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Query: IDP06515 protein of hypothetical function DUF552 [Enterococcus faecium DO] AFK58423 [Enterococcus faecium DO], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPLLNRGAIANFFGLADEEEYEYQDYPETTKKAVQPTKKNTTQNQSTHSVSAANTHEKQKTATSRPVTHESIQPAEKKKVIELHQSPTKTVAKERTASRTSTQPKANLAGKITVMEPRAYSEAMAIAKRIIAGEATLVNFHLVEEKQARRIVDFLTGTVYALDGDIKRVGDEIFLCTPTGMEIDSSTAQSFADANLFDLLast
1 -68.000IDP06515 protein of hypothetical function DUF552 [Enterococcus faecium DO] AFK58423 [Enterococcus faecium DO]  ali  100  1MPLLNRGAIANFFGLADEEEYEYQDYPETTKKAVQPTKKNTTQNQSTHSVSAANTHEKQKTATSRPVTHESIQPAEKKKVIELHQSPTKTVAKERTASRTSTQPKANLAGKITVMEPRAYSEAMAIAKRIIAGEATLVNFHLVEEKQARRIVDFLTGTVYALDGDIKRVGDEIFLCTPTGMEIDSSTAQSFADANLFDL 199
2 -7.400IDP02342 putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0737 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  16  30..............................................................................................................KFTHGTSGTIHTSGNTVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNGALNRGNNNIFLVNPMGVLIGKTGTITAGK...... 123
3 -7.240IDP00618 drug transporter, putative SACOL2348 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  127.....................................................................................................................ANIDEKD--IKDVEVGKDVDVTIDGQKASIKGKVDSIATAASFSLDGNYTKVSQVI----PVKITLESEPSKQVV....... 203
4 -7.200IDP95204 gene: wahC; WahC [Acinetobacter baumannii] AHB32284 [Acinetobacter baumannii]  ali follow..  2...........................................................................................................SINNVCVLLS-TMDNKIPLFLKKNSGVAVVINQTKDLDFVGFNNIVFHNGLSKSRNRAILLANSKYCCIADDDIYYVDDYKEKIIK...... 90
5 -7.010IDP02077 putative type III secretion apparatus protein [Yersinia pestis CO92] YPO0271 [Yersinia pestis CO92]  ali follow..  14  4...................................................................................................................HMSSYHENAIIVHLATELLWLVLLLSL--------VVASTVGLVISLVQALTQIQDQTLQFLIKLLAV................ 66
6 -6.230IDP00502 putative hemolysin YPO2045 [Yersinia pestis CO92]  ali follow..  16  36.......................................................................................AGNTYMRGNEHIPSVYNNPDGVSVINIAPPSEYME--HV-----NEHGVVFN-LNLRGSPARVILNEVVGP--VLAGHQDIVGIDYILANANGISCQG.............. 152
7 -6.210IDP06234 glycosyl transferase family protein [Streptococcus pneumoniae TIGR4] NP_344649 [Streptococcus pneumoniae TIGR4]  ali follow..  28.................................................................................................EDLKNQTYPKEDIEILFINAMSTDGTTAIIQQFIKEDTEFNSIRLYNNPKK--------NQASGFNLGVKHSVGDLILKIDAHSKVTETFVMNNVA...... 115
8 -6.190IDP95198 gene: wagK; WagK [Acinetobacter baumannii] AHB32695 [Acinetobacter baumannii]  ali follow..  15  2...........................................................................................................NNNKIALV---VYGKALEDAMTIQS-HLLIVNNGPAVIDENSAVLTSLAPLSWIYNDFIQQYDADYYVLFDDDTEINIEYQNMLFTAQDIDI 115
9 -6.070IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  893................GTIELYLPSGEVIKKNMADFTGEAPQGNGENKPSENGKVSTGTVENQPTENKPADSLPEAPNEKPVKPENSTDNGMLNPEGNVGSDPMLDPALEEAPAVDPVQEKLEKFTASYGLGLDSVIFNMDGTGEVIKKNLSDLIA........................................... 1039
10 -5.650IDP05721 hypothetical protein BA_2686 [Bacillus anthracis str. Ames] BA_2686 [Bacillus anthracis str. Ames]  ali follow..  11  40........................................................................................................................................VEDFKGKNDTNKQSAINKAEKTVLLDDKKY-KITSPIVV--KQGVKLLFGYGTQFVVEG.... 100

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24