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Query: IDP06525 gene: fms17; LPXTG family cell surface protein Fms17 [Enterococcus faecium DO] AFK58157 [Enterococcus faecium DO], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKLLCLMLQLLVLLPLAAVLLPHAMSAEESGEDVVEFVLHKRMIRDIDYNDQFEYHENDGLAISEEAGETADIISQTVPLNGATFAIYDMTDYYHEKKAAENMTPKEFVQQIAETNRNNIRQLITEERLVQIGTSVTTGKDTVGGLGDGIARIKAPKKNQDRDAVYLIFEESIDPEVGLDVDIDQTAIPIAAILPIYHPTESTEELQEIHIYPKNVGYLRDPYFFKYGRQRGTTEKGKPLEGAVFALYQMIEGGKYYLDMAPANDLKNQWIKPADNDPLNDKNVSKFISDKEGLVTTGQRFLPSGTYYFEELKGVEGYEMDEASKRIEVIIPEFWVDAKGQPQYVVVNGQEMAELESGKVPVSAYESATPRVYNETVKETTDKPKEPSGPSNPGQSGKWSVFPQTNEARTLISLLGILLLLGAVLLIKKERGEKNELast
1 -137.000IDP06525 gene: fms17; LPXTG family cell surface protein Fms17 [Enterococcus faecium DO] AFK58157 [Enterococcus faecium DO]  ali  100  1MKKLLCLMLQLLVLLPLAAVLLPHAMSAEESGEDVVEFVLHKRMIRDIDYNDQFEYHENDGLAISEEAGETADIISQTVPLNGATFAIYDMTDYYHEKKAAENMTPKEFVQQIAETNRNNIRQLITEERLVQIGTSVTTGKDTVGGLGDGIARIKAPKKNQDRDAVYLIFEESIDPEVGLDVDIDQTAIPIAAILPIYHPTESTEELQEIHIYPKNVGYLRDPYFFKYGRQRGTTEKGKPLEGAVFALYQMIEGGKYYLDMAPANDLKNQWIKPADNDPLNDKNVSKFISDKEGLVTTGQRFLPSGTYYFEELKGVEGYEMDEASKRIEVIIPEFWVDAKGQPQYVVVNGQEMAELESGKVPVSAYESATPRVYNETVKETTDKPKEPSGPSNPGQSGKWSVFPQTNEARTLISLLGILLLLGAVLLIKKERGEKNE 437
2 -50.200IDP06539 gene: fms13; LPXTG family cell surface protein Fms13 [Enterococcus faecium DO] AFK58158 [Enterococcus faecium DO]  ali follow..  16  1MNKMIVTGMSVLLLVTAGIGIFGNGKLVKAEEPSEVTITLHKKGFSSVP-----EERPNSGLVSTD---------FGEENIPGVDFDLFDVTEVYYDLIRDNPLTPEREDGL---NSAEAIEWIQKRHTESWFLKYRLTSIDKQTTNEAGEAVFS-EEAPSSRDKVYLFLETYSPAHIS------RIASPMVVMMPVMMPDWKDTYNTDVHLYPKNEIREADKQMNVEESDKYDASSSELLKDARFELWNEDRSEYAIFYKGESPLAVYE-SGADRIEWATSGQATEFVADGNGYFEVQG--LDYGTYQMKETMAPEGYVLPTGEAAFTEFIISYGSYNEEIQI------------------VGVENPGPERVPN----------------------MKRGSLPATGGNGLLAFLLGISLMIGAYSWYRKSKMKSE. 564
3 -45.500IDP06520 gene: ebpCfm; pilus subunit protein EbpCfm (Fms9) [Enterococcus faecium DO] AFK59016 [Enterococcus faecium DO]  ali follow..  17  1MKNHKKINVMLGVLFLILPLLTNSGAKKVFAEETAAQVILHKKKMTDLPDPL----IQNSGKEMSE---------DQYQGLADISFSVYNVTQEFYAQRDKGASV--------------------DAAKQAVQSLTPGTPVASGTTDADGNVTLSLPKKQNGKDAVYTIKEEPKDGVSAAANMVLAFPVYEMIKQADGSYKYGTEELDTIHLYPKNTVGNDGTLKVRFVKVDGDVTSDQTLAGAEFVVRDQDSDTAKYLSIDPSTK--------AVSWVSAKESATVFTTTSNGLIDVTG--LKYGTYYLEETKAPEKYVPLTNRVAFTIDEQSYVTAGQLISPEKIPN------------------------------------------------KHKGTLPSTGGKGIYVYIGGVVLLLIAGLYFARRKHSQ.. 624
4 -34.400IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  14  736..................................................................................................................................................................................................................................AFEAKKVDALDKNVLSGAKFNLEDAFG----------------------------NIVVKDLVSDEDGIIQSSV--KNPGTYYLVEIMAPRGYEKLKDKIKVEIGNKDIGRIVDIGNIENIRQENPPVNPPAPPNTDEPINPPIPEVLNPPVPPSEEMIETPVKQIIPDTLVNPPVPPKTGDSTTIIEILLVIGAIVGLIVLRRNKNTN.. 972
5 -33.600IDP06530 surface protein [Enterococcus faecium DO] AFK59398 [Enterococcus faecium DO]  ali follow..  17  2.............................................................................TGFDENTGVALYD----------------------------------------------PAESALTFTTDTEGSISVN-----GLIDGNYTLVETKAPDGYQLTNPLQQTTGIIHGADEANLGNPNGVVNRENTTTDNTITVENVQNYGDFHFIKQDVNTQEKLADAEFSILRAKDPTVKLMKKIANLASGEYPYAWSDEVTGSDWEEVKLISDSEGKFSIEG--LKQGAYCLQETKAPEGYALPKNEAAYTEF----------------------------TVDDDPTTSDETTIDNQPKGI----------------------LPSTGGMGIVFILVGTALVGGAVIYFKKRHQETE. 270
6 -31.900IDP05223 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0160 [Listeria monocytogenes EGD-e]  ali follow..  20  334...........................................................................SQKNPLEGAEFKLVNGAG--------------------------------------------ATVQTGLKTNADGKLAIS-----NLKYDTYQLIETKAPQGYVLDASPVKFTI--------------DDTHQSLFVSKENTAIKGSVSLEK-----VDRDTKSLLADAEFELQDKDG----------------------------NTLKTNLKTDQKGKLTVAD--LLPGEYQFVETKAPTGYILDTTPLKFKISTEA--------------------------------LNVTVTKENTKKPEIPKVPVPPKKPEKPDKDSKQTALPKTGDSPLV-WGLLLVAISASGLIALRRK..... 565
7 -29.600IDP05655 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0159 [Listeria monocytogenes EGD-e]  ali follow..  14  405......................QAITVTKENTLNTGSVELTKLDAATKAAGATFELQDKEGNTLQTDLKTDENGVLKVTDLVPGSYQFYKLDNSPVSFEVIAGETDQVVKVTKENTLDSATKATLAGATFELQDKEGNTLQTDLKTDENGVLKVT-----DLVPGSYQFVETSAPTGYKLDNSPVSFEV------------VAGETDQVVKVTKENTLEVGSVELTK-----LDSATKATLAGATFELQDKEG----------------------------NTLQTGLTTDENGVLKVTD--LVPGTYQFVETKAPIGYELDTTPVSFEIVAGETDPIVKVTKENTLVPPTPVPPTPVPPTPVPPTPEPTVPPTKPEVPVTPKKTENSEDSPKTTPIRITQSLPKTGDTNSAGLGVILIALSLSGLLLKRK...... 793
8 -27.000IDP05538 putative collagen-binding surface protein [Clostridium difficile 630] CD3392 [Peptoclostridium difficile 630]  ali follow..  11  1MKKILRLCTGFLAFATVVTALPSTPVHAESKQYWTESAERVGIIEKVMNDGSIGSTFNEGMMKVEGETA----IDINTDFKNGYKTRARMSADQISDVALSLEYVKQYGEAHKELNYKQVYLLEQCVVWQRLSVHLGWQCDNVRASYDEIPKATQ-----DEVFAGAKAFVKENKGRYECGGYIYSGEGQELGQF-------------------WAKLNVGNAKLQKTSSNITDGNGNYSIAGATYGVFSDKDC---------------------------TKQLATLTTDKNGNTDVIE--VKAGTVYIKELSAPAGYKVDKTIYPLTIKAGETATLKVSDTPKVTDTLVELFKIDMETQKDNPQGNASLAGAEFTWKYYAGFYNKDNLPAEATRTWVTKTIAETDSDGTT......................... 364
9 -25.800IDP05502 putative collagen-binding surface protein [Clostridium difficile 630] CD0386 [Peptoclostridium difficile 630]  ali follow..  11  1MKKMLKRLCTGFLALATVVTALPTTPVHAESKQATQDEVFAGAKAFVKENKGFWAKLNVGNAKLQKTSSNSITDGNGNYSIAGATYGVFA-------------------------------------------DKDCTKQLATLTTNENGNTDVV-----EVTTGTVYIRELSAPAGYKVDKTVYSLKV-------------EAGKTATLKVSDTPKVTDTLIELFKIDMEKDNPQGNASLAGAEFTWKYYAGFYNK--------------ENLPAEATRTWVTKTIAETDSDGTTHYITKVLPLGTLTVEETKAPNGYLLDGAYMQAGDKSEQI...................................................................................................... 422
10 -22.000IDP01796 cell wall surface anchor family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5258 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  300.............LKGAVFEVSNENFKQNVTTSDKGIAELGIYSVKEIQAPAEVKTGETAVLELKNEN-TKVDVADGNTKLPNAEFTIYNEQG---------------------------------------------KEVVKGKTDEKGVAKFKLP-------GKYTYKETIAPNGYVINEETFAFEI--------------KENGEIIKHIVQDKKVEGELEITKV----DVADGNTKLPNAEFTIYNEQ-----------------------------GKEVVKGKTNEQGIAKFK---LPYGKYTYKETIAPNGYVINEEKFGFEIK-------ENGEIIKHIVKNKKEE------------KASFPSKPNKPTPNGEVKPSADVKPMQQPSTHNEVRLPATGGVSNQFT-LGISFIIAGAYVLRMKNRKE.. 626
11 -21.500IDP05077 hypothetical protein lmo1115 [Listeria monocytogenes EGD-e] lmo1115 [Listeria monocytogenes EGD-e]  ali follow..  18  639...........................................................................NYDGLGTGAIFTLENEDN---------------------------------------------EVIQEVTIDKDGQGNFK-----NIPVGTFYLKEKSASSTHYLMSEKKDGIKAFDEDDKLLGETSSTDEEPTILLEIENDLKKGTAELTKK-----DVSTGELLPNTGIRILDEE-----------------------------KNTIAEGRTDDKGIYTFEK--LPAGKYYFQEYDAPTGYQLDDTPMLFEI-------TENGEVVKCEMTNNKI-------------------------------------------PEKITSLPQTGDTTNI-TIFALGMLLSLGVLYFRRKKAKIE 873
12 -21.200IDP06545 gene: fms18; LPXTG family cell surface protein Fms18 [Enterococcus faecium DO] AFK59452 [Enterococcus faecium DO]  ali follow..  12  266......................PNTYTIKIDVETEGSLKIKKV--------------------------------ETGNVVPGTVFHLYTIDTTPITATIKSGETISVTSKNTREKGQIILNKMGVETGTDLWNDKYSEIVQEMTTDEKGHAETPKEIANALELGTYYVTETKASNGFVNTFKPVKVEL---------NYVNQTVALVTSNVKGQNQEITGETTLTKEDKDTGNEQGKAEFKGAEYTLFTAKDG--------QAVKWSEAFKPELVKGTKASDETVTLTLDEKNQVAVKH--LAINEYYWQETKAPEGYTLDETKYPVSIKKVDDNEKNAVITRDVTAKEQVIRGFDFFKFAGSAAGTAETGFNDLTFKSPLEGTSEITGAEDEAITAYNEQLGFDGYGKFENLPYGDYLL................ 673
13 -20.700IDP05697 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2178 [Listeria monocytogenes EGD-e]  ali follow..  14 1175.......................AVIVTKENTAKTGSVVLTKEDSVSKASGAEFELQNATGTKVKDNLTTNADGKLEVTDLAPGDYKFVETTPVTFTIEFNQATAVNVTKENVAKTGSVVLTKLDSKSRSNLAGAEFESLKDKVVTEANGQLQID-----NLAPGDYQLVETKAPTGYDLDATPVEFTI-------------EFNQKAPIQVTKTNTMSTGSVVLTKT-----DGETKALLANATFKLVDED-----------------------------NNVTENLTTDASGKLEITN--LAPGDYQLIETKAPAGYELDTVPVDVKITFDQKETLQVTKTNLKTVVSGKVIAEFVDTKGNVLEKNKAPIVVNPDKPVTPVKPTKPVDPAKKPTVKT--SLPSTGDESPYIIFTGLFASFMGLFLLRKSKKIND. 1599
14 -20.500IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  10  132..............................SPIEKANIQVN---------------VDETNQTLATSDTLSGKL--------GETYTTYQVKETPTNATGTYTTNTETIQINYVYEKTAVEGANVSVEYINEATNESIAPTETLSGKIGTTFQAEVKEIDG-----YELSQVPSNQSGTYTDQTQSV----------------------IFKYKKI-----------------------------------------------------------TTPDEVAKDVTVTYKDTKGNQLADPVILK-GSTFETEAKSFKGYKLTKTPSNHSSVFTSDSQEVEYVYSKDDAVITPPVTPVNPDKPIINPVKPVNPATSTVPNKNISKKNTTKTVNQTGKTSTALQLPKTGDSENLPLIIGVSLLISGVYIFTTRRKRVK. 439
15 -20.500IDP06516 von Willebrand factor, type A [Enterococcus faecium DO] EAN10603 [Enterococcus faecium DO]  ali follow..  14 1007...........................TAYNTFDYREIRVRKL--------------------------------HEGHTLDGAGFDIRKVGDS---------------SFPLYRAYTGNPLEPEESKRLPGIGYFYSRAVGVEKYVDLNYDQPL-----HLSIGEYEVSESVAPNGYRLSDQVFQFALNVIEDETAPLPEGYEIIDGVLQVTLEDELAPIDLELLKI-----DSMNSRRLEGAEFSIEKQNSAGEY----------------------EIIEGGLAPDPNDSSLFNASD--LLEGVYRIKEVKSPDSYRKLPGYFILEISYREEPDIENDRVVPGKEAGTLKVEISYYPNEEAETPDLQQEL------EYELLETNRIRLQLSVGNDPENPLPATGGSGRLYILLAAFFMALAGAAYRQSKKEGAR 1345
16 -19.100IDP05436 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2085 [Listeria monocytogenes EGD-e]  ali follow..  15  333...........................................................................SGDKALSGAVYAIKDNSQ---------------------------------------------SEVAKITTNQNGTGTAE-----GLPPGNYTATEVTAPLGYQKNTTPKKFTI-------------TYGDTNPVKLTFQNAEKTGSITIFKQ-----DEANKKGLANAVFDVKSID-----------------------------GTTLKKVTTNSKGYALAEN--LQPGTYVITEVTAPPGYEKSANEIRVTIPFNPQKTINITFSDNKIMVPLKPTPTKGS--TVVKVSGETTKITALPQTGDSSS--------------------STIFT-------GLLIVVASGLFVYRR...... 561
17 -18.900IDP05088 LPXTG-motif cell wall anchor domain protein [Bacillus anthracis str. Ames] BA_0871 [Bacillus anthracis str. Ames]  ali follow..  11  504...............................SSSSVSVDVEA----NKVVTVDVVNKKIPEKVTGQFEVVKVDANDKTKLLSGAEFEVYKLSDKEWKVTIQNEKEVVKVE-QIIKMDDKDQTKRLAGAEFTLKDVKGNVVKEGITTDKSGTVKVD-----GLVPGEYTLEETKAPEGYKALEVTIEVNV-----------VANEVVKQDVLNEKVKEEITGQLEITKV----DANDINKKLAGAVFEIWK------------------------------DGTKIDTLTSDENGKAISKE--LDPGDYILKEVQAPEGYELSDKEIEFTISNQKFEVVKLQITNKKETSKGPENPGEETEKPGEETEKPGEETEKPGMENPDKEKENPTLPEKGQGTSHAQQLPATGHDMNYLPFIGFALVLLGIRLRFMTKNN... 969
18 -17.400IDP05567 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2576 [Listeria monocytogenes EGD-e]  ali follow..  15 1202......................GAIVASNLTTDANGEITV-KYSFKETKAP--------EGYELATDV--IKQDSENGVRLAGAEFSLIAENG--------------------------------------------ETLQTNLKTDEAGELEVN-----NLAPGNYRIQETKAPDGYQLESTPWQFEI-------VANDTSQVTVIAENAKLEPDVAETGAVRLIKT-----DSETGTRLSGAVFSLLDESG----------------------------KVIQANLTTDENGEIFIDG--LTPGNYSLKETKAPDGYELAEQPWNFQIVKGQVDAVIIKA--------------------ENSPIIANGAISFEGDETDKPESIEIPVRKTDTLATEVTKLPQTGDKTSF-VILGGSAVLMSLLYLRKKSS.... 1530
19 -17.100IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  10  69.....................................................................................................................................................................................................................................................................................................................................................................DMAKKEEAIKAQQKSEEGKKEAAQVQPKNAATKKEVAKPAVQGEKLPNTASNNVAMMALSACLVGIGTLFGLKRRNKVKA 148
20 -16.700IDP05452 collagen adhesion protein, C-terminal [Bacillus anthracis str. Sterne] BAS5207 [Bacillus anthracis str. Sterne]  ali follow..  12  509.......................TASVTATNSLTKGAVELTKVDDIDGAEGAVFKIVDMNGNDVRTDLTTDKDGKISVSDLRPGDYQFYDLNQNPINFTVEKSQTATASVTATNSLTKGAVETTLEGAIFKIVDSNGHDVRADLTTDKDGKISVS-----DLRPGDYQFIETKAPTGYDLNAKPIPFTI-------------TKGQSQVTSVTALNSLTTGSMELTKV-----DIDHNGTLEGAIFNILDQDG----------------------------KVVREGLKTDGHGKLIVND--LKPGNYQLVETKAPEGYQLDASPISFTIEKAQASPLQITVSNKKVESSSGGDNKPITPPNKEEKPGKETSEELENGNPKTQTNKQQDDRNTGKELPNTGHKNSTQTVGIILLLAGLLSV................ 873
21 -16.200IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  16  260...................................................................................................................................................................................................................................................................................TPAPVAGANITVNHLDSNGNKIAESDTLT-NSNYQSESKKITGYTLETTP-------NATGTFTDTPQTVDYIYKKDTVTPTPITVNPVEPVKPVNPVVNKPVTVKPANDNTNPSTSNSVEKTTYSSLPTTGDTDQSSTIFGALLLLISAPLLLFKKK.... 415
22 -14.900IDP05200 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2714 [Listeria monocytogenes EGD-e]  ali follow..  13  124...................................................................................................................................................................................................................................................................STAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPEGTTTADKDGYFYAEWATTPKQITAYAFDESGNSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVGVIVILVAVLLLRKRKK.... 315
23 -14.800IDP05443 hypothetical protein lmo0463 [Listeria monocytogenes EGD-e] lmo0463 [Listeria monocytogenes EGD-e]  ali follow..  20  19....................................................................................................................................................................................................................................................................................................................................................................ASQTVVEVFISEDDLDVSEENIQEIPKK----ELAASSDKDNKQHMLPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE.. 93
24 -14.600IDP06529 gene: acm; collagen-binding MSCRAMM Acm (Fms8) [Enterococcus faecium DO] AFK59905 [Enterococcus faecium DO]  ali follow..  6  370.......................LLTSNEQGEASIKGLQVGDYVVKEKEAPNWIDFDPLSSNELKFSINENDTEGVSLPIYNKKKVTNITATKIWNGGTTPRPSIYFKLFRASTNN-----------------WEPVPDAETKRLDNGITSVTWE-QYDDSGNEYTFKVQEVDQNGNDYVPSGYQKIENGLVVT--------------------NENKEVISVSGQKTWEDNENQDGKRP-TTITVNLLADGQPIQHKEVSEKDD----------------RYRFTNLPKYRDGQ-----------IYTVTEDNVP-EYSTTIDGYNIKNSYTPEKTNISIPGSHITPWKNFPEKTEREKIRNLFSQKLQIFAHTGESSEQRSNYISKRAVPKQITNKSKSILPKTSSKKSFAVIIGLLIVTICAGIFLQKYKK... 720
25 -14.100IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  11  982......................TPSNKKGTFGASNVTVNY---VYKANGYALITTYKDTQGKDLKPLAIDTDPYTATALNIPGYTLT--NEKGVFGASDETVNYVYKANDYTLTTTYKDANGKELQAPKVDAKTYHIQDTYKTTAAVIPG----------------YTLVAIPKNDQGTFGANNVTQTNDYTLTATFKDAQG-------------NELKATEVDAQKYHIHDTYTSKAAVIPG--YTLEKTPTNETGTFNASDIQ--------VNYVYKANDYQLTSTFKDQQGN-TVDAKTYHIHEAYTTKARLIPGYSLVAAPKNQIGAFGTS----------------------DVTVNYVYKKDAIIKPITPAKPTILTIKTPASKVIKTKVVKQ--TLPKTGDDDGLLNLLRLIGLVLILGVFLAVGSKKLR 1348
26 -13.700IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  11  1MKKLIMTLFIAMLALAGCNTNKEEPKKEQKLEAVKVAVQTNPKEIKPGEKTEVQALVTQGKEKVTDA--------------DDVKFEVWK-------------------------------------------AGDEKHEMLEGKHKGKGVYAVEKT----ETDGVYHIIAHTNAREMHVMPEVKVAVGNAKVEDAKKENSDHGAGHGDHKSDTMIHLMAGDIKAAESTMKVHLKQKEEALTGAELEIWKDGVEKHEFIPAK---------------------------EGNKGEYETKHTFKENGSYKV-KVHVKKGELHEHKEETVEVK.......................................................................................................... 246
27 -13.400IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  12  377..........................................................................................................................................................................................................TEEPQTVIYVYTKNSVAAAPVTVKYLNEEGKILTASDNLTGNPYQTKAKEFAGYTLDESKLPTNASGVFKTNAQTVTYVYKTIPASIKAHDSTMNVGDT--SLGVAVPFDEVKVDGSVDTTKAGVYPVTYSFAGDSVTIKVTVKATVVPAPPITPIKPVVPAPANPNTPSTQQTPTKQSGTLKIKATHQEQPIVAGN-LKLPTTGDNLWLYSIFGFITVCLSFVLFFRLKKQKNS 626
28 -12.500IDP05671 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0725 [Listeria monocytogenes EGD-e]  ali follow..  26  31..........................................................................................................................................................................................................................................................................................................................................................................................................ENTSSASLLPSTGDAFSV-IVIGVVLVALAVVLFIKKK..... 69
29 -12.000IDP02382 hypothetical protein lmo0320 [Listeria monocytogenes EGD-e] lmo0320 [Listeria monocytogenes EGD-e]  ali follow..  13  159........................................................................................................................................................................................................................................LTITDQNAINAVQEQINTVTSSEKESFQEQ--NNAQQQLDARIAQEQAAIQAVNQLFLEDS---ETTQDLIDQAQTLVDVLPASE--TLQANIVKAQTELDERSKPVTPPKNDPEPDNPEEPVTPVDPATPIPDEPSTPTDPATPEKPEITTPENPESTVVEAATKTTLPLPKAGDTETT-ILFGTLMLSSLVLFKRKK...... 399
30 -11.500IDP91913 cell wall surface anchor family protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006539 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  9  219.................................................................................................................................................................................................................................................................................................................................EKAELLARVEAEKQAALKEIENAKTMEDVKEAETIGVQAIAMVTVPKRPVAPNAAPKTTSAPQATAGTMQDVTYQSPAGKQLPNTGSASSALASLGLVVATSGFALLGRKTRRRK. 334
31 -11.500CPX_91689_91672 Complex of C4BPA_HUMAN with ARP4_STRPY [Undefined organism]  ali follow..  11  841...................................................................................................................................................................................................................................................................................................ISDASRQGLSRDLEAS---EAKKKVEADLAEANSKLQALEKLNKELEEGKKLSEKEKAELQARLEAEAKALKEQLAKQAEELAKLKGNQTPNAKVAPQNRSRSAMTQQKRTLPSTGETANPFFTAAAATVMVSAGMLALKRKEEN. 984
32 -11.200IDP05010 putative lipoprotein [Bacillus anthracis str. Ames] BA_4934 [Bacillus anthracis str. Ames]  ali follow..  16  1MKKVLMLFVLLLTASILLIGCSTKKEKAGMNLEKAQKVEIES---SEKKVITDKKEIEKLFEVMKMDKWEMQSAPLDTPQ--GKTFKMYQEDTTKLSESSKDKKELHEIGT...................................................................................................................................................................................................................................................................................................................................... 110
33 -11.200IDP91950 beta-N-acetylhexosaminidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006639 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  13  938...........................................................................EVDLPTVGSMLSIWAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQGLKPAATHSGSLDENEVAANVETRPELITRTEEIPFEVIKKENPNLPAGQENIITAGVKGERTHYISVLTENGKTTETVLDSQVTKEVINQVVEVGAPVTHKGDESGLAPTTEVKPRLDIQKEEIPFTTVTREN--------LLLKGKTQVIT-KGVNGHRSNFYSVSTSATLVNSVVAQEAVTQIVEVGTMVTHVGDENGQAAIAEEKPKLEIPSQPAPSTAPAEESKALPQDPAPVVIEKKLPETGTHDSALVVAGLMATLAAYGLTKRKED.... 1312
34 -11.000IDP02817 hypothetical protein lmo2185 [Listeria monocytogenes EGD-e] lmo2185 [Listeria monocytogenes EGD-e]  ali follow..  12  1MKKLWKKGLVAFLALTLIFQLIPGFASAADSRLDGGEYQVQVNFYKDNTGKTTKESSEENGQYQDRYEDVQTVSTDAAKDTRVEKFKLSSLDDVIFSYMHIKVDAISYDHWYQVDLTIDPSTFKVISEPAVTTPVTLSDGIYTIPKVKNGKKMVAMTVNDNKTVTALKTTLAGTLQDVKV-VSEDKDANTRIVEFEVEDLNQPLAAHVNYEAPFNGSVYKGQADFRYVFDTAKATAASSYPGSDE----VVNPGETNPPVTKPDPGTTNPPVTTPPTTPSKPAVVDPKNLLNNHTYSIDFDVFKDGT---TETSMMESYKVENNQPYVYLTLTNSSGDINKNTRTVKYPVKDGTAVTLKEPVKKDILNTGNVASNNNAGPKLAKPDFDDTNSVQKTASKTEKNAKTND-SSSMVWYITLFGASFLYLAYRLKRKR.. 567
35 -10.600IDP91750 SPG2_STRSG [Streptococcus sp. `group G`]  ali follow..  16  511..................................................................................................................................................................................................................................................................................................................................................................EKPEASIPLVPLTPATPIAKDDAKKDDTKKEDAKKPEAKKEDAKKAETLPTTGEGSNPFFTAAALAVMAGAGALAVASKRKED 593
36 -10.500IDP05488 putative LPXTG-motif cell wall anchor domain protein [Bacillus anthracis str. Ames] BA_4789 [Bacillus anthracis str. Ames]  ali follow..  13  26........................................................................................................................................................................................................................................................................................................GNASAKLADGTYDIDSASMANDYIVKNGEMRVQVPMNHSSKDESADKRTVEFKVDDLSKPATTKNNDQAKTDTQVKEEKTKVESKETAKEVNKETKNENGKAEKTDNPKTGDEARIGLFAALILISGVFLIRKVKLSK... 237
37 -10.500IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  29  2LKKLGILVLGSAVALSLVACGDSTKEASNEKKEEPKQ................................................................................................................................................................................................................................................................................................................................................................................................................ 38
38 -10.000IDP05034 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_1274 [Bacillus anthracis str. Ames]  ali follow..  10  1MNK----KTIFFLLTCLLLVASTTYIICNKREQVPPMLVWEGQEYYVTNEPAKAEEVGQRGEVTKKIETSEKPIKNSESNIVQEKTEVFTMIEE....................................................................................................................................................................................................................................................................................................................................................... 91
39 -9.900IDP05763 hypothetical protein lmo2331 [Listeria monocytogenes EGD-e] lmo2331 [Listeria monocytogenes EGD-e]  ali follow..  10  1MKKGIALLAGFMLAFSIFLTGCGGTDNTRKENHSDGS-KNKKDNNTSDEYVEDGLLLKVGEWTKDKDYDTKVTLEKIATPLGDLNMLIKDVK......................................................................................................................................................................................................................................................................................................................................................... 99
40 -9.880IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  11  696......................GSSVTVKINGKDDMSLNLGDYVWEDTN---------KDGIQ------------ANEPGIKDVKVTLKDSTG---------------------------------------------KVIGTTTTDASGKYKFT-----DLDNGNYTVEFETPAGYTPTVKNTTADDKDSNGLTTTGVIKDADNMTLDSGFYKTPKYSLGDYVWYDSNKDGKQDSTEKGIKDVTVTLQNEK-----------------------------GEVIGTTKTDENGKYRFDN--LDSGKYKV-IFEKPAGLTQTVT................................................................................................................. 905
41 -9.830IDP05672 hypothetical protein lmo0778 [Listeria monocytogenes EGD-e] lmo0778 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKK---KWLLLILSVIVLCAIIFGIKWLLYRDNLVEMMQVDDTLYVSYEPAKQEDALEKIGEIEHRIRHYRIPNKNFTSNYLSEGTELYKAKNG....................................................................................................................................................................................................................................................................................................................................................... 92
42 -9.780IDP91909 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002785 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  17  55..................................................................................................................................................................................................................................................................................................SDNGEAKLGENVKTKGQYFYQRANGTQTYSVATKKVTIKINVKETSDTANGSLSPSNSGSGVTPMNHNHATGTTDSMPADTMTSSTNTMAGENMAASANKMSDTMMSEDKAMLPNTGETQTSMASIGFLGLALAGLL-LKNKKEEN. 246
43 -9.660IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  11 1328.......................VNEDGISAEPVAVTVTINKEPAAALKADAEVSYAKNEAVTFKDVHLEGTEAPSTAKATSNFDSVVYTVTINATNEDGAVSTPIEVIVHIEAESAPVITANAEVKYNKHEQTDERRFLYDSEAKIDEANVEIKTEKVDINKVGTYTVTLTATNED--------QAANPVEVSVIVSDAAAEKVNVKYVD---------------ENGSEISAAETLTGNLDETFSIDAKSIAGYKCDATLSGVFSTVEQTVVFHYKAIKPGVVTIKYEDTNGKAVDEDKQITVGDDFEAEAQTVSGYSCRAIASEITVQYVDESGKKLADSKKVTIEGYSVVGDDSAKGVFTEKSQTVTFKYKKNTQVSKDDPKVKGKTNQPSSTDTNNSLPATGDTENMAVLIGFNMLIVASIFLFRKPKTNQ. 1778
44 -9.380IDP05417 conserved domain protein [Bacillus anthracis str. Ames] BA_4788 [Bacillus anthracis str. Ames]  ali follow..  7  1MFKQFKMIIAVFAVLFTFIATLGLQDAKAATKLADGKYNIAFTVWKGDKDESS................................................................................................................................................................................................................................................................................................................................................................................................ 53
45 -9.370IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]  ali follow..  5  1MKMLKKGTAVLFVMIMAVMLVACGDKEETKQNGVDSKLTYT--KVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKI----------EYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVS.......................................................................................................................................................................................................................................................................................... 152
46 -9.350IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  11  696......................GSSVTVKINGKDDMSLNLGDYVWEDTN---------KDGIQ------------ANEPGIKDVKVTLKDSTG---------------------------------------------KVIGTTTTDASGKYKFT-----DLDNGNYTVEFETPAGYTPTVKNTTADDKDSNGLTTTGVIKDADNMTLDRGFYKTPKYSLGDYVWYDSNKDGKQDSTEKGIKDVTVTLQNEK-----------------------------GEVIGTTKTDENGKYRFDN--LDSGKYKV-IFEKPAGLTQTVTN................................................................................................................ 906
47 -9.310IDP05036 hypothetical protein BA_1663 [Bacillus anthracis str. Ames] BA_1663 [Bacillus anthracis str. Ames]  ali follow..  9  1MKNVKFFLMSWLCIHVCL--LFPLQSKAEEQNVPEQNINEVNVQEENKEVQEQLEQVEMKQDKEEQQEAKNEQETEKKIEQGVITVNKPELKVLVTIEPKEKNVQSIKGILRLPKNGDQYEQERMLSFKYEEETKRWIANYKVETFDLQGDWNLQLVQSYKENEKEELVENEVKVPHINNEMPTLDKELPKLHKVTIDEMKGNVIERDSIRVRVKATDVESAVKEVHVTLKGKENKEITFLL-KVFEITDALPSGTYELLVEVVDAAGNKLIEASEYVVSVLEQKTEEDKKIEEPENEDKLENKLEDKKVTEKQEDSKVEISLPEEKTPVVQIPKKEEKVNDLIKEPLKEKEKITYVIKEPLTDNKEVNKTKAQKDKDNNNQVISKKKEKKEEPEEKKEAKSEQGIQASNVFAIMSGLFVLFLVL-------KSNKE 448
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.