRQAAECHRQVRRYIQGVARPGVKLVDLCRSLEAKSKELIAAHKLDRGWG----FP--TGCSLNNCAAHYTPDNRVLEQGDICKLDFGVQVG---------------------------GRIIDCAFSIAFD---EKFDSLIQATQDGTNVGISHAGADARLSEIGGFIQEAIESYPIKSIRNLTGHSIDLRIHAGKSVPIVKAPGGQTIMEEGEVYAIETFASTGRAHVS-EENDCSHYMKVRGSFTSQMEHTVFIGKNSVEVVSRGDD.... 479
12 -44.400IDP01139 gene: pepQ-1; proline dipeptidase BA_4422 [Bacillus anthracis str. Ames]  ali follow..  23  124LRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGA---------TSSSFDIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYY---------------------------KGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDYITEKGYGYFGHSTGHGIGLEIHEAPGL----AFRSDTVLEPGMAVTVEPGIYI------------------PGIGGVRIEDDIIVTSEGNEVITKSPKE... 349
13 -44.300IDP02816 proline dipeptidase, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA4014 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  26  125IRLIKDTHEIETMKIAAHIADEAFHHIITFLKPGISENDVRDELEFFMRKKGA---------TSSSFQIIVASGVRSSLPHGVASNKIIERGDIVTLDFGALY---------------------------DGYCSDITRTVAIGEPSEEFKKIYNVVREALKRGTEAIKPGETAKSIDDVTRNYITDCGYGYFGHSTGHGLGLEIHEPLRL----SQESKATLEEGMVVTVEPGIYI------------------PNWGGCRIEDDIVITKDGYEVITKSNRD... 350
14 -44.300IDP00677 proline dipeptidase SACOL1588 [Staphylococcus aureus subsp. aureus COL]  ali follow..  22  123IRDVKDADEIALIQKAANIVDETYEYILTVVKAGMTEKELKAILESKMLELGA---------DGPSFDTIVASGHRGALPHGVASDKIIEKGDMITLDFGAYY---------------------------NGYCSDITRTFAIGEPDPKLKEIYQIVLESQMKAINEIRPGMTGAEADAISRNYLESKGYGEFGHSLGHGIGLEIHEGPML----ARTIQDKLQVNNCVTVEPGVYI------------------EGLGGIRIEDDILITENGCQVFTKCTKD... 348
15 -43.500IDP00681 gene: pepQ; proline dipeptidase SACOL1756 [Staphylococcus aureus subsp. aureus COL]  ali follow..  24  127LRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTECEVVNHIEQTIKQYGV---------NEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIY---------------------------EHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGYFPHRLGHGLGLQEHEYQDV----SSTNSNLLEAGMVITIEPGIYV------------------PGVAGVRIEDDILVTNEGYEVLTHYEK.... 351
16 -43.500IDP02830 gene: pepQ-2; proline dipeptidase [Bacillus anthracis str. `Ames Ancestor`] GBAA4861 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  26  135LRLIKDEKELSILREAAKMADYAVEVGVNAIKEDRSELEVLAIIEHELKTKGI---------HKMSFDTMVLAGANSALPHGIPGANKMKRGDFVLFDLGVII---------------------------DGYCSDITRTVAFGEISEEQTRIYNTVLAGQLQAVEACKPGVTLGAIDNAARSVIADAGYGFFPHRLGHGLGISVHEYPDV----KAGNESPLKEGMVFTIEPGIYV------------------PNVGGVRIEDDIYITKDGSEILTKFPKE... 360
17 -40.600IDP00207 putative peptidase YPO1950 [Yersinia pestis CO92]  ali follow..  18  174IRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSR----------FNLISVGDNFSPKIIADTTPAKVGDLIKFDCGIDV---------------------------AGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPYNRGHLGHGDGVFLEEVPFV----STQATETFCPGMVLSLETPYYG------------------IGVGSIMLEDMILITDSGFEFLSKLDRD... 400
18 -34.200IDP00418 gene: pepP; proline aminopeptidase P II YPO0910 [Yersinia pestis CO92]  ali follow..  22  170MRLFKSAEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFTRHGA---------RYPAYNTIVGGGENGCILHYTENECELRDGDLVLIDAGC---------------------------EYRGYAGDITRTFPVGKFTPAQRAVYDIVLAAINKSLTLFRPGTSIREVTEEVVRIMVVGELGILKG-LSHWLGMDVHD---VGDYGSSDRGRILEPGMVLTVEP----------LYIAPDADVPPQYRGIGIRIEDDIVITATGNENLTA....... 420
19 -33.400IDP01115 xaa-pro aminopeptidase, putative BA_1901 [Bacillus anthracis str. Ames]  ali follow..  19  168LRVFKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGI---------KHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLG---------------------------AQKDYYNADISYTFPAGTFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGAVGLIQE-VSHFLGLDTHDVGTY-------KDRVLEEGMVITIEP------------------LYIEEESIGIRIEDDILVTKDGHENLSK....... 399
20 -31.200IDP04491 gene: pepQ; proline dipeptidase [Yersinia pestis CO92] YPO3765 [Yersinia pestis CO92]  ali follow..  13  161...YKTDYELACMREAQKTAVVGHRAAYEAFQSGMSEFDINLAYLMATGHRDTDVP----------YDNIVALNEHSAVLHTILQHQPPAEIRSFLIDAG---------------------------AEYNGYAADLTRTYTADR-DSDFAALISDLNTEQLALIDTIKSGERYTDYHVQMHQRIAKLTHNLVTG-LGHPLGLQVHDLNAPSKYPYLRCTRVLQPRMVLTIEPLLAPWRIGEFSKHFNWDRIDALKPYGGIRIEDNIVIHDKRVENMTRDLKLA.. 443
21 -17.400IDP01931 peptidase, M24 family protein [Coxiella burnetii RSA 493] CBU_0073 [Coxiella burnetii RSA 493]  ali follow..  18  299AKALKNPVEQKGAREAAIAMIQFLHWLENHWQSGVSEISAAEKLEFFRRGDSRCLDL--------SFPSISGFGPHGAIVHYSATDATINDSAPYLIDSGGQY--------------------------HYG--TDITRTIHLGTPTEEEKRLYTLV---LKGHLAIRQAVFPKGTCGEHLNALAHQFLWREALDYTGHGVGSYLHEGPQ--AITSRYTGIPLQPGMIVSNEPGV-------------------LTHKYGIRIENLCLVTEKFTV........... 527
22 -16.400IDP02506 peptidase, M24 family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0609 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  18  301SKALKNPVEINGSKEAHRKDAAAFISWWHWIENNYQGVDEIEAAAKLREFRAQQQGYVE-----DSFSYIVGHAANGAIIHYMAKKKKIDDQAPLLCDSGGQY--------------------------REG--TDITRVLHFGKPSKEHRKYYTLV---LKGHLGLGRAVFPKGTTGSQLDVLAREHLWHFCADYTGHGVGSFLHEGPQ-----NSVSKVELMPGMILSNEPGA-------------------FPGEFGIRIENLCYIKQRNQE........... 528

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.