current user: public

If you have questions about the server, please let us know.

Query: IDP06433 gene: E3R; E3R [Monkeypox virus Zaire-96-I-16] NP_536527 [Monkeypox virus Zaire-96-I-16], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230
# Score Template Links and tools%idFirst MDIFIVKDNKYPKVDNDDNEVFILLGNHNDFIRSKLTKLKEHVFFSEYIVTPDTYGSLCVELNGSSFQHGGRYIEVEEFIDAGRQVRWCSTSNHISEDIHTDKFVIYDIYTFDSFKNKRLVFVQVPPSLGDDSYLTNPLLSPYYRNSVARQMVNDMIFNQDSFLKYLLEHLIRSHYRVSKHITIVRYKDTEELNLTRICYNRDKFKAFVFAWFNGVSENEKVLDTYKKVSDLILast
1 -134.000IDP06433 gene: E3R; E3R [Monkeypox virus Zaire-96-I-16] NP_536527 [Monkeypox virus Zaire-96-I-16]  ali  100  1MDIFIVKDNKYPKVDNDDNEVFILLGNHNDFIRSKLTKLKEHVFFSEYIVTPDTYGSLCVELNGSSFQHGGRYIEVEEFIDAGRQVRWCSTSNHISEDIHTDKFVIYDIYTFDSFKNKRLVFVQVPPSLGDDSYLTNPLLSPYYRNSVARQMVNDMIFNQDSFLKYLLEHLIRSHYRVSKHITIVRYKDTEELNLTRICYNRDKFKAFVFAWFNGVSENEKVLDTYKKVSDLI 233
2 -6.550IDP06117 hypothetical protein jhp0759 [Helicobacter pylori J99] NP_223477 [Helicobacter pylori J99]  ali follow..  12  42....................................................................................................................................IFIKDSKLLFAFKDLWASKEFNQRFAKEISHFLNTQGHACGLDELDALEILGYVPKDSLEKANFYAPIKKQAYRPSALGLFHNPIKDARLHECFEKARALI 144
3 -5.840IDP90848 gene: holA; DNA polymerase III subunit delta [Vibrio cholerae O1 biovar eltor str. N16961] VC0953 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  1MRIY--AEKLAESLHKTLYPIYLVFGNEPLLLQEAKTAIEKTA-KHRFSADAGLDWNAVYDCCQALSLFSSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENA-CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSL-------EKLALLYPDGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLML.. 237
4 -5.730IDP90919 gene: holA; DNA polymerase III subunit delta [Yersinia pestis CO92] YPO2608 [Yersinia pestis CO92]  ali follow..  7.......EQLVAQLHEGLRACYLLCGNEPLLLQESQDHIRRVAEHFSFALDAHTEWEHIFSLCQALSLFASRQTLLLSFPDSGLTAPISEQLVKLSGLLHPDILLILRANKLTKAQENS-VFVSCQTPEQAQLPRWVSARAKSLNLNVDDAAIQLLCYCYEGNLLALSQAL-------ERLSLLYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLMGKSKRAWHILQQLQQ.. 238
5 -5.670IDP04212 gene: holA; DNA polymerase III subunit delta [Salmonella typhimurium LT2] STM0646_1_343 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  7.......EQLRAQLNEGLRAAYLLLGNDPLLLQESQDAIRLAAAHHAFTLDPSTDWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTKAQENA-VQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLLALAQAL-------ERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL.. 238
6 -4.810IDP05563 hypothetical protein lmo2417 [Listeria monocytogenes EGD-e] lmo2417 [Listeria monocytogenes EGD-e]  ali follow..  63LKIVKYTDYVMPNKALEEGDLDANYFQHKPYLELEEKEKGYKIHIEPMGIYSKKVKDIKDLKDGAQVLLSNSKSD------WPRVIGIFVDNGLLTLKDGVKPQDATFDDIKDNPKNLKFKYDFDPAYLMTAYNNEEGDVVAINSNFVVDQGLN--------PSKDAIAIESKDSPYANIVVTTEKKKDDKNITELVKVLHSKEIQDYITKEWDGAV................ 271
7 -4.620IDP95381 set238a-018 [Vibrio cholerae]  ali follow..  10  1MDIIMFWKKKSHDIDLKELVPK--AGDTRKF------LTGEAVFFSPKPLPSAKIAQETIVQSPDILEINDTYLDIGQ--NQGKAWQVQMVNTIIGFGVIVILLISILLAYRDLDAYGSFLTAFIQISIEDWMPMT--GWSSIIQTSFEFARQRPIRLNRQRREVCYYSD-TTGNSMVTHFTFGLAIPTSDGKDYWILRRPIASVTDGQRMW-------ETMRMYMDEPLTRR 247
8 -4.590IDP91613 gene: ECs3487; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36910 [Escherichia coli O157:H7 str. Sakai]  ali follow..  16  2...........PKISSVVSSCYHLFSEHQQLSNETTNPVSRRIVHKEYGISLKSVPVWLATAKTPLALLNGRHTRSHSFIIAGTP.................................................................................................................................................... 77
9 -4.430IDP90590 lipoprotein, NLPA family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0770c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  51LIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKIVLVPMAIYSNSIKDIKDIPNGAKIAIPNDATN------ESRALDLLAKANLIEFKSQSTLKTPIDISKNP----KKLKFIELKAAQLPRA-LNDTDLAIITTNYALGAGLN--------PLKDGIFMEDKDSLYAIVLATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSV................ 254
10 -4.420IDP90855 gene: rnc; ribonuclease III [Vibrio cholerae O1 biovar eltor str. N16961] VC2461 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  27.........THRSANGKHNERLEFLGD------SILSFVIADELYRRFKVNEGDMSRMRATLVRGNTLAEGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIY------------------LDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTR----LQEFLQGRRKPLPVYTVTNIKGEAHNQEVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQLTN.. 224

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.