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Query: IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFRLTNKLAVSNLIKNRKLYYPFALAVLLAVTITYLFYSLTFNPKIAEIRGGTTIQATLGFGMFVVTLASAIIVLYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKELVVFGILTVGAGIGIGALFDKLIFAFLLKLMKLKVELVATFQMNVVIAVLVVFGLIFLGLMFLNALRIARMNALQLSREKASGEKRGRFLPLQTILGSISLGIGYYLALTVTDPLTALTTFFLAVLLVIFGTYLLFNAGITVFLQILKKNKKYYYQPNNLISVSNLIFRMKKNAVGLATIAILSTMVLVTMSAATSIFNSAESFKKVLNPHDFGVSGQNVEKEDLDKLLSQFASDKGYSVKEKEVLRYSNFGIANQEGTKLTIFEKGQNRVQPTTVFMVFDQKDYENMTGQKLSLSGNEVGLFAKNDGLKGQKALTLNDHQFSVKEEFNKDFIVNHVPNKFNILTTDYNYLVVPDLQAFLDQFPDSAIYNQFYGGMNVNVSEEEQLKVAEEYENYLNQFNAQLDTEGSYVYGSNLADASSQMSALFGGVFFIGIFLSIIFMVGTVLVIYYKQISEGYEDRERFIILQKVGLDQKQIKQTINKQVLTVFFLPLLFAFIHLAFAYHMLSLILKVIGVLDTTMMLIVTLSICAIFLIAYVLIFMITSRSYRKIVQMLast
1 -132.000IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali  100  1MFRLTNKLAVSNLIKNRKLYYPFALAVLLAVTITYLFYSLTFNPKIAEIRGGTTIQATLGFGMFVVTLASAIIVLYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKELVVFGILTVGAGIGIGALFDKLIFAFLLKLMKLKVELVATFQMNVVIAVLVVFGLIFLGLMFLNALRIARMNALQLSREKASGEKRGRFLPLQTILGSISLGIGYYLALTVTDPLTALTTFFLAVLLVIFGTYLLFNAGITVFLQILKKNKKYYYQPNNLISVSNLIFRMKKNAVGLATIAILSTMVLVTMSAATSIFNSAESFKKVLNPHDFGVSGQNVEKEDLDKLLSQFASDKGYSVKEKEVLRYSNFGIANQEGTKLTIFEKGQNRVQPTTVFMVFDQKDYENMTGQKLSLSGNEVGLFAKNDGLKGQKALTLNDHQFSVKEEFNKDFIVNHVPNKFNILTTDYNYLVVPDLQAFLDQFPDSAIYNQFYGGMNVNVSEEEQLKVAEEYENYLNQFNAQLDTEGSYVYGSNLADASSQMSALFGGVFFIGIFLSIIFMVGTVLVIYYKQISEGYEDRERFIILQKVGLDQKQIKQTINKQVLTVFFLPLLFAFIHLAFAYHMLSLILKVIGVLDTTMMLIVTLSICAIFLIAYVLIFMITSRSYRKIVQM 662
2 -30.400IDP91362 peptide ABC transporter permease [Vibrio vulnificus CMCP6] VV1_2836 [Vibrio vulnificus CMCP6]  ali follow..  11  143....................................................KAFHLNLTAMGMLSFLVGLFIFYQAMSLSLIQRQPLVGIMRQTGVTGMQLAKALLLELTILVLVAWACGNVLGLFLANELIPAVSASLGANVGLSISWSWESSLYSLLLAVLGALISCLWPLIRLLKSQPIRLSAKLSLVRFAGKEFAWQALAACGFAVAAIAVYQAPKTPESG----FTIIALMLMSVALFMPFLMWKVFNSFSYTLR---WVNLRWFFADMAASMSYRGVAMMAFMLALAANIGVETMVGSFRDTTDKWLTQRLAADLYIYPTNNSAARLSNWLEAQPEVDE-------VWWRWEKELADERDIVQVVSTGPSDGELEALTVKLGVPNYWYHLHHSKSVMISESMALKLDIRPGDYLDLAAPLGGGWLVVGVYYDY-------------GNPYNQVLLSHRNWLYAFAGSGNVGLGVL--------------LKDNVNGEGLKHRLENIFRLTSERVFDNNNIYSQAMRVFDHTFAIADTLGNITLVIAVFGLFFATLAGEMSRQKNISILRCLGVSGKELIILGGLQLFVFGVISALIAVPLGMALATLVVDIVIKQSFGWSLQLQIDVIEYGETILWAMIAIMLAGALPVIRLVKN 715
3 -19.800IDP05431 hypothetical protein lmo1224 [Listeria monocytogenes EGD-e] lmo1224 [Listeria monocytogenes EGD-e]  ali follow..  12  581.................................YYVLDRNDNPGYSEYKENADRLTSLSTAFPIFFFLIAALVCLTTMTRMVEEQRTQIGTLKAFGYSNGSIILKYLVYGSIASVIGSVLGILIGFFFPNIIFNAYKSMYEMP-SVDIGFYWSYSLLALFVALFCTTFTAYVACRAELRANAATLMR-----PKAPKI-----------------------------------------GKRIFLER-----ISFIWKRMNFTSK----VTARNLFRYKQRMLMTVLGVAGCTALILTGFGLRNSISDIAKMQYGQIMKYDAAIYQDMSAPPAAKETFDEIMNDSNIKSKLAMSQTNIETVKSGQSAQTTSIIVPKNLNELPNYIVL-------DRASHTTEKLTDDGAIITEKLAKLFDVKP----GDTITVKNAENDKFQIKVSA---ITENYAMHYIYMTKAYYQQVFKEKPSYNLDLL-------------MLKDTSEKVESDFAEKLTDSKAILNVTFSNNVSSLLNETLDSLNIVIVVLITSAALLAFVVLYNLTNINVSERIRELSTIKVLGFYPKEVTMYVYRENIILTLMGIAAGFILGFFLHRFIITTAEVDQMMFSPAISWTSYLFSGILTLVFATVVMVVMHIKLKRIDM 1128
4 -15.300IDP91937 ABC transporter membrane-spanning permease - Pep export [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100003555 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  17  281....................................................ATFQTFLTIFLYGMLIAGAGALILVLSLWLRERVYEVGILLALGKGKSSIFLQFCLEVVLVSLGALLPAFVAGNGITTYLLQTLLASDTLAKASSLSTSILSFAESYVFLVLLSCLSVALCFLFLFRKSPKEILSS.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 423
5 -12.600IDP91944 ABC-type antimicrobial peptide transport system, permease component [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100000842 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  13  283.................................................QSFSFMTTIISSIAGISLFVGGTGVMNIMLVSVTERTREIGLRKALGATRANILIQFLIESMILTLLGGLIGLTIASGLTALAGLLLQGLI---EGIEVGVSIPVALFSLAVSASVGMIFGVLPANKASKLDPIEALRYE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 419
6 -11.300IDP91928 ABC transporter membrane-spanning permease - amino acid transport [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100008890 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  118......................YTITSTWSDFFKIDQATLLEPTYKSAVEVINRDLLLSAIVFVLAILLLVLVTVY----QPMMEMKRVGVQKLLGFQDRAVLADVVKGNLYLLLGGALVINLGVFFLLDYKPKDLFP---------------MLWLSHFLLLQLYLFISWLTYLLIQKMTISSLLKGFSSFKFGLLFNYLMKIGTTILLTVLLVGVGKSLEQ-----------------------------ENKELDYQKQWISQGNYLTLE-------------------------TFQLNDNLWQEQLAGSGKALDYFYRFYQDLVEKTQAGYVQSSSLPVKNFVQSEQIQQYQLTDTVDVYYANRNFLKSKGFKLPDTGIKKVILMPASTKGEEDKNQLLGKLIAFHSMKYEEQQKRTIEEMDVEIAYYEGDWSFFPYSDKRKENL-----SNPIISLVNDSDMMWDEKASLSTTGLNNPIKIENTVQHQKEITELVEKLSDGNYLKFSSIQA--IQQEKVDSYRDAVRNFNLLFAL-FGLLSMMISYFLLVTTFLL------KRRDIITKKFMGWKLVDRYRPLLVLLLLGYSFPLLVLIFFA-----------------AFLPLLLFAGFTCLDILFVLGLASRMEKRSLVELLK. 664
7 -10.600IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  8  1..............................................................................................................................................................................................................................................................MINRDNKKAITKKGMISNRLNKFSIRKYTVGTASILVGTTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLI............................................................................................................................ 284
8 -10.500IDP00530 gene: ccmC; putative heme exporter protein C YPO2736 [Yersinia pestis CO92]  ali follow..  12  1MWKWFHQFA-ERLYPLCGRLIPWFGGGAIICLAVGWVWGLGFAPSDYQQGDSFRI---LHVPAAIWSMGIYMSMAIAAFVGLVWQIKMADNLVAAMAP--------------VGAVLTFIALVTGSAWGK-------------PMWGTWWIWDARLTSELVLLFLYL-------------GVIALYNAFDDRKLAGRAAGILVLVGVVNLPIIHFSV-STNMQQSIDPSMRSPLRWAILGFLLCFITLTLMRLRNLILQQE................................................................................................................................................................................................................................................................................................................................................................................................................. 229
9 -9.600IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  8  1..............................................................................................................................................................................................................................................................MINRDNKKAITKKGMISNRLNKFSIRKYTVGTASILVGTTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVND.............................................................................................................................. 282
10 -8.120IDP91038 hypothetical protein SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3] SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  9  1...............................................................................................................................................................................................................................................................MRDKKGPVNKRVDFLSNKLNKYSIRK---TVGTASIL-------IGSLMYLGTQQEAEAAENNIENPTTLKDNVQSKEVKIEEVTNKDTAPQGVEAKSEVTSNKDTIEHEASVKAEDISKKEDTPKEVANVAEVQPKSSVTHNAEAPKVRKARSVDEGSFDITRDSKNVVESTPITIQGKEHFEGYGSVDIQKN-------------PTDLGVSEVTRFNVGNESNGLIGALQLKNKIDFSKDFNFKVRVANNHQSNTTGADGWGFLFSKGNAEEYLTNGGILGDKGLVNSGGFKIDT----GYIYTSSMDKTEKQ........................................................................................... 290
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.