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Query: IDP06313 hypothetical protein SP_1627 [Streptococcus pneumoniae TIGR4] NP_346067 [Streptococcus pneumoniae TIGR4], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLAVIAANGQAGKAIVEEAVKRGHEVTAIVRSENKSQAESIIKKDLFELTKDDLTGFDAVISAFGAYTPDTLPLHSKSIELFNQLLAGTQTRFLVVGGAGSLYIDETKTTRLLDTPDFPEEFKPLAKAQADELDLLRTKNNLNWTFVSPAVDFIPDGEKTGNYILAGEIFTTNEKGISQISYADYAIGLVDELEKGHHIKERISLLEKLast
1 -78.300IDP06313 hypothetical protein SP_1627 [Streptococcus pneumoniae TIGR4] NP_346067 [Streptococcus pneumoniae TIGR4]  ali  100  1MKLAVIAANGQAGKAIVEEAVKRGHEVTAIVRSENKSQAESIIKKDLFELTKDDLTGFDAVISAFGAYTPDTLPLHSKSIELFNQLLAGTQTRFLVVGGAGSLYIDETKTTRLLDTPDFPEEFKPLAKAQADELDLLRTKNNLNWTFVSPAVDFIPDGEKTGNYILAGEIFTTNEKGISQISYADYAIGLVDELEKGHHIKERISLLEK 209
2 -24.200IDP00208 putative dehydrogenase YPO1979 [Yersinia pestis CO92]  ali follow..  14  1MKVLVTGATSGLGRNAAQWLLEAGHEVYAIGRDQLAGEGATFIPLDLTEVCQQWLKTCDVVWHCAAGNPQDFHQTNVVVTHKLAQAAGREGVKRFIHISSPAVYFDFRHHHDLPETYRASRFSSSKYAAEQVLHECIAHYPDTTYVILRPRGLFGPHDRVIQQLSRDRNVLRLPGGGQAQLDLLNVVHAMMLATDNDG-SGAIYNITN. 235
3 -19.300IDP06439 gene: A45L; A45L [Monkeypox virus Zaire-96-I-16] NP_536582 [Monkeypox virus Zaire-96-I-16]  ali follow..  10  1MAYAVTGGAGFLGRYIVKLLISADQEIRVIDIVEDKVKVINYIQCDINDKVREALDGVNLIIHTAAYTDNEIMKVNYYGTQTILAACVDLGIKYLIYTSSMEAIGPNKHGNPFIGHEHTLSKRMAEQLVMKANNSVIMNGAKLYTCCLRPTGIYGEGDKLT-MYRTVDDDAVHSRVYVGNVAWMHVLAAKYIQYPGSAIKGNAYFCYD. 249
4 -18.000IDP00701 gene: cap5N; capsular polysaccharide biosynthesis protein Cap5N SACOL0149 [Staphylococcus aureus subsp. aureus COL]  ali follow..  10  4.NILITGVHGYIGNALKDKLIEQGHQVDQINVRNQ-------------LWKSTSFKDYDVLIHTAALVHNNSPQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGN-QLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEV........... 203
5 -15.600IDP01944 putative sugar-nucleotide epimerase/dehydratease [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1427c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  3KKVLITGGAGYIGSVLTPILLEKGYEVCVIDNSCFHNKNFTFINGDAMDLIRQEVAKADIIIPLAALVGAPLCMINYEAVKMISDFASPSQI--FIYPNTNSGYGIGEKDAMCTEESPLRPI---SEYGIDKVHAEQYLLDKGNCVTFRLATVFGISPRMRLDLLVND-VLFEEHFRRNYIHVRDVVKGFIHGIENYDKMKGQA..... 230
6 -14.100IDP00492 hypothetical protein YPO1559 YPO1559 [Yersinia pestis CO92]  ali follow..  14  13.KLLLTGATGFLGGAVLEKLLLADFNYLLLVRANTPININHVLLGDLAEP-DVRIDDVTHVINCAAIASFGNNPLIWKTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLHCPTLPLVFARPS--IVVGHTRLGCQPSSS-KFMCSLDDHIDVIPVDCADALLYILEYPNLPDDIYHISA. 266
7 -13.800IDP02802 short chain dehydrogenase/reductase family oxidoreductase [Bacillus anthracis str. `Ames Ancestor`] GBAA3471 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  1MRVLITGGNRGLGLQLVKVFHENGHIIYPLVRTEVAVTQLKPILADLAADLEEYTEYMDLVINNAGITGKETEVLHTNAVKGTYMALAKSDHPRIINVSSGSLHKMANKEFPQGHFSYSYRIAKAAQNMLTLCLQQEFENKGISVTAIHPGKLKTEIGAFDAN-----------------MTPAEGTKNIYDWVIDSN........... 217
8 -13.600IDP02780 NAD-dependent epimerase/dehydratase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA0507 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  4.KCLITGGAGFIGSHLAEELVGRGYNVTIVKYHDELMKEIRVIPISVLDSIYELVNQHDVVFHLAAILGVKTTETNFDGTRNILQAALKGKKKVVFASTSEVYGKAKEEGDRLYGATSKIRWSYAICKTLEETLCLGYALEGLPVTIVREDILVYGDGEQTRCFTYVSDAVIINIGSENEKSIKEVAEVIKKLTDSSS........... 264
9 -13.400IDP02579 gene: galE; UDP-glucose 4-epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1131c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  1MKILISGGAGYIGSHTLRQFLKTDHEICVLIEDLQKTRAFKFFEQDLSDGVKALFEKFDAIVIEVFESMQNPLKYYMNNTTNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVDASMANPEFKHCILRKVAAECAAGKRDKLFIFGDDYDTKDGTCRDFIHVDDISSAHLAALDY............. 245
10 -13.200IDP93871 dTDP-4-dehydrorhamnose reductase [Yersinia enterocolitica subsp. palearctica Y11] YP_006005171 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  11  3RKILITGGTGMLGAYVTSALKDTDYNVIVTERNTLNLSVPEAIFSYITAEKPDVILHFAAEVDLCEREPARAGIYNHLATEQIAQAAKFCGAWLLYLSSSNVF---GGEGKLSYNELDIPLPMNYYGRSKLIGESSVRNACTNNHLIIRAGWMIGGGPDKDHKFAGSTSIKAVSDRLGSITSAMQLCNFIIWAINKRHT.......... 209
11 -13.200IDP95160 uridine diphosphate galacturonate 4-epimerase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001336140 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]  ali follow..  16  1MKFLVTGAAGFIGFHIAQRLLNEGHNVVGIDNDRLAYPAFHFQQLDLADREG-ATEQFDRVIHLAAQAGVRYSDANLMGYLNILEGCRHTKVKHLVYASSSSVYGLNRKMPFSTEDSV-VSLYAATKKANELMAHTYSHLYGIPTTGLRFFTVYGPWGRPDMALFKFTKAMLEGKSNYGKMKRDDIVEAVVRVLDVIP........... 235
12 -13.000IDP02656 short chain dehydrogenase [Francisella tularensis subsp. tularensis SCHU S4] FTT0558 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  1MKIIVFGATGTIGRATTQSLKNAGYEIVTVSFSGDKTDAVDIQDSQSIKSLFDKIGNFDALISTTGKVAFKNITAIEQQDWNLSLNNKLLGQINLVQIGSKYINDGGSFTLTSGILNFEPIAMGSIAATVNAGLEGFVKAASLEYNVVSP-----------TVVEEALDKYAPFFIGFKAVKAEEVANAYLKSVAG............. 192
13 -12.400IDP01195 gene: rfbD; dTDP-4-dehydrorhamnose reductase BA_1231 [Bacillus anthracis str. Ames]  ali follow..  12  3ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFISWLYGKYGNNFVKTMIRLGKER--EEISVVADQIGSPTYVADLNVMINKLIHTSLY.......... 204
14 -12.100IDP06311 UDP-glucose 4-epimerase [Streptococcus pneumoniae TIGR4] NP_346261 [Streptococcus pneumoniae TIGR4]  ali follow..  17  1MAILVTGGAGYIGSHTVVELLNLGKEVIIVDNLSNSSIRPVFYELDVCDALRKVFEQEDAAIKAVGESVQKPVMYYKNSTLALVEVMSEFNVKKIVFSSSATVYGINNQSPLIETMQTSATNPYGYTKVMLEQILKDVHVADSEWSILMPYIAQVAVGKLSELSVFGNDYDTLDGTGRDYIHVVDLAIGHIKALEK............. 248
15 -12.000IDP02480 gene: galE-2; UDP-glucose 4-epimerase [Bacillus anthracis str. `Ames Ancestor`] GBAA5700 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  1MAILITGGAGYIGSHTCVELLNNNYKIIVVDNLSNSSKQFEFYKENVLNKMNEIFLNIEAVIKAVGESTTTPLAYYYNSAIVLCDVMQKHNVKNFIFSSSATVYGIPKTLPITEEFPLSVKLMIEQIMRDVAKADDEWSIALLRYNNLMPYVTQVAVGKLKELNIFGNDYPTKDGTGRDYIHVVDLAKGHVKALEK............. 248
16 -12.000IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  19KKVAIIGF-GSQGHAHAMNLRDNGVNVTIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAP-----DEIQADIFNVEIKPNLSEGKA--IAFAHGFNI.......................................................................................................... 113
17 -11.900IDP06064 3-hydroxyacid dehydrogenase [Helicobacter pylori J99] NP_223303 [Helicobacter pylori J99]  ali follow..  16  1MKIGWIG-LGAMGTPMATRLRDAGLEVSVYNRTESKAAPLKEKGVAVYTSPIDLAAKVDLVFTMLSDKAANMSTIAPLESLSLEKIAQKHQATYLEAPVSGSVGAAKAGALLIL............................................................................................... 132
18 -11.900IDP01194 gene: rfbB; dTDP-glucose 4,6-dehydratase BA_1230 [Bacillus anthracis str. Ames]  ali follow..  12  1MNILVTGGAGFIGSNFVHYMLQSYYKIINFVKSIQDHPNYYFVKGEIQNLLEHVIKERQVIVNFAAESHVDRSDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPDGLNVRDWLHVTDHCVYNIGGNNEKTNVEVVEQIITLLGKTK........... 264
19 -11.800IDP01640 short chain dehydrogenase/reductase family oxidoreductase [Bacillus anthracis str. `Ames Ancestor`] GBAA4357 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  10..IVITGASSGIGEQVAMQVAEQGATPVLMARTEEKLKALAYYVLDVSEKVLQEVGRIDILVNNAGFGIFKTFEDASACTKAVLPYMVKRNEGHIINIASLAGKIATPKSSAYAATKHAVLGFTNSLRME-------LSSTNVFVTAINPGPIDTN--------IADQSGTYVKNMGRYMLKPTYVAEQIVKSMQTKK........... 230
20 -11.700IDP00650 NAD-dependent epimerase/dehydratase family protein SACOL0113 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  3.RVLITGGAGFIGSHLV-DDLQQDYDVYVLRENIKSLADDHVFELDIREAVEQIMKTYDYVIHLAALVSVAESEINVVATLRLLEIIKKYNIKRFIFASSAAVYGDLPDLPKSDQSLILPSPYAIDKYYGERTTLNYCSLYNIPTAVVKFFNVFGPRQDPKSQYSEHNKPFTFFGDGLQTVYVYDVVQSVRLIMEHKDAIGHGYNIGT. 243
21 -11.600IDP90552 gene: rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase YPO0058 [Yersinia pestis CO92]  ali follow..  11  2..IIVTGGAGFIGSNIVKALNNIGYKDILVVDNVDLDIADYMDKEDFVAVAGDDMGDIDAIFHEGACSSTTEWDNNYQYSKDILHFCLDRSIPFLYASSAATYGGRTDNFIEDRQYEQPLNVYGYSKFLFDQYVREILPQADSQICGFRYFNVYGPREGHKGSMNAGERPKLFAGSENFKIYVGDVADVNLWFWQNGV........... 229
22 -11.500IDP06240 UDP-glucose 4-epimerase [Streptococcus pneumoniae TIGR4] NP_346051 [Streptococcus pneumoniae TIGR4]  ali follow..  19  3EKILVTGGAGFIGTHTVIELIQAGHQVVVVDNLVNSNVEIPFYEADIRDTLRDIFKQETGVIKAVGESTRIPLAYYDNGTVSLLKAMEENNCKNIIFSSSATVYGDPHTVPILEDFPLSVTNPYGRTKLMLEEIDIYKADSEWNVVLLRPYVTQVAVGKLEQVQVFGDDYDTEDGTGRDYIHVVDLAKGHVAALKK............. 250
23 -11.400IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  18KKVAIIGY-GSQGHAHAQNLRDNGFDVVVGLRKGKSWDKAK-EDGFSVYTVAEAAKQADVVMILLP-----DELQPEVYEEEIAPNLQAGNS..................................................................................................................... 102
24 -11.300IDP00951 gene: ycdW; putative oxidoreductase STM1135 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  137FSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGR--EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGA------YVLNLARGVHVQEAD-------LAALDSGKLKGAMLDVFSQEPLPQESPL-WVAMTP........................................................... 274
25 -10.600IDP02149 gene: fcl; putative fucose synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1428c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  6.KIYIAGHKGTAGTALVENLQKRGFNNLVLKTRQELDLVNQQAVAKFFKEEKPEYVFLTAVLPCGAANVAQRADFIYENLMNVIHNSFLNNVKKLVFFGSGYMYPENAKNPLKEEYLFQGDLFGAAKIAGAIMCESYNIQYGTNFITLVLNNLYGTKANFDFGKSRVLPALLRKFHLAKLLSEGNITQILQDLKMNN............ 210
26 -10.500IDP02121 Short-chain dehydrogenase/reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT0360 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  8..ILITGCSGGIGYATAVHLKNLGHRVFASARQQKDVEALSTYLIDVTNYIDNALASLDVIFNNAGYGQAGALEDIDNLTYKALKIMRKQGYGKIIQHSSVL-------GLVAMKYRGAYNASKYAIEGLTDTMRLELRDSNIFITSLNTGPI........................................................ 183
27 -10.400IDP90559 gene: rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase [Vibrio cholerae O1 biovar eltor str. N16961] VC0240 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  2..IIVTGGAGMIGSNIIKALNERGITDILVVDHLKNGRKFKMDRDDFLAMAGDDFGFIDAIFHEGACSATTEWLNNYEYSKELLHYCLDREIPFLYASSAATYGEEEPQYEGALNVYGYSKQQFDNYVRRLWLDAKQHDETLSQITGFRYFNVYGPREQHKGSMNAGENPKLFAGSENFKVYVGDVAAVNLWFLDHGV........... 234
28 -10.200IDP91958 Trk family potassium uptake protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004562 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  15  5.TIGILG--GIFGSSVLAALAKQDMNIIAIDDHAERINQFEGVIGDITDERSAGIDTCDTVVVATGENLESSVLAVMHVPTVIAKVKSQTAKKVLEKIGADSVISPE...................................................................................................... 122
29 -10.100IDP01104 potassium uptake protein, TrkA family BA_4191 [Bacillus anthracis str. Ames]  ali follow..  22  7.EFAVIGL-GRFGGSICRELAQLGMEVMAIDSDEDKINEFAAVIADSTDEKSLGIRNFDHVVVAIGDNLNSSILTTLIVKNITVKAQNDYHEKVLSKIGADHIVHPE...................................................................................................... 124
30 -10.100IDP00666 TrkA potassium uptake family protein SACOL1096 [Staphylococcus aureus subsp. aureus COL]  ali follow..  22  4.EYVVIG--GRFGGSIVRELNALDMDVMAIDHDENRVNEYSAVVADTTDEKSLGIRNFDHVIVAIGENIQSSTLTTLIVKKVTAKAQNDYHAKILNKIGADTVVHPE...................................................................................................... 121
31 -9.710IDP90837 gene: rfbD; dTDP-4-dehydrorhamnose reductase [Shigella flexneri 2a str. 2457T] S2226 [Shigella flexneri 2a str. 2457T]  ali follow..  11  1MNILLFGKTGQVGWELQ-RALAPLGNLIALDVHSTDYC-GDFSNPEGVAETVKKIR--DVIVNAAAHTAVDKAELNATCVEAIAKAANEVGAWVIHYSTDYVFPGNGDTPWLETDATAPLNVYGETKLAGEKALQEHCAKHLISWVYAGKGNNFAKTMLRLAKER--EELAVINDQFGAPTGAELLADCTAHAIRVAANKPEVAGL... 212
32 -9.610IDP04467 putative nucleotide sugar dehydrogenase [Yersinia pestis CO92] YPO2174 [Yersinia pestis CO92]  ali follow..  11  1MKVTVFG-IGYVGLVQATVLAEVGHDVLCIDIDANKVADLKKGRIAIFEPAQAGVAHGVIQFIAVGTPPDEDGAADLKYVLDVASTIGTYMDSPKVIIDKSTVPVGTADKVHQVIQAILEQRGEKIDFSVVSNPEFLKEGAAVADCKRPERIVIGIDTDDSGALELISELYEPFNRNHDRMLVMDIRSAELTKYAANGMLATKISFMNE 228
33 -9.560IDP02553 polysaccharide biosynthesis protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1293 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  6  6.NILITGGTGSFGKTYTKVLLEN-NKIIIYSRDELKQPCMRYFIGDVRDKLSAAMRDVDFVIHAAAMKPMECIKTNIHGAQNVIDACFENGVKKCIALST-----------KACNPVNLYGATKLASDKLFVAANNIAGNKQTRFGVTRYGNVVGSRGSVVPFFK----KLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERMH. 219
34 -9.520IDP02551 gene: waaD; ADP-L-glycero-D-mannoheptose-6-epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1151c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  1MKIAITGGAGFIGSQLA-LNLQEKHEILIIDKMRSSATDGELFAGDINDEKVEIIFHQAAISDTTVFDQTKVLQTNLNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKKKYYDKAHLVGLRYFNVKNPRLFEGSDQIYRDFTYIKDVIVYNVGSGKARTFQDIVDILQKELKTD............ 262
35 -9.440IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  18  17KTVAVIG--GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-ADGFEVMSVSEAVRTAQVVQMLLP............................................................................................................................................... 80
36 -9.140IDP00758 gene: cap5E; capsular polysaccharide biosynthesis protein Cap5E SACOL0140 [Staphylococcus aureus subsp. aureus COL]  ali follow..  10  6.ILLITGGTGSFGNAVMKQFLDSNKEIRIFSRDEKKQSKLKFYIGDVRDSVETAMRDVDYVFHAAALKPVEAVKTNIIGTENVLQSAIHQNVKKVICLST-----------KAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFI-------IKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAE. 217
37 -9.040IDP00481 gene: gltD; glutamate synthase subunit beta YPO3558 [Yersinia pestis CO92]  ali follow..  15  148.RVAVIGA-GPAGLACADVLARNGVQAVVFDRHPEIGGLLTFLEKEVMITMEALLKDYDAVFLGVGTYQSMRGGLENEEANGVYDALPNMQGKRVVVLGGGDTAMDCVRSSIRQGATDVVCAYRRDEVNMPGSKREVAREEGVEFKFNLQPLSIEVNSNQLGAPDAQGRRMAEQIPGSEHVLPADAVVMAFGFRPHSMEWLAAHDV... 414
38 -9.020IDP06105 gene: dapB; dihydrodipicolinate reductase [Helicobacter pylori J99] NP_223178 [Helicobacter pylori J99]  ali follow..  19  1MKVGVYGASGRIGKLLLEELKGKGLELSSVFVRQKCETDFSSFSHAVTNDLKAFVKACECVVD------------FSLPKGVDHLLDVLLECPKILVSGTTGLEKET...................................................................................................... 99
39 -9.010IDP90223 gene: Asd; Aspartate semialdehyde dehydrogenase Asd SA1226 [Staphylococcus aureus subsp. aureus N315]  ali follow..  18  2TKLAVVGATGLVGTKMLETLNRKNIELVLFSSARSAGQEVEFQEKTYT-TDARASEHFDYVLMSAG----------GGTSEHFAPLFEKAGAIVIDNSSQ............................................................................................................. 97
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;