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Query: IDP06520 gene: ebpCfm; pilus subunit protein EbpCfm (Fms9) [Enterococcus faecium DO] AFK59016 [Enterococcus faecium DO], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNHKKINVMLGVLFLILPLLTNSFGAKKVFAEETAAQVILHKKKMTDLPDPLIQNSGKEMSEFDQYQGLADISFSVYNVTQEFYAQRDKGASVDAAKQAVQSLTPGTPVASGTTDADGNVTLSLPKKQNGKDAVYTIKEEPKDGVSAAANMVLAFPVYEMIKQADGSYKYGTEELDTIHLYPKNTVGNDGTLKVTKIGTAENEALNGAEFIISKEEGTPSVKKYIQSVTDGLYTWTTDQTKAKHFITGHSYDIGNNDFAEASIEKGQLIVNHLEVGKYNLEEVKAPDNAEMIEKQTITPFEILANSQTPVEKTIKNDTSKVDKTTPQLNGKDVAIGEKIQYEISVNIPLGIADKEGTQNKYTTFKLIDTHDAALTFDNDSSGTYAYALYDGNKEIDPVNYSVTEQTDGFTVSVDPNYIPSLTPGGTLKFVYYMHLNEKADPTKGFSNQANVDNGHTNDQTPPSVDVVTGGKRFVKVDGDVTSDQTLAGAEFVVRDQDSDTAKYLSIDPSTKAVSWVSAKESATVFTTTSNGLIDVTGLKYGTYYLEETKAPEKYVPLTNRVAFTIDEQSYVTAGQLISPEKIPNKHKGTLPSTGGKGIYVYIGAGVVLLLIAGLYFARRKHSQILast
1 -134.000IDP06520 gene: ebpCfm; pilus subunit protein EbpCfm (Fms9) [Enterococcus faecium DO] AFK59016 [Enterococcus faecium DO]  ali  100  1MKNHKKINVMLGVLFLILPLLTNSFGAKKVFAEETAAQVILHKKKMTDLPDPLIQNSGKEMSEFDQYQGLADISFSVYNVTQEFYAQRDKGASVDAAKQAVQSLTPGTPVASGTTDADGNVTLSLPKKQNGKDAVYTIKEEPKDGVSAAANMVLAFPVYEMIKQADGSYKYGTEELDTIHLYPKNTVGNDGTLKVTKIGTAENEALNGAEFIISKEEGTPSVKKYIQSVTDGLYTWTTDQTKAKHFITGHSYDIGNNDFAEASIEKGQLIVNHLEVGKYNLEEVKAPDNAEMIEKQTITPFEILANSQTPVEKTIKNDTSKVDKTTPQLNGKDVAIGEKIQYEISVNIPLGIADKEGTQNKYTTFKLIDTHDAALTFDNDSSGTYAYALYDGNKEIDPVNYSVTEQTDGFTVSVDPNYIPSLTPGGTLKFVYYMHLNEKADPTKGFSNQANVDNGHTNDQTPPSVDVVTGGKRFVKVDGDVTSDQTLAGAEFVVRDQDSDTAKYLSIDPSTKAVSWVSAKESATVFTTTSNGLIDVTGLKYGTYYLEETKAPEKYVPLTNRVAFTIDEQSYVTAGQLISPEKIPNKHKGTLPSTGGKGIYVYIGAGVVLLLIAGLYFARRKHSQI 625
2 -88.100IDP06539 gene: fms13; LPXTG family cell surface protein Fms13 [Enterococcus faecium DO] AFK58158 [Enterococcus faecium DO]  ali follow..  20  1MNKKMIVTGMSVLLLVTAGINGKLVKAEEVAQKPSEVTITLHKKGFSSVPEER-PNSGLVSTD-FGEENIPGVDFDLFDVTEVYYDLIRDNPLTPEREDGLNSAERLTSIDKQTTNEAGEAVFSTEEAPSSRDKVYLFLETYSPAHISRIASPMVVMMPVMMPDVWDGSTWKDTYNTDVHLYPKNEIREADKQMNVEESDLR-----------------------------------------------------------------------------------------------------------------QVTIINEAGEQETISYIDLERGKTASYTITAPIPYFIDSVLENGAVIKNYKITDTPTVGLTYYDQEIEV----RAGETILTKGQDYIVEVVSNGFVVTILTEENGADARGGDLTITYNLKVSTELEADDFHNNTAVIEIGRNDEGVEPPEKVTTGGRKFEKYDAS--SSELLKDARFELWNEDRSEYAIFYKGESGADRIEWATSGQATEFVADGNGYFEVQGLDYGTYQMKETMAPEGYVLPTGEAAFTEFIISYGSYNEEIQPERVPNMKRGSLPATGGNGLLAFLLIGISLMIGAYSWYRKSKMKEV 565
3 -45.500IDP06525 gene: fms17; LPXTG family cell surface protein Fms17 [Enterococcus faecium DO] AFK58157 [Enterococcus faecium DO]  ali follow..  17  1MKKLLCLMLQLLVLLPLAAVLLPH-AMSAEESGEDVVEFVLHKRMIRDIDYNDHENDGLAISE-SQTVPLNGATFAIYDMTDYYHEKKAAENMTTEERLVQIGTSVTTGKDTVGGLGDGIARIKAPKKNQDRDAVYLIFEESIDPEVGLDVDIDQTAIPIAAILPIYHPTESTEELQEIHIYPKNVGYLRDPYFF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYGRQRGTTEKGKPLEGAVFALYQMIEGGKYYLDMAPANDADNDPLNDKNVSKFISDKEGLVTTGQLPSGTYYFEELKGVEGYEMDEASKRIEVIIPEFWVDAKGQPQYVVVNGKWSVFPQTNEARTLISLL-GILLLLGAVLLIKKERGEK. 435
4 -40.800IDP05077 hypothetical protein lmo1115 [Listeria monocytogenes EGD-e] lmo1115 [Listeria monocytogenes EGD-e]  ali follow..  12  345............................TFDNKEQLGIATLTKAGEEAKEIEVTESE-DVHTFKYNANVVAGVTYRIEATQDI------------HSVDGTLKAKKGDTVATVTTDEKGQWHSP-----NLYLGEYQAVEVSAPAGYILDTRPIPFSLTYAGQEVELASTAIKATNEFQT-LRLFKDEESILSWNNNQPEIEVIQGQEKVFGVFTREAQALT-------------------------DEVHVPANALLGYQTVSDGVASFELKLPQGKYYLKELEAGTSHVLNDTEYDFKFTAENNNATYPIYIYQDTVAVGNETMLKIARTPII--KKLNEQAIFDKESGVEFNYDGLGTGAIFTLENE--------DNEVIQEVTIDKDGQGNFKNIPV-----GTFYLKEKSASSTHYLMSEKVIRIESTKDGIKAFDEDDKLLGETSSTDEEPTILLEIENDLKKGTAELTKKDVS--TGELLPNTGIRILDEEKNT---------------------IAEGRTDDKGIYTFEKLPAGKYYFQEYDAPTGYQLDDTPMLFEITENGE------VVKCEMTNNK-TSLPQTGDTTNITIFALGMLLSVSTLGVLYFRRKKA. 870
5 -40.500IDP05655 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0159 [Listeria monocytogenes EGD-e]  ali follow..  15  1MNFLKKVGLAFLSILIVASTIFQTTVVKAATSYGSQNTVEL------------LDKDGVPQTDFGYYDNMAGDTMDFLALATDLAFDVKDSKGQVVGTATVKKATNQSDYVEKHSDVKGELDFPVSPTETLFKYGWVDASNPSLIHVNYAKVNIPNAVFTDIIGAKQTLNFDSIKAFHGTYSADRVFTAGAPISSTNFSATSDGAGTDFVTKQTSTWTPASGGGGEGGGTTGSVTLTKEDAKTKATLEGAEFKLVDSKGTVTTNASGQLSIADLKFDTYQLIETKAPTGYKLDTTPVEFTIGENNQ---AITVTKENTLNTGSVELTKLDAATKATLAGATFELQDKKTDENGVLKVTDLVPGSYQFVETSAPT--YKLDNSPVSFEVIAGETDQVVKVTKENTLEVGSVELTKLDSATKATLAGATFELSYQFVETSAPTGYKLDNSPVSFEVVAGETDQTKENTLEVGSVELTKLDSA--TKATLAGATFELQDKEGNTL--------------------QTGLTTDENGVLKVTDLVPGTYQFVETKAPIGYELDTTPVSFEIVAGETDPIVKVTKEKTTPIRITQSLPKTGDTNSFAGLGVILIALSLSGLLL--KRK... 793
6 -39.500IDP06530 surface protein [Enterococcus faecium DO] AFK59398 [Enterococcus faecium DO]  ali follow..  25  6........................................................................................................................................................................................................................................................................................................................................................................ENTGVALYDPAESALTFTTDTEGSISVNGLIDGNYT----LVETKAPDGYQLTNPQKETTFIVKNGKLQQTTGIIHGADEANLGNPNGVVNRENTTTDNTITVENVQNYGDFHFIKQDVN--TQEKLADAEFSILRAKDPTVKLMKKIANAWSDEVTGSDWEEVKLISDSEGKFSIEGLKQGAYCLQETKAPEGYALPKNEAAYTEFTVD--DDPTTSDETTIDNQPKGILPSTGGMGIIVFILVGTALVGGAVIYFKKRHQET. 269
7 -36.800IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  12  1MKKGNRKALLISLIMILSMVVSTIYPTVSYASELGENS--------QSGSTNSSTGEEKESDNKKPEQTPEK------DKATDNKKPEQTPEEEKPTDNKKPEQTPEEDKSTDNKKPEQTPEGEKPIDNKKPEQI---EEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLEDENLLKVLEEELNEENEDYGFVVKINNNTIETESMKKISFNLTYTPTSKGIQAGDSITFKVPDVFNKVNLDYTSECFDKTESNGEYTLTFRELPNGQSVMQGKIGLEAYVKKVDEDTNAKIHIETTGKIESGSGDIDVEIKPGDKTDVPDAKGTLKKLVE-NKDINYSIQV---------NEKQEELKDIILYDELPEGLTLINGSVSVVTSDGKE------VSDFNIEQSKNSISVNFGN--------DKSYTVKYKARISDNAKHGNKYKNVARIESDGKKIQEDDETTKQGYAFEAKKVDAL--DKNVLSGAKFNLEDAFGNIV--------------------VKDLVSDEDGIIQSSVKNPGTYYLVEIMAPRGYEKLKDKIKVEIGNKDIGRIVDIGNIENIRLVNPPVPPKTGDSTTIIGEILLVIGAIVGLIVLRRNKNTN. 972
8 -35.400IDP05223 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0160 [Listeria monocytogenes EGD-e]  ali follow..  13  1MMSNKKFGLAFLSVILLVNVIFQTNFVKAATNYGSDKTVEL------------LDADGNPQTDFGYYDSIK-VHYT-WEIPNSTNVKEGDTMEFV------PELKIVTDLDFSLKDHDGNTVGHVIAKKSTGQVVITFTDFVEKNSNISGYLDFWTNWDKSLVEGNENVPVENGTTETIDVGVGGKNQIDPDESLYKYGWADAENPELIQWVVQNIQNAVYEDFIGPKQVVDFNSIKAFHGEFDPDDNFTPGAEVPSSAITQTTDGFKVDLGNLTDSVKISYYTTSTDNGASPNYTNKGQLTGDNFIKQEIEVATPTSGGGGGGEGTTGSVELTKTDD---------------SSQKNPLEGAEFKLVNG-----------------------------------AGATVQTGLKTNADGKLAISNLKYDTYQLIETKAPQGYVLDASPVKFTIDDTHQSLFVSKENTAIKGSVSLEKVDRDTKSLLADAEFELQDKDGNTL--------------------KTNLKTDQKGKLTVADLLPGEYQFVETKAPTGYILDTTPLKFKISTEALN------VTVTKENTKQTALPKTGDSPLVNGWGLLLVAISASGLIALRRK.... 565
9 -33.000IDP06516 von Willebrand factor, type A [Enterococcus faecium DO] EAN10603 [Enterococcus faecium DO]  ali follow..  11  678........................FPSSSIRYEHKGRNFQVSKK--------------------QNGEPLAGVEFALYDQNP--------------------ESGEAEPIETSKTTTDGIAIFELGDETGAVSDIFWIREIAGPPRYQLVDETYQFQIKKYAANEDEMLGHYELVDEYTSGSRVGGPEGKDPNSYYEGEYHKLSVVQEPNIEGTEYDELYVKLEMRNEFKPIHMNINKLIEGSNMPINGAEFELYETDGNGLEIGYPVAK-ETTNYAEYKIIESQNPEGFKEPDENDTWILRLYDNAIGTIQLKQTGEENWQYLTYTTDEEDRLWVAFTAYNTFDYEIRVRKLDHEGHTLDGAGFDIRKVGDSSFP-LYRAYTGNPLEPEESKRLPGIGYFYSRAVGVEKYVDLNYDQPLHLSIG-----EYEVSESVAPNGYRLSDQVFQFALNEEGKFIIEEDELAPIDLELLKIDSM--NSRRLEGAEFSIEKQNSAGE--------------YEIIEGGLAPDPNDSSLFNASDLLEGVYRIKEVKSPDSYRKLPGYFILEISYREEPETNRIRLQLSVGNDPENPLPATGGSGRLFYILLAAFFMALAGAAYVRQSKKE. 1342
10 -32.200IDP05452 collagen adhesion protein, C-terminal [Bacillus anthracis str. Sterne] BAS5207 [Bacillus anthracis str. Sterne]  ali follow..  17  327............................TATNSLTKGAVELSKV------------------DDIDGSTLKDAVFKIVDMNG------------------------NDVRTDLTTNKDGKISVS-----DLRPGDYQFVETKAPTHYDLNQTPINFTVEKSQTATASVTAKNSLTKGAVEL--------------TKVDDIDGTTLEGAIFKIVDQNG------------------------------------NDVRTDLTTDKDGKISVSDLRPGDYQFVETKAPTHYDLNQTPINFTVEKSQTATASVTATNSLTKGAVELTKVDDIDGATLEG--AVFKIVDMTTDKDGKISVSDLRPGDYQFIETAPKHYDLNQNP---INFTVEKSQTATASVTATNSLTKGAVELMKVDDIDGTTLEGAIFKIDYQFIETKAPTGYDLNAKPIPFTITKGQSQVTSLNSLTTGSMELTKVDID--HNGTLEGAIFNILDQDGKVV--------------------REGLKTDGHGKLIVNDLKPGNYQLVETKAPEGYQLDASPISFTIEKAQASPLQITVSNKKVESS....................................... 801
11 -32.000IDP05436 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2085 [Listeria monocytogenes EGD-e]  ali follow..  12  1............................................................MQRKLIGSFFILMVLLIIG-------------------------STSEKVQASPTSSNGWQLKW-----AIKNNDFEDVDITDYGQNAGTTNVWMVNQAGVDAWGTTNPTGNIEVWQNGNGYNVPAFSGNSDGIGPVYQDIRTIPGSNLTWKFSHRGRTGVD------------------------------TADLLIGSPESQTEVSRVSNGETWGSFEGNYTVPAGQTITRLTFNPISTANGSLTSGNFLDDVQNGDGIQQDSEEPAPGVKVDLLTKDGTFKESATTNNIGSYLFTDVLPGDYQVKFSLPNNDFIFSKANQKVEIQKLSGDKALSGAVYAIKDNSQSEVAKITTNQNGTGTAEGLPPGNYTATEVTAPLGYQKNTTPKKFTITYGDTNPVKQNAEKTGSITIFKQD--EANKKGLANAVFDVKSIDGTT---------------------LKKVTTNSKGYALAENLQPGTYVITEVTAPPGYEKSANEIRVTIPFNPQKTINITFSDNKIMVPLKPTLPQTGDSSSSSTIFTGLLIVVASGLFVYRR..... 561
12 -30.800IDP05697 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2178 [Listeria monocytogenes EGD-e]  ali follow..  15  988.........................TIGSGSGTATIGSLEITK-----------------VDKKDNSKKLTGAKFQLYTLEG------------------------DKAGQEATTDSDGKIVMD-----GLQSGKYKLVETEAPTGYTISDEYKDGKEITVTADIATSVTIENT-------------EQTGSVVLLKEDSATKDAIAGAEFELQNADGTKVA------------------------------------DNLVSNADGKIEVTDLAPGDYQFVETKAPTGYVLDGAPTKFTVEFNQEAAVIVTKENTAKTGSVVLTKEDSVSKATLSGAEFELQKDNLTTNADGKLEVTDLAPGDYKFVETKATGYELDATP---VTFTIEFNQATAVNVTKENVAKTGSVVLTKLDSKSRSNLAGAEFELDYQLVETKAPTGYDLDATPVEFTIEFNQKAPTKTNTMSTGSVVLTKTDGE--TKALLANATFKLVDEDNNV---------------------TENLTTDASGKLEITNLAPGDYQLIETKAPAGYELDTVPVDVKITFDQKETLQVTKTNLAKKPTVKTSLPSTGDESPYGIIFTGLFASFMGLFLLRKSKKIN. 1598
13 -30.700IDP01796 cell wall surface anchor family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5258 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  1MKRKGKWFSFLSALIILLGIAMPQVKAEVMNRETYKMDWSYSDAVYRVLLNGYPQKGPSELGVATTEEAHYATQLAVWAVQTNAVSGSYTILPENAPKGLRIVNENGEEKSTLSINEKFKILLP----KDTSSGNFKMKVKSTLTNLQAIAFKGSEKVQNTTVLLQRNSEKISTDLVV--------NWESVGSLKIMKLGEKKEVLKGAVFEVSN---------------------------------------ENFKQNVTTSDKGIAELGNLPIGIYSVKEIQAPAGYVLDRSVKKIEVKTGETAVLELKNENVKGELEITKVDVADGNTKL---PNAEFTIYVKGKTDEKGVAKFKLPYGKYTYKETIAP-------------------------NGYVINEETFAFEIK---------ENGEIIKHIVQ-------------------------------DKKVEGELEITKVDVA-DGNTKLPNAEFTIYNEQGK---------------------EVVKGKTNEQGIAKFK-LPYGKYTYKETIAPNGYVINEEKFGFEIKENGEIIKHIVKNKKQPSTHNEVRLPATGGVSNQFTFVLGISFIIAGAYVLRMKNRKEM 627
14 -29.900IDP05088 LPXTG-motif cell wall anchor domain protein [Bacillus anthracis str. Ames] BA_0871 [Bacillus anthracis str. Ames]  ali follow..  13  338............................WKKPAAKKGNLQIKK-----------------VDENNENIVLKDAKFDVID-------------------------KENNVVDTVTTNEKGIAEVK-----DLPFGDYFVKEISAPEGYIKIDAPVKVTIDNTNIIEFVIKNTKKLENGQLKL--------------LKKDSESGQLLPGAKFDVIDKDGKVVE-------------------------------------TIVTDDKGEALSKQLPVGSYTLKEVEAPKGYELSSSSVSVDVEANKVVTVDVVNKKIPEKVTGQFEVVKVDANDKT--SGAEFEVYKDKTGESGKVMSPKLPLGEYTVKETKAAGYKLSDKSLQIIKMDDKDQTKRLAGAEFTLDVKGNVVKEGITTDKSGTVKVDGLVPGEYTLEETKAPEGYKALEVTIEVNVVANEVVKQDVKEEITGQLEITKVDAN-DINKKLAGAVFEIWKDGT----------------------KIDTLTSDENGKAISKELDPGDYILKEVQAPEGYELSDKEIEFTISNQKFEPGEETEKPGEETEKPGQQLPATGHDMNYLPFIGFALVLLGIRLRFMTKNN... 969
15 -29.900IDP06545 gene: fms18; LPXTG family cell surface protein Fms18 [Enterococcus faecium DO] AFK59452 [Enterococcus faecium DO]  ali follow..  16  272.............................KIDVETEGSLKIKKV------------------DKETGNVVPGTVFHLDF-------------------------GKTLPAKDVTTDKEGIATLD-------HGAKVTITEKSVPAPYTIDTTPITATIKSGETISVTSKNTREKGQIILNK---------MGVETGTDLWNDKYSLAGNTFAIRKDSPT-----------------------------------GEIVQEMTTDEKGHAEANALELGTYYVTETKASNGFVNTFKPVKVELNYVNQTVALVTSNVKGQNQEITGETT----------------TKEDKDTGNETQGKAEFKGAEYTLFTAKD---------------GQAVKWSEAFKPELVKGTKASDETVTLTLDEKNQVAVKHLAINEYYWQETKAPEGYTLDETKYPVSIKKVDDNETAKEQVIRFGFDFFKFAGSAAAETGFNDLTFKVSPLEGTSEITGA----------EDEAITAYNEQLGFDGYGKFENLPYGDYLLEEVEAPEGFQKITPLEIRSTFKENKADYTKSEYIFTITEKGQKQPIKT............................... 721
16 -29.600IDP05567 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2576 [Listeria monocytogenes EGD-e]  ali follow..  16  973..........................MNEKMPIKETGEVHLVKT------------------DKATGATLAGAEFSLYDKSG------------------------AELQNGLTTDENGELTIH-----NLDLGSYYLKETKAPEGYKLSEKTWEFSVESGQVDAIEIQAENEKDLGEAVL--------------TKVDSETNAKLSGAKFNLLNDSGEVIQ------------------------------------TNLVSDENGEIRVQNLEPGDYAFQETEAPTNYDLATNTWPFTIVAGQTSATMVTAENNKTGKPDVDTGEKQDSATGETLEGAVFDLSNLTTDANGEITVTNLAPGKYSFKETKAEGYELATDVWEFTIAPNQPEKITITAENTKLAPIPGSVKIIKQDSENGVRLAGAEFSLNYRIQETKAPDGYQLESTPWQFEIVANDTSQVTPDVAETGAVRLIKTDSE--TGTRLSGAVFSLLDESGKVI--------------------QANLTTDENGEIFIDGLTPGNYSLKETKAPDGYELAEQPWNFQIVKGQVDAVIIKAIEIPVRKTDTLALPQTGDKTSFPRVILGGSAVLMSLLYLRKKSS... 1530
17 -29.200IDP05502 putative collagen-binding surface protein [Clostridium difficile 630] CD0386 [Peptoclostridium difficile 630]  ali follow..  10  1MKKMKRLCTGFLALATVVTALPTTPVHAESKQYWTESAERVGIIEKVMNDGSIGSTNGYKTRTDASSRMSADQISDVALSLEYVKQYGEAHKELNYKQVRLSVHLGWQCDNVRASYDEIPKATQ-----DEVFAGAKAFVKENKGRYECGGYIYSGEGQELGQFWAKLNVGNAK--------------QKTSSNASITDGNGNYSIAGATYGVFADKDC-----------------------------------TKQLATLTTNENGNTDVVEVTTGTVYIRELSAPAGYKVDKTVYSLKVEAGKTATLKVSDTPKVTDTLIELFKIDMETQKDN--AGAEFTWKYYNKENLPAEATRTWVTKTIAETDSDGTTHYITKLADAYKVSGDSFYMQDGKAV--------GTLTVEETKAPNGYLLDGAYMQAGDKSE-QIKGLYVTQITEDGDLAVLSGSNQFSVSDKVIRGGVKIQKRDLETQGSATLKDTAFDIISLNDNVVLV--------EGKLYKKNEVVKTIHTDIEGVASTSLLPYGKFRIVESEAPNGYLTDGAKPIDFAITENGKIVDLTDEAHSIYNQ....................................... 569
18 -28.000IDP05538 putative collagen-binding surface protein [Clostridium difficile 630] CD3392 [Peptoclostridium difficile 630]  ali follow..  9  1MKKIKRLCTGFLAFATVVTALP------STPVHAESKQYWTESAERVGIIEKVMNDGSIGSTFNEGMMKVEGTAYCIYKTRADASSRMSADQISDVALSRLSVHLGWQCDNVRASYDEIPKA-----TQDEVFAGAKAFVKENKGRYECGGYIYSGEGQELGQFWAKLNVGNAK--------------QKTSSNTSITDGNGNYSIAGATYGVFSDKDC-----------------------------------TKQLATLTTDKNGNTDVIEVKAGTVYIKELSAPAGYKVDKTIYPLTIKAGETATLKVSDTPKVTDTLVELFKIDMETQKDNPQGNAEFTWKYYNKDNLPAEATRTWVTKTIAETDSDGTTHYITKLADAYKVSGDSFYMQDGKAV--------GTLTVEETKAPNGYLLDGAYMQAGDKSEQIKGLYLTQITEDGDLAVLTGSNQFSVSD-KVIRGGVKIQKRDLETGDTKTLKDTAFDIISLNDNAVLVEGKL--------YKKNEVVKTIHTDLEGSTSADLLPYGKFRIVESEAPDGYLTDGAKPIDFAITENGKIVDLTDEAHSIYNQ....................................... 569
19 -18.100IDP06529 gene: acm; collagen-binding MSCRAMM Acm (Fms8) [Enterococcus faecium DO] AFK59905 [Enterococcus faecium DO]  ali follow..  9  1MKKCRNI---ILSMLFIITNITSLIPVHVYADAGRDISSNVTSLTVDPTNITDGGNIKVKFSFDEKKQNIPGDYLWI-NWPSEGNIRGEGFQKEIPLMIENKNVGT-NENIKNLDSVEGWGQFEIQARNVTDEQPVKISDEIQSGQRLDPSTFEINQIHLGEQKVYRGEEGIQQFLQDFPSATFNFSVTDNYIEITIPKNFVNLRKIMVSYKTIIENPEQINFENHSEAWFKEFNKPAVDGESFNHTVKNQPIQGQSSILLTSNEQGEASIKGLQVGDYVVKEKEAPNWIDFDPLSSNELKFSINENDTEGVSLPIYNKKK---------------------VTNITATKIWNGGTTPRPSIYFKLFRASTNNWEPVPDAETKR--------------------LDNGITSVTWEDIQQYDDSGNE---YTF--KVQEVDQNGNDYVPSGYQKIENGLVVTNENKEVISVSGQKTWEDNENQDGKRPTTITVNLLADGQPI--------------------QHKEVSEKDDWRYRFTNLRDGIYTVTEDNVPDGYNIKNEKIRNLFSQKLQIFAHTGESSEQ-TNKSKSILPKTSSKKSSFAVIIGLLIVTICAGIFL-QKYKKV 721
20 -17.500IDP91037 gene: sdrD; Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein [Staphylococcus aureus subsp. aureus Mu3] SAHV_0560 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  13  571.......................................KIGNYVWEDTNKNGVQELGE--------KGVGNVTVTVFDNNT------------------------NTKVGEAVTKEDGSYLIP-----NLPNGDYRVEFSNLPKGYEVTPSKQGNNEELDSNGLSSVITVNGKDNLSADLGIYKPKYN-EDTNKNGIQDQDEKGISGVTVTLKDENG-------------------------------------NVLKTVTTDADGKYKFTDLDNGNYKVEFT-TPEGYTPTTVTSGSDIEKDSNGLTTTGVINGADNMTLDSG----KTPKYNLGNYV--------------------------WEDTNKDGKQ-DSTEKGISGVTVTLKNENGEVLQTTKTDKDGKYQFT-------GLENG-----TYKVEFETDEGIDSNGTSTTGVIKDKDNDTIDSGFYKPTYNLG---EDTNKNDEKGISGVTVTLKDENDKV---------------------LKTVTTDENGKYQFTDLNNGTYKVEFE-TPSGYT-LGDYVWYDSNKDGKQDSTEK-VKVILLNEKGEVIGTTDENGKYRFLDSGKYKV............... 1075
21 -16.500IDP06509 gene: fms20; LPXTG family cell surface protein Fms20 [Enterococcus faecium DO] AFK60478 [Enterococcus faecium DO]  ali follow..  13  350...........................................................................................................................................................................................................................................................................................................................QPEKTGVDKNGNNVNDKMLQVGDTIQYRIKQKVNRLGVDLLA---VYDRFELIDNLPKEVNYVDAHVE-----SGTNKKFDVSGEVTYDKTKHQVKYAAKADTLKNRMNGETYELVINVKVNELANQNSVAKNQGTSII-NKVEKDTNIITVYFPKIPVKEVQQNGKDVNGRNDGKKGTPTAPGSEVQYLVTQKWHTKGVDAASDHYKQFSIQDP------ARLTYKEGSAQVIDKSKGYDSNSRTLKWEASADLDGREIQLIFTAKTPLQSEKNIDNQA.............................. 637
22 -16.400IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  10  704....................LVATPANQSGTFGSTDIQVNVYQAVAYKLTSTYKDQQGNDLALPKVDTK--QDGYTTYTLVAAPTNQTGTFGASDVTVNYVYKANDYTLTSTYKDAQGKELKTPVIDSQKYHIN-YTLVAAPANQSGTFGAANVTVNYVYKADDYTLTSTYKDANGKEL------KAPVVDSKTYHTKDNYSTSAATIPGYTLVAAPANQTGTFNTSNVTVNYFYKANEYTLTSTFKNVQGTELKPAIVKKGFIIKDGYSTSGVTIPGYTLVATPSNKKGTFGASNVTVNYVYKANGYALITTYKDTQGKDLKPLAI--DTKTYNINDPYTYTLT-TTPANEKGVFGASDETVNYVYKANDYT-TTYKDANGKELQAPKVDAKTYHIQDTYKTTAAVPGYTLVAIPKNDQGTFGANNVTVNYVYQTNDY---------TLTATFKDAQGNELKATEVDAQKYHI---DTYTSKAAVIPG--YTLEKTPTNETGTFNASDIQVNYVYKANDYQLTSTFKDQQGN-LIPG-----YSLVAAPKQIGYKKDAIIKPITPAKPTILTIKTPASKVIKTKVVKQTLPKTGDDDAGLLNLLRLIGLVLILGVFLAVGSKK. 1346
23 -15.600IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  12  644..............................................................................................................................................................................................................................................................DGTTKSVRTDANGHYEFGGLKDGETYTVKFETPTGYLPTKVNGTTDGEKDSNGSSVTVKINGKDDMSLD------KEPKYNLGDYV--------------------------WEDTNKDGIQ-DANEPGIKDVKVTLKDSTGKVIGTTTTDASGKYKFT-------DLDNG-----NYTVEFETPAGYTPTVKNTTADDKDSNGLTTTKTPKYSLGDYVWYDSNKDGSTEKGIKDVTVTLQNEKGEV---------------------IGTTKTDENGKYRFDNLDSGKYKVIFE-KPAGLTQTVT------TTEDDKDADGGEVDVTITDHDDFTLDEEDTSDSDSD....................... 946
24 -14.500IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  13  649...................................................................................................................................................................................................................................................................SVRTDANGHYEFGGLKDGETYTVKFETPTGYLPTKVNGTTDGEKDSNGSSVTVKINGKDDMSLDT-----KEPKYNLGDYV--------------------------WEDTNKDGIQ-DANEPGIKDVKVTLKDSTGKVIGTTTTDASGKYKFT-------DLDNG-----NYTVEFETPAGYTPTVKNTTADDKDSNGLTTTKTPKYSLGDYVWYDSNKDGSTEKGIKDVTVTLQNEKGEV---------------------IGTTKTDENGKYRFDNLDSGKYKV-IFEKPAGLTQTVTN-----TTEDDKDADGGEVDVTITDHDDFTL.................................. 931
25 -13.600IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  12  140...........................................................................................................................................................................................................................................................................................................................................................................QVNYVD--ETNQTLATSDTLSGKLGETYTTSPKAIDGYQVKETPTNATGTYTTN-------TETIQINYVYEKTAVEG-----ANVSVEYINEATNESIAPTETLSGKIG----TTFQAEVKEIDG--YELSQVPSNQSGTYTDQTQSVIFKYDEVAKDVTVTYKDTKGN-ILKG-DIGSTFETEAKSFKGYKLTKTPVEYVYSKDDAVITPPKTVNQTGKTSTALQLPKTGDSENNLPLIIGVSLLISGVYIFTTRRKRV. 438
26 -13.600IDP91912 hypothetical protein SpneCM_07064 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007064 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  342......................................................................................................................................................................................................................................................................................................................................................................................................KDGKPINGKFGNTTVTNGKAQISLKNSQETALSY---LPRDTHYKVEEVENSRTGYHVTYE-EGTLSEDVQTIVTNHRLPTLSVTKK--TGAFANLLQSFKITINDAQNKPLNGSYSAIVNNQKTTLQFTNGKATVDLKKDKTIKILDLPLNRYSIEEEASSRGYQVSYDKKEGTLDANK---------SATVTNNKN-SVPETG-VLGVVLPLGGIFFIILLGHLVVNRRK... 571
27 -13.100IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  11  180..........................................................................................................................................................................................................................................................................................................................................................................................................................VVKAEETEITYSPGSDVTEEQFLTDIHASVTDNYDSTISLTSNFT----SAVNLAVSGDYSVNVQATDKAGNVSNTLNVTVHVSTPAP--------VAGANITVNHLDSNGNKIAESDTLTGVVKITG-----YTLETTPTATGFTDTPQTVDYIYKKDTVNDNTNPSTSNSVEKTTYSSLPTTGDTDQSKSSTIFGALLLLISAPLLLFKKK.. 415
28 -12.500CPX_91689_91672 Complex of C4BPA_HUMAN with ARP4_STRPY [Undefined organism]  ali follow..  11  731..........................................................................................................................................................................................................................................................................................................................................IEADKHYQEQQKKHQ-----------------QEQQQLEAEKQKLAKDSDASRQGLSRDLEASRAAKKELEAEHQKLKEEKQISDASRQGLSRDLEASREAKKKVEADLAALTAEHQKLKEDKQISDASRQGLSRDLEASREAKK------VEADLAEANSKLQALEKLNKELEEGKKLSEKEKAELQARLEAEAKALKEQLAKQAEELA----KLKGNQTPNA----------KVAPQANRSRSAMT-------QQKRTLPSTGETANPFFTAAAATVMVSAGMLALKRKEEN. 984
29 -12.000IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  11 1158..................TVTITATNEDGGVSAPKEVSVIVRKIPAPEITADKE--TYPKFDEVSEAEFLNDIHATISD---------KNVAITSNFSTDVNLNKAGDYTVTNATNEDGVKATPVEVIVHVQQGERPVITADATISYDKFANITEAKFLEDIHATSSDGQSSTVITSNFQTATNFKTAMSYTVTLNAVNEDGISAEPVAVTVTINKEPAAAL-----KADAEVSYAKNEAVTESDFFKDVHLEGTEAPSTAKATSNFDSVVDRSKTGDYTVTNATNEDGAVSTPIEVIVHIEAESAPVITANAEVKYNKHEQTDERRFLYDSEAKIDEA-TYTVTLTATN--EDGQAANPVEVSVIVSDAAAEKVNVK----------VDENGSEISAAETLTGNLDETFSIDAKSIAGYKCDATLS---VFSTVEQTVFHYKAIKPGVVTIKYEDTNGKAVDEDKQITGEVG----DDFEAEAQTVSGYSCRAIASGKITEEPQTITFTYSTATPSKKSGEITVQYVDESGKKKVTGNIDDSYSVVGDDSAKGFKYKKNTQVSKDDPKVKGKTNQPSSTDTKLKVDNNSLPATGDTNMILAVLIGFNMLIVASIFLFRKPKTN. 1777
30 -11.700IDP05371 conserved repeat domain protein [Bacillus anthracis str. Ames] BA_3601 [Bacillus anthracis str. Ames]  ali follow..  10 1389.........................TTVVTIPLPPPGEVTATK-----TVDVAAGAVGDV------------LTYTV-LISNVGIIPVADVFFQDVIPEGTTFVEGSVTIGGVQQLGLNPEIGFTVTPLLIAGGSIEITFQVTITEIPDNEVILNDADVTFTSQPNPQEPPITETILTNLVVTTINIAFVFPLKLVDKEVATVGEILTYDVLIFNFGTVPATNVQYSDVLPSSIAFEPNSVTI------------DGVLQPGFNPNNGFPLPDINPGQVTVVSVPSNGTIVNTANVTGSFVLVPGEPPVIVTGPSNTTLTTVNRGIKQVNRAATLVGDVLTYTVQIT--------NTGTVTANDVQFIDTISAGASFVPNSVTINGALQPNLNPITG--------------------GVGDIPVGETVVVTFQATVTNIPASGT-ITNVANITGSCTEPSNTTITSINRGRFSVIK---SVNKEATRLGLTYSVQVTNTGTVTATNVQPSLEFVPGSVQINGIPQVGLNPFIGFSLPDLAVGTFAVNVIAVPPSSSIMNTDMQKEVDNSIVGVGETVTYTVRILN--------TGTADAMNVQFIEAVFVPNSV........... 1982
31 -11.500IDP05461 conserved repeat domain protein [Bacillus anthracis str. Ames] BA_1618 [Bacillus anthracis str. Ames]  ali follow..  9 1538...................IIATKSVNTPNAAIGDIVTYTI-----------AVTNTGN--------IPASATVLT--DGLGPGASFIPNSVTINNVSQPGLDPSLGIHLDDISPEGTTFITFQ------------VKILAIPPSGTLTNNALVNYEYTVNPTETPAVGSTVTNTTVTP-------IVDATLVINKNASTTFATIGDTITFTS----------VVTNTGNTTANNIVFTDSIPNGTTFVPNSFKINGVTVPNTNPQNSINIGNLNANSFQVNITTLPNPNPIPNQSSLQYRFIVDINEPPVSRTVQSNKTFTQIATKTASSAFAAVGDTITYTTTLT--------NSGNTTANTPVFIDILPAELSFVPDSVQINTIPQLGFRPDTG--------------------PLDSIPVGGTITISFQAIVGSIPAINPTLNQSSTTY-TEIATSNPTLIQINEAIIQATKSVDRLFSDVAPGNLTYTV--------------------------------LLENIGNTTATNI-----IFTDP-IPNHTVFIEDSVR.............................................................. 1989
32 -11.000IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  11  541...............................................................................................................................................................................................................................................................ATSDTLNGKIDAPYQTTAKSLSGWTVKTTPNNATGVFTNSKQTVTYVYEKADGAPVTVKYVDADGNELATSDTLNGKIDAPYQTTAKSLSKTTPNNATGVFTNSKQTVTYVYEKADGAPVTVKYVDADGNELATSDTLNGKIDAPYQTTAESSGWTVKTTPNNATGVFTNSKQTVTYVYEKADG--------APVTVKYVDGDGNELATSDTLNGKID----APYQTTAKSLSG--WTVKTTPNNATGVFTNSKQTVTYVYEKADGAPVTVKVDADGN-TLNGKLDTSYAVTAKNL-SGWKLTTDAQTVTFKTPIKINENKPTASKVTTIKRQTKLPKTGDTQQDSILFGLVGTCFVLLGIYSISKKNS. 940
33 -10.800IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  15  361.......................................................................................................................................................................................................................................................................................................................................................................................................................DGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSVA------AAPVTVKYLNEEGKILTASDNLTGNVD----DPYQTKAKEFAGYTLDESKLPTNASGVFKTNAQTVTYVYKTIPASIKDSAVDSLGVVPFDEVKVDGSVDTTKAGVYPYSFAGDSVTIKVTKQSGTLKIKATHQEQPIVAGNLKLPTTGDN-SVLYSIFGFITVCLSFVLFFRLKKQK. 624
34 -9.820IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  16  90......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAQVQPKNAATKKEVAKPAVQGEKLPNT-ASNNVAMMALSACLVGIGTLFGLKRRNK.. 145
35 -9.420IDP05082 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2179 [Listeria monocytogenes EGD-e]  ali follow..  9  9....................................................................................................................................................................................................................................................SILICTLLIVSLLPFSVWADSQERDGTDVEE------ITTKEKVTQETTSNETTSEPLKGTTVNKAINAKSFPTGNYSGDFSINSQKDVIESGQTVNYNIYLKITGPNTRYQNA-------KLVINLPKNGEFNQSL----------NELKIAGATPSYNKTTRQLVYTYQT-----LNSGVVDKVILKMTTKNGYT-GTKLVVTGELSADNLSEKVTEQAETTV-TTALSND-ENSINNNPSQGGIWSF----------------------------NLNIPKKSTGSLFME--EGKKIVIEYT-LADKTKVEGQKLTWEIAAPTYLEQPTIPNFATVENKAVATTNFVTLTDSIV........................ 346
36 -9.390IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  13  556.........................................................................................................................................................................................................................................................................................................................................DLSEVDSSKLGTYEATIIAKSKSGASSDPIK--LSVKIVDTEKPIIQINNPEIIIEKGSELTEGQIIDQVGITATDNDQDLNIHMDLSKVDTSKPGS-YEVTIYTEVTITVKVPEARIGKITIQYMDSENNELAESNTITGEVG----ETYETLAKEIEG--YTLKENPANSSGVFEETRQTIQYIYVKDIINPEFPVYSEN---------------VTPELPSNNNNSVNGSRQTPSKSVKKQSKAY----SKINQMPMNLPETGDSTNLLFIFMG-VLLLAGLTLSKAKRKNQ. 832
37 -9.260IDP91950 beta-N-acetylhexosaminidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006639 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11 1020.....................................................................................................................................................................................................................................................................................................................................NRNKQAELDTLVANLKAALQGLKPAATHSGSLDENEVAA----NVETRPELITRTEEIPFEVIKKENPNLPAGQENIITAGVKGERTHYISVLTENGKTTETVLDSQVTKINQVVEVGAPVTHKGDESGLAPTTEVKPRLDIQKEEIPFTTVTRENPL---LLKGKTQVITKGVNGHRSNFYSVSTSADGKEVKTLVNSVVAQEAVTQI----VEVGT---IAEEKPK--EIPSQPAPSTAPAEESKALPQDPAPVVIEKK----LPETGTHDSAGLVVAGLMATLAAYGL--TKRKED. 1312
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.