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Query: IDP06423 gene: M5R; M5R [Monkeypox virus Zaire-96-I-16] NP_536511 [Monkeypox virus Zaire-96-I-16], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MENVPNVYFNPVFIEPTFKHSLLSVYKHRLIVLFEVFVVFILIYVFFRSELNMFFMPKRKIPDPIDRLRRANLACEDDKLMIYGLPWITTQTSALSINSKPIVYKDCAKLLRSINGSQPVSLNDVLRRLast
1 -97.900IDP06423 gene: M5R; M5R [Monkeypox virus Zaire-96-I-16] NP_536511 [Monkeypox virus Zaire-96-I-16]  ali  100  1MENVPNVYFNPVFIEPTFKHSLLSVYKHRLIVLFEVFVVFILIYVFFRSELNMFFMPKRKIPDPIDRLRRANLACEDDKLMIYGLPWITTQTSALSINSKPIVYKDCAKLLRSINGSQPVSLNDVLRR 128
2 -7.300IDP06486 gene: A21L; A21L [Monkeypox virus Zaire-96-I-16] NP_536558 [Monkeypox virus Zaire-96-I-16]  ali follow..  23  1.............................MITLFLILCYFILIFNIIVPAISEKMRRERAAYVNYKRLNKNFI-CVDDRLFGYNFTTSGIKAKVAVNKNVPIP---CSKINEV............... 80
3 -6.410IDP06124 hypothetical protein jhp0592 [Helicobacter pylori J99] NP_223310 [Helicobacter pylori J99]  ali follow..  4......................LTYYAYMYLILFVCLLPVLLVGLAWRLTRPPLKQNIPNKSLSLENLNEQIKNLQSVPALEKLKNRFNERFKICPKDKETLWLE----TIQNLVASEFFELEDAIN. 104
4 -5.600IDP90371 CHLPS hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_109 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  2.........................FKLIKSAFLIACCIVGYFWIKKESIVEQWLSQQLHAQVTVGNISPGLSKTKIRHLCIHNPLSSDKYPYAVEIEYVSLKYSIVTMILSKKIDISDVILQGT... 101
5 -5.590IDP06122 gene: exbD_2; biopolymer transport EXBD protein [Helicobacter pylori J99] NP_223977 [Helicobacter pylori J99]  ali follow..  10..............................LNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVIS------DEHDNIFVDDKPTNLEALSAVVKQTDPKTLIDL...... 96
6 -5.480IDP06069 gene: exbD_3; biopolymer transport protein [Helicobacter pylori J99] NP_224057 [Helicobacter pylori J99]  ali follow..  12  1MKKVESMNVVPFI------------------IMLVLLVIVLTTASFVQTSKLPISIPQVDKDS------TDSKDVLDKKQVTIAISNKG----SFYFDDKEISFENLKHKVSTLAKDTPIVL...... 95
7 -5.240IDP00156 gene: mshF; MSHA biogenesis protein MshF VC0407 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  5..............................FERVRFVLWFVLVVVLLTAMFSVWRSMFSDMLHTALEMTRLQLI--DRANTYKQEWVLQGRPALLQIEQAEIPMQDCEKVLFLLYPDRKV........ 104
8 -5.040IDP04292 general secretion pathway protein H [Yersinia pestis CO92] YPO0812 [Yersinia pestis CO92]  ali follow..  13  8..............................FTLLELLLAMIIISGLYYSVLITLPKGSGVVKSEAENLVQGLRYINQKIRH............................................... 58
9 -4.730IDP06445 gene: H3L; H3L [Monkeypox virus Zaire-96-I-16] NP_536520 [Monkeypox virus Zaire-96-I-16]  ali follow..  17  277.........TPLI-------SFFGLFDINVIGLIVILFIMFMLIFNVKSKLLWFLT........................................................................ 316
10 -4.710IDP06454 gene: Q1L; Q1L [Monkeypox virus Zaire-96-I-16] NP_536487 [Monkeypox virus Zaire-96-I-16]  ali follow..  566......................LNDQYAKVVIFFNTIIEYIIATIYYRLTV---LDNYTNVKHFVSKVLHTVMEACGVLFSHIKVNDK-VDKGTVPSYLYHLSINVISIILDDINGTR.......... 665

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.