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Query: IDP06539 gene: fms13; LPXTG family cell surface protein Fms13 [Enterococcus faecium DO] AFK58158 [Enterococcus faecium DO], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKKMIVTGMSVLLLVTAGIGIFGNGKLVKAEEVAQKPSEVTITLHKKGFSSVPEERPNSGLVSTDFGEENIPGVDFDLFDVTEVYYDLIRDNPLTPEREDGLNSAEAIEWIQKRHTESWFLKYRLTSIDKQTTNEAGEAVFSTVQVTEEAPSSRDKVYLFLETYSPAHISRIASPMVVMMPVMMPDMVDGVWDGSTWKDTYNTDVHLYPKNEIREADKQMNVEESDLRQVTIINEAGEQETISYIDLERGKTASYTITAPIPYFIDSVLENGSAVIKNYKITDTPTVGLTYYDQEIEVRAGETILTKGQDYIVEVVSNGFVVTILTEENGVAKVDTLGRLADARGGDLTITYNLKVSTELEADDFHNNTAVIEIGRNDEFDYEEGVEPPEKVTTGGRKFEKYDASSSELLKDARFELWNEDRSEYAIFYKGESPLAVYESGADRIEWATSGQATEFVADGNGYFEVQGLDYGTYQMKETMAPEGYVLPTGEAAFTEFIISYGSYNEEIQIVGVENPGPERVPNMKRGSLPATGGNGLLAFLLIGISLMIGAYSWYRKSKMKSEVLast
1 -133.000IDP06539 gene: fms13; LPXTG family cell surface protein Fms13 [Enterococcus faecium DO] AFK58158 [Enterococcus faecium DO]  ali  100  1MNKKMIVTGMSVLLLVTAGIGIFGNGKLVKAEEVAQKPSEVTITLHKKGFSSVPEERPNSGLVSTDFGEENIPGVDFDLFDVTEVYYDLIRDNPLTPEREDGLNSAEAIEWIQKRHTESWFLKYRLTSIDKQTTNEAGEAVFSTVQVTEEAPSSRDKVYLFLETYSPAHISRIASPMVVMMPVMMPDMVDGVWDGSTWKDTYNTDVHLYPKNEIREADKQMNVEESDLRQVTIINEAGEQETISYIDLERGKTASYTITAPIPYFIDSVLENGSAVIKNYKITDTPTVGLTYYDQEIEVRAGETILTKGQDYIVEVVSNGFVVTILTEENGVAKVDTLGRLADARGGDLTITYNLKVSTELEADDFHNNTAVIEIGRNDEFDYEEGVEPPEKVTTGGRKFEKYDASSSELLKDARFELWNEDRSEYAIFYKGESPLAVYESGADRIEWATSGQATEFVADGNGYFEVQGLDYGTYQMKETMAPEGYVLPTGEAAFTEFIISYGSYNEEIQIVGVENPGPERVPNMKRGSLPATGGNGLLAFLLIGISLMIGAYSWYRKSKMKSEV 565
2 -88.100IDP06520 gene: ebpCfm; pilus subunit protein EbpCfm (Fms9) [Enterococcus faecium DO] AFK59016 [Enterococcus faecium DO]  ali follow..  20  1MKNHKKINVMLGVLFLILPL----LTNSFGAKKVFAEETAAQVILHKKKMTDLPDPLQNSGKEMSEDQYQGLADISFSVYNVTQEFYAQRDKGASVDAAKQAVQSLT-----------------PGTPVASGTTDADGNVTLS----LPKKQNGKDAVYTIKEEPKDGVSAAANMVLAFPVYEMIKQ----ADGSYKYGTEELDTIHLYPKNTVGNDGTLKVTKIGTAEKNDTSKVDKTTPQLNGKDVAIGEKIQYEISVNIPLGIADKEGTQ-NKYTTFKLIDTHDAALTFDNDSSGTLYDGNKEIDPVNYSVTEQTDGFTVSVDPNYIP----------SLTPGGTLKFVYYMHLNEKADPTKGFSNQANVDNGHTND-----QTPPSVDVVTGGKRFVKVDGDSDQTLAGAEFVVRDQDSDTAKYLSIDP-------STKAVSWVSAKESATVFTTTSNGLIDVTGLKYGTYYLEETKAPEKYVPLTNRVAFTIDEQSYVTAGQLIS--------PEKIPNKHKGTLPSTGGKGIYVYIGAGVVLLLIAGLYFARRKHS-QI 625
3 -50.200IDP06525 gene: fms17; LPXTG family cell surface protein Fms17 [Enterococcus faecium DO] AFK58157 [Enterococcus faecium DO]  ali follow..  16  1MKK-LLCLMLQLLVLLPLAAVLLPHAMSAEESG----EDVVEFVLHKRMIRDIDEYHENDGLAISESQTVPLNGATFAIYDMTDYYHEKKAAENMTPKEFVQQIAETNRNNIRQLITEERIGTSVTTGKDTVGGLGDGIARIK-----PKKNQDRDAVYLIFEESIDPEVGQTAIPIAAILPIYHPT----------ESTEELQEIHIYPKNVGYLRDPYFFKYGRQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RGTTEKGKPLEGAVFALYQMIEGGKYYLDMAPANDLKNQIKPADNDPLNDKNVSKFISDKEGLVTTGQLPSGTYYFEELKGVEGYEMDEASKRIEVIIPEFWVDAKGQPQVSAYESATPRVYNGKWSVFPQTNEARTLISLL-GILLLLGAVLLIKKERGEKN. 436
4 -42.300IDP06530 surface protein [Enterococcus faecium DO] AFK59398 [Enterococcus faecium DO]  ali follow..  21  8.....................................................................................................................................................................................................................................................................................TGVALYDPAESALTFTTDTEGSISVNG--LIDGNYTLVETKAPDGYQLTNPQKETTFIVKNGKLQQTTGIIHGADEANLGNPNGVVNRENTTT-------------DNTITVENVQNYGDFHFIKQDVNTQEKLADAEFSILRAKDPTVKLMKKIANLASEYPYAWSDEVTGSDWEEVKLISDSEGKFSIEGLKQGAYCLQETKAPEGYALPKNEAAYTEFTVDDDPTT----------SDETTIDNQPKGILPSTGGMGIIVFILVGTALVGGAVIYFKKRHQETEA 271
5 -39.900IDP05655 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0159 [Listeria monocytogenes EGD-e]  ali follow..  16  331.............................................................TKEDAKTKATLEGAEFKLVDSKG-----------------------------------------TVLQENITTNASGQLSIADL---------KFDTYQLIETKAPTGYKLDTTPVEFTIGENNQAITVTKENTLNTGSVELTKLDAATKATLAGATFELQ--DKEGNTLQTDLKTDENGVLKVTDLVPGSYQFVETSAPTGYKLDNSP-------VSFEVIAGETDQVVKVTKENTLEVGSVELTKLDSATKATLAGATFELQDKEGNTLQTDLKTDENGVLKVTDLVPGSYQFVETSAPTGYKLDNSPVSFEVVAGETDQVVKVTKENTLEVGSVELTKLDSATKATLAGATFELQDKEGNTL---------------------------QTGLTTDENGVLKVTDLVPGTYQFVETKAPIGYELDTTPVSFEIVAGETDPIVKVTKENTLVPPTPVTTPIRITQSLPKTGDTNSFAGLGVILIALSLSGLLLKRK...... 793
6 -36.300IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  11  1MKKGNRKALLISLIMILSMVVSTIYPTVSYASELGENSQIQS---NKKPEQTPEEDKSTDNKKPEQTPEGEKPIDNKKPEQIPEEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLEDENLLKVLEEELNEENEDYGFVVKINNNTIETESMKKISFNLTYTPTSKGIQAGDSITFKVPMQGKIGLEAYVKKVDEDTNAKIHIETTGKIESGSGDIDVEIKPGDKTDVPDAKGTEGKKSTTVFMPVKNKDINYSIQVN----------EKQEELKDIILYDELPEGLTLINGSVSVVTSDGKEVSDFNYKARISDKNAKHGNKYKNVARIESDGKKIQEDDATVSIVINYQISINDDISIEDSYINRAVLDANNVAQINGSSPPGVETTKQGYAFEAKKVDALDKNVLSGAKFNLEDAFGNIV---------------------------VKDLVSDEDGIIQSSVKNPGTYYLVEIMAPRGYEKLKDKIKVEIGNKDIGREVVKPSVSEEKNNKVKDDTLVNPPVPPKTGDSTTIIGEILLVIGAIVGLIVLRRNKNTN.. 972
7 -35.900IDP05077 hypothetical protein lmo1115 [Listeria monocytogenes EGD-e] lmo1115 [Listeria monocytogenes EGD-e]  ali follow..  13  341............................TIELTFDNKEQLGIATLTKAGEEAKEIEVTESEYHTFKYNANVVAGVTYRIEATQDI-----------------------------HSVDGTLKAKKGDTVATVTTDEKGQWHSPNLY---------LGEYQAVEVSAPAGYILDTRPIPFSLTYAGQEVELASTAIKATNEFQTLDLRLFKDEESILSWNNNQPEIEPANALLGYQTVSDGVASFELKLPQGKYYLKELEAGTSHVLNDTE--------DFKFTENNNATYPIYIYQDTVAVGNETMLKIARTPIINKLTGAIFTLENEDNEVIQEVTIDKDGQGNFKNIPVGTFYLKEKSASSTHYLMSEKVIRIESTKDGIKAFDEDDKLDLKKGTAELTKKDVSTGELLPNTGIRILDEEKNT----------------------------IAEGRTDDKGIYTFEKLPAGKYYFQEYDAPTGYQLDDTPMLFEITENG--------------EVVKCEMTNNK--SLPQTGDTTNITIFALGMLLSVSTLGVLYFRRKKAK. 871
8 -34.800IDP05223 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0160 [Listeria monocytogenes EGD-e]  ali follow..  11  1MMSNL-KKFGLAFLSVILLVNVIFQTNFVKAATNYGSDFLKTVELLDADGNPQTDFGYYDSIKVHPNSTNVKEGDTMEF-VLPP--------------------------KIVTDLDFSLKDHDGNTVGHVIAKKSTGQVVITFTDFVEKNSNISGYLDFWTNWDKSLVEGNENVPVEFPV------------------------------------NGTTETIDVGVGGKNQIDPDESLYKYGWADAENPELIQWVVRVN----------YSKQNIQNAVYEDFIGPKQVVDFNSIKADPDDNFTPGAEVPSSAITQTTDGFKVDLSSQKNPLEGAEFKLVNGAGATVQTGLKTNADGKLAISNLKYDTYQLIETKAPQTHQSLFVSKENTAIKGSVSLEKVDRDTKSLLADAEFELQDKDGNTL---------------------------KTNLKTDQKGKLTVADLLPGEYQFVETKAPTGYILDTTPLKFKISTEALEIPKVPVPPKKPEKPDKIISEDSKQTALPKTGDSPLVNGWGLLLVAISASGLIALRRK..... 565
9 -29.700IDP06516 von Willebrand factor, type A [Enterococcus faecium DO] EAN10603 [Enterococcus faecium DO]  ali follow..  15 1007................................TAYNTFDYREIRVRKL-----------------DHEGHTLDGAGFDIRKVGDSSFPLYR--------------------AYTGNPLEPEESKRLPGIGYFYSRAVGVEKYVD-LNYDQPLHLSIGEYEVSESVAPNG--------------------------------------------------------------------------------------YRLSDQV----------------QFALNEE------------------------------------------------------------------------GKFIIEDTVIEDETAPLPEGYEIIDGVLQVTLEDELAPIDLELLKIDSMNSRRLEGAEFSIEKQNSAGE---------------------YEIIEGGLAPDPNDSSLFNASDLLEGVYRIKEVKSPDSYRKLPGYFILEISYREEPDIENDRVVPGKEARLQLSVGNDPENPLPATGGSGRLFYILLAAFFMALAGALFVRQSKKE.. 1342
10 -28.200IDP05452 collagen adhesion protein, C-terminal [Bacillus anthracis str. Sterne] BAS5207 [Bacillus anthracis str. Sterne]  ali follow..  15  31...................FTITESQTTSATVTAKNSLTKGGIELTKVNAAD---------------EKETLEGAVFKIVN----------------------------------------RDTNEDARTNLVTNSEGKLVVDDLR---------PGNYKLIETKAPTYYDVNVEPIEFTIEKGQQTLLPLTFKNSLTKGKVKLIKEDDVESSIALAGAVFTLQDANGTEIAKDLKTDEHGVLVIPDLAPGDYQFIETAAPEHYKLDQTP--------KFTIERSQTKHVFVTATN-SLTKGSVELIKVDDVEENTTLEGAVFKIVNKDGHDVRTDLTTDKNGRLVVDELPPGDYEFIETKAPTHYDLNETPIKFTVKKGQEKIASVTATNSLTKGAVELSKVDDIDGSTLKDAVFKIVDMNGNDV---------------------------RTDLTTNKDGKISVSDLRPGDYQFVETKAPTHYDLNQTPINFTVEKSQTATASVTAKNSLTKGAVELKVDDIDGTTLETTDKDGKISV........................ 472
11 -27.800IDP05502 putative collagen-binding surface protein [Clostridium difficile 630] CD0386 [Peptoclostridium difficile 630]  ali follow..  12  186..........................EGQELGQFWAKLNVGNAKLQKTSSNASITDGNGN---------YSIAGATYGVFA----------------------------------------DKDCTKQLATLTTNENGNTDVVEVT----------GTVYIRELSAPAGYKVDKTVYSLKVEAGKTA-----------------TLKVSDTPKVTDTLIELFKIDMETQKDNPQGNASLAGAEFTWKYYAGFYNKENLPAEATRTWVTKTIAETDSDGTTHYITKLADAYKVSGDSFYMQDGKAVLPLGT-LTVEETKAPNGYLLDGA-----------------------YMQAGDKSEQIKGLYVTQITEDGDLAVLSGSNQFSVSDKVI--RGGVKIQKRDLETGDTLKDTAFDIISLNDNVVLVEGKLYK---------------KNEVVKTIHTDIEGVASTSLLPYGKFRIVESEAPNGYLTDGAKIDFAITENGKIVDLTDEAHSIYNQIKRGDIEGVK....................................... 579
12 -27.500IDP05538 putative collagen-binding surface protein [Clostridium difficile 630] CD3392 [Peptoclostridium difficile 630]  ali follow..  11  184........................SGEGQELGQFWAKLNVGNAKLQKTSSNTSITDGNGN---------YSIAGATYGVFS----------------------------------------DKDCTKQLATLTTDKNGNTDVIEVK----------GTVYIKELSAPAGYKVDKTIYPLTIKAGET-----------------ATLKVSDTPKVTDTLVELFKIDMETQKDNPQGNASLAGAEFTWKYYAGFYNKDNLPAEATRTWVTKTIAETDSDGTTHYITKLADAYKVSGDSFYMQDGKAVLPLGT-LTVEETKAPNGYLLDGA-----------------------YMQAGDKSEQIKGLYLTQITEDGDLAVLTGSNQFSVSDKVI--RGGVKIQKRDLETGDTLKDTAFDIISLNDNAVL---------------VEGKLYKKNEVVKTIHTDLEGSTSADLLPYGKFRIVESEAPDGYLTDGAKIDFAITENGKIVDLTDEAHSIYNQIKRGDIEGVK....................................... 579
13 -27.400IDP01796 cell wall surface anchor family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5258 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  18  272..........................EKISTDLVVNWESVGSLKIMK-----------------LGEKKEVLKGAVFEVSN--------------------------------------------ENFKQNVTTSDKGIAELGNLP----------GIYSVKEIQAPAGYVLDRSVKKIEV-------------------------------------------------------------------KTGETAVLELK-----------------------NENVKGELEITKVDVA---DGNTKLPNAEFTIYNEQGKEVVKGKTDEKGVAKFK---------------KY--TYKETIAPNGYVINEETFAFEIKENGEIIKHIVQDKKV-EGELEITKVDVADNTKLPNAEFTIYNEQGKE----------------------------VVKGKTNEQGIAKF-KLPYGKYTYKETIAPNGYVINEEKFGFEIKENGEIIKHIVKNKKEEKASFPSKPNTHNEVRLPATGGVSNQFTFVLGISFIIAGAYVL-RMKNRKEM 627
14 -27.200IDP05697 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2178 [Listeria monocytogenes EGD-e]  ali follow..  13 1078........................TADIATSVTIENTEQTGSVVLLK----------------EDSATKDAIAGAEFELQN-----------------------------------------ADGTKVADNLVSNADGKIEVTDL---------APGDYQFVETKAPTGYVLDGAPTKFTVEFNQEAAVIVTKENTAKTGSVVLT-KEDSVSKATLSGAEFELQNATGTKVKDNLTTNADGKLEVTDLAPGD---YKFVET------------DATPVTFTIEFNQATAVNVTKENVAKT--GSVVLTKLDSKSRSNLAGAEFELQTKLGVSLK----DKVVTEANGQLQID-DYQLVETKAPTGYDLDATPVEFTIEFNQKAPIQVTKTNTMSTGSVVLTKTDGETKALLANATFKLVDEDNNV----------------------------TENLTTDASGKLEITNLAPGDYQLIETKAPAGYELDTVPVDVKITFDQKETLQVTKTNLKTVVSGKVIAEPTVKTSLPSTGDESPYGIIFTGLFASFMGLFLLRKSKKIND. 1599
15 -26.900IDP06545 gene: fms18; LPXTG family cell surface protein Fms18 [Enterococcus faecium DO] AFK59452 [Enterococcus faecium DO]  ali follow..  14  261......................GAIDKPNTYTIKIDVETEGSLKIKK----------------VDKETGNVVPGTVFHLDF------------------------------------------GKTLPAKDVTTDKEGIATLDEI--------PHGAKVTITEKSVPAPYTIDTTPITATIKSGE-------------------TISVTSKNTREKGQIILNKMGVETGTDLWNDKYSLAGNT--KDSPTGEIVQEMTTDEKGHAETPKEIANALELGTYYVTET---------------------KASNGFVNTFKP-----------------------------KVELNYVNQTVALVTSNVKGQNQEI----------------------TGETTLTKEDKDTGNEFKGAEYTLFTAKDGQAVKWSEAFKPELVKGTK-------ASDETVTLTLDEKNQVAVKHLAINEYYWQETKAPEGYTLDETKYPVSIKKVDDNEKNAVITRDVTAKELTFKVSPLEGTSE-QLGFDGYGKFLPYGDYLL................ 673
16 -26.800IDP05436 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2085 [Listeria monocytogenes EGD-e]  ali follow..  17  221...........................................................NGDGIQQDSEEPAPGVKVDLLT------------------------------------------KDGTFKESATTNNIGSYLFTDV---------LPGDYQVKFSLPNNDFIFSKANQGNDKSLNSKPDKTGIASVNVPNLK---------------------------------------------------------------------------------NFDIDAGITTNGKVEIQKLSGDKALSGAVYAIKDNSQSEVAKITTNQNGTGTAEGLPP-------------NYTATEVTAPLGYQKNTTPKKFTITYGDTNPVKLTFQNAEKTGSITIFKQDEANKKGLANAVFDVKSIDGTT----------------------------LKKVTTNSKGYALAENLQPGTYVITEVTAPPGYEKSANEIRVTIPFNPQKTINITFSDNKIMVPLKPTPTKGSTVV--STIFTGLLIVVASGLFVY................ 559
17 -25.900IDP05088 LPXTG-motif cell wall anchor domain protein [Bacillus anthracis str. Ames] BA_0871 [Bacillus anthracis str. Ames]  ali follow..  16  418...................VTIDNTNIIEFVIKNTKKLENGQLKLLK----------------KDSESGQLLPGAKFDVID------------------------------------------KDGKVVETIVTDDKGEALSKQL---------PVGSYTLKEVEAPKGYELSSSSVSVDVEANKVVTVDVVNKKIPEKVTGQFEVVKVDANDKTKLLSGAEFEVYKDGKKVAELKTGESGKVMSPKLPLGE---YTVETKAP--------------AGYKLSDKWKVTIQNEKEVVKVEAGSLQIIKMDDKDQTKRLAGAEFTLDVKGNVVKEGITTDKSGTVKVDGLVPGEYTLEETKAPEGYKALEVIEVNVVANEVVKQDVLNEKVKEEITGQLEITKVDADINKKLAGAVFEIWKDGT-----------------------------KIDTLTSDENGKAISKELDPGDYILKEVQAPEGYELSDKEIEFTISNQKFEVVKLQITNKKETSKGPENPGTSHAQQLPATGHDMNYLPFIGFALVLLGIRLRFMTKNN.... 969
18 -25.600IDP05567 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2576 [Listeria monocytogenes EGD-e]  ali follow..  14 1060........................GQVDAIEIQAENEKDLGEAVLTKVDSET----------------NAKLSGAKFNLLN-----------------------------------------DSGEVIQTNLVSDENGEIRVQNL---------EPGDYAFQETEAPTNYDLATNTWPFTIVAGQTSATMVTAENNKTGKP---EVILVKQDSATGEGAVFDLMTADGAIVASNLTTDANGEITVTNLAPGK---YSFETKAPE---------ATDVWEFTIAPNQPEKITITAENTKLAPIGSVKIIKQDSENGVRLAGAEFSLIAENGETLQ----TNLKTDEAGELEVNYRIQ-ETKAPDGYQLESTPWQFEIVANDTSQVTVIAENAKLETGAVRLIKTDSETGTRLSGAVFSLLDESGKVI---------------------------QANLTTDENGEIFIDGLTPGNYSLKETKAPDGYELAEQPWNFQIVKGQVDAVIIKAENSPIIANGAISFEGDETDKPPQTGDKTSFPRVILGGSAVLMSLLYLRKKSS.... 1530
19 -17.500IDP06509 gene: fms20; LPXTG family cell surface protein Fms20 [Enterococcus faecium DO] AFK60478 [Enterococcus faecium DO]  ali follow..  11  352.......................................................................................................................................................................................................................................EKTGVDKNGNNVNDKMLQVGDTIQYRIKQKVNRLGVDLL----AVYDRFELIDNLPKEVNYVDAHVESGTNKKFDVSG---EVTYDKTKHQVKYAAKADTL------KNRMKYNGETYELVINVKVNELANQNSVAKNQGTSIINKVEKDTNIITVYFPKIPVK-GRNDGKKGTPTAPLNAGVQYLVTQKWHTKGVDAASDHYKQFSIQDPIEARLTYKEGSA-QVIDKSKGK--------------DITSEGTLTYDSNSRTLKWEASADFLSNNLLDGREIQLIFTAKTPLQSEKNIDNQA............................... 637
20 -15.300IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  13  135..............................................................................................................................................................................................................................................................................................................................EKANIQVNYVDETNQTLATSDTLSGKLGETYTTSYQVKETPTNATGTYTTNTETIQINYVYEKTAVEGANVSVEYINEATNESIAPTETLSGKIGTTFQAEVKEIDGYELSQVPSNQSGTYTDQTQSVIDEVAKDVTVTYKDTKGN-ILKGDIGSTFETEAKSF-KGYKLTKTPVEYVYSKDDAVITPPVTPVNPDKPIINQTGKTSTALQLPKTGDSENNLPLIIGVSLLISGVYIFTTRRKRVK. 439
21 -15.000IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  10  796....................................KANDYTLTSTKELKTPVIDSQKYHINDTYTTTGATIPG--YTLVAAPANQSGTFGAANVTVNYVYKADDYTLTSTYKDAN-------------GKELKAPVVDSKTYHTKDNYSTSAATIPGYTLVAAPANQTGTFNTSNVTVNYFYKANEYTLTSTFKNVQGTELKPAIVKYSTSGVTIPGYTLVATPSNKKGTFGASNVTVNYVYKANGYALGKDLKPLAIDTKTYNINDPYTATALNIPGYTLTTTPANE-VFGASDETVN-----------YVYKANDYTLTTTYKDANGKELQAPKVDAKTYHIQDTYKTTYTLVAIPKNDQGTFGANNVTVNYVYQTNDDAQGNELKATEVDAQKYHIHDTYTSKAAVIPG--YTLEKTPTNETGTFNASDIQVNYVYKA-------NDYQLTSTFKDQQGN-AKTYHIHEAY--TKARLIPGYSLVAAPVNYVYKKDAIIKPITPAKPTILTIASKVIKTKVVKQTLPKTGDDDAGLLNLLRLIGLVLILGVFLAVGSKKL. 1347
22 -14.500IDP06529 gene: acm; collagen-binding MSCRAMM Acm (Fms8) [Enterococcus faecium DO] AFK59905 [Enterococcus faecium DO]  ali follow..  10  1MKK--CRNIILSMLFIITNITSLIPVHVYADAGRDISSNVTSLTVDPTNITDGGNIKVK---SFDEKKQNIQPGDYLWI--------------------------SEGNIRGEGFQKEIPLMIENKNVGTLTVRKDSAQVVFNE----KNLDSVEGWGQFEIQARNVTDTGEENT------------------------------------GPFTVTSGDKTATVNVTKPASGSSSSVFYYKTGDMLPEDTKHIRWFLNIN---------NNGTYVEQPVKISDEIQSGQRLDPSTFEINQIHLGEQKVYR-QFLQDFPSATFNFSVTDNYIEITIPKNFVN---LRKIMVSYKTIIENPEQINFENHSEAWFKEFNKPAVDGESFNHTVKNI-RGELKIFKYINDTEIGIPNVTFELRRADEQP-----------------------IQGQSSILLTSNEQGEASIKGLQVGDYVVKEKEAPSGFKVQEQEIIYTVTEDNVPEYSTTIDGYNIKNSVPKQITNKSKSILPKTSSKKSSFAVIIGLLIVTICAGIFLQKYKK--V 721
23 -14.400IDP91912 hypothetical protein SpneCM_07064 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007064 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  336.......................................................................................................................................................................................................................................................................................................NVTLSDKDGKPINGKFGNTTVTNGKAQISLKNSQETAL-------------SYLPRDTHYKVEEV----ENSRTGYHVTYEKQEGTLSEDVQTIVTNHRLPTLSVTKVTGAFANLLQSFKITINVKDAQN-----KPLNGSYSAIVNNQKTTLQFTNGKATVDLKKDKTIKILDLPLNRYSIEEEASSRGYQVSYDKKEGTLDANK-----------------SATVTNNKN-SVPETGIDFLSSTLVLGVVLPLGGIFFIIVNRRK... 571
24 -14.100IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  12  234...............................................................................................................................................................................................................................................................................................................................................................DYSVNVQATDKAGNVSNTLNVTVH-------------TPAPVAGANITVNHLDSNGNKIAESDTL---------------------------------TGVVNSNYQSESK---KITG-----YTLETTPTATGFTDTPQTVDYIYKKDTVTPTPITVNNDNTNPSTSNSVEKTTYSSLPTTGDTDQSKSSTIFGALLLLISAPLLLFKKK... 415
25 -13.100IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  13  82.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KSEEGKKEAAQVQPKNAATKKEVAKPAVQGEKLPNT-ASNNVAMMALSACLVGIGTLFGLKRRNKVK. 147
26 -13.000IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  14  609...................................................................................................................................................................................................................................................................................KIGDYVWEDVDKDGVQGTDSKEKPMANVLVTLTYPDGTTKSVRTDANGHYEFGG--------------KDGETYTVKFTKVNGTTDGEKDSNGSSVTVKINGKDDMSLDTGFYKEPKYNLGDYVWEDTNKDNEPGIKDVKVTLKDSTGK-----------------------------IGTTTTDASGKYKFTDLDNGNYTV-EFETPAGYTPTVKNTTADDKDSNGLTTTGVIKDADNMTDVTVTLQNEKGEVI-KTDENGKYRFLDSGKYKV................ 892
27 -12.200IDP91037 gene: sdrD; Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein [Staphylococcus aureus subsp. aureus Mu3] SAHV_0560 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  12  579.........................................................DTNKNGVQELGEKGVGNVTVTVFD-----------------------------------------NNTNTKVGEAVTKEDGSYLIPNLP---------NGDYRVEFSNLPKGYEVTPSKQGNNEELDSNGLSSVITVNGKDNLSADLGIYKPKKNGIQDQDEKTVTLKDENGNVLKTVTTDADGKYKFTDLDNGN---YKVEFTTPEGYTPTTVTSGSDLGNYVWEDTNKDG---------KQDSTEKGISGVTVTLKNENGEVLQTTKTDKDGKYQFTGLEN-------TYKVEFETQVGSGTDEGIDSNGTSTTGVIKDKDNDTIDSGFYKPTYNLGDYVWEDTNKNDEKGISGVTVTLKDENDKV----------------------------LKTVTTDENGKYQFTDLNNGTYKVEFE-TPSGYTPTSVTSGNDTEKDSNGLTTTGVIKDADNKDVKVILLNEKGEVI-KTDENGKYRFLDSGKYKV................ 1075
28 -11.700IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  11 1264.......................GERPVITADATISYDKFANITEAKFLEDHATSSDGQSSTVITSNFQTATNFKTAMSYTVTLNAVNEDGISAEPVAVTVTINKEPAAALKADAEVSYAKNEAVTESDFFKDVHLEGTEAPSTAKATSVVDRSKTGDYTVTINATNDGAVSTPIEVIVHIEAESAPVITANAEVKYNKHEQTDERRFLYDSEAKIDEANVEIKTDFAEKVDINKVGTYTVTLTATNEDGQAANPVEVSVIVSDAAAEKVNVKYVDENGSEISETLTGNLDETFSIDAKSIAGYKCDATLSGVFSTVEQTVVFHYKAIKPGVVTIKYEDTNGKAVDEDKQITGEVEAEAQTVSGYSCRAIASGKITEEPQTITFTYSTATPSKKSGEITVQYVDESGKK------------------------------------------ADSKKVTGNIDDSYSVEAKAIEGYSVVGDDSAKGFTEKSQTVTFKYKKNTVSKDDPKVKGKTNQPSSTDTKLKVDNNSLPATGDTNMILAVLIGFNMLIVASIFLFRKPKTNQ. 1778
29 -11.600IDP05461 conserved repeat domain protein [Bacillus anthracis str. Ames] BA_1618 [Bacillus anthracis str. Ames]  ali follow..  8 1520........................ASSNTLSNVITTQINNATIIATK-----------------SVNTPNAAIGVTYTI-----------------------------------------------------AVTNTGNIPASATVLT---DGLGPGASFIPNSVTINNVSQPGLDPSLGIHLTTFITFQVKILAIPPSGTLTNNALVNYEYTVNPTETPAVGSTVTNTTVTPIVDAT-NKNASTTFATIGDTITFTSVVT----------TGNTTANNIVFTDSIPNGTTFVPNSFKINGVTVPNTNPQ-------------------------------NLNANASVTLSFQVNITTLPNPNPIPNQSSLQY-NEPPVSRTVQSNKTFTQVNSASVIATKT-ASSAFAAVGITYTT---------------------------------------TLTNSGNTTANTPV-----FIDI-LPAELSFVPDSISFQAIVGSIPAINPTLNQSSTTYSITVLLEN--------IGNTTATNIIFTHTVFIEDSV............ 1988
30 -11.100IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  14  609...................................................................................................................................................................................................................................................................................KIGDYVWEDVDKDGVQGTDSKEKPMANVLVTLTYPDGTTKSVRTDANGHYEFGG--------------KDGETYTVKFETP-GTTDGEKDSNGSSVTVKINGKDDMSLDTGFYKEPKYNLGDYVWEDTNKDNEPGIKDVKVTLKDSTGKV----------------------------IGTTTTDASGKYKFTDLDNGNYTV-EFETPAGYTPTVKNTTADDKDSNGLTTTGVIKDADNMTDVTVTLQNEKGEVIGTTDENGKYRF........................ 882
31 -11.100IDP05443 hypothetical protein lmo0463 [Listeria monocytogenes EGD-e] lmo0463 [Listeria monocytogenes EGD-e]  ali follow..  19  8........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GMFLL----SPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQHMLPKAGDTVTN-YTLLGLVLVLIWLIMQRKRKKKE.. 93
32 -11.100IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  10  361.....................................................................................................................................................................................................................................................................................................................DGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSV---AAAPVTVKYLNEEGKILTASDNLTGNV-----------DDPYQTKAKEFAGYTLDESKLPTNASGVFKTNAQTV-------TYVYKTIPASIKAHDSTMNVGDTWSAKDNFDSAVDSLGVVPFDEVKVDGSVDTTKAGVYPYSFAGDSVTIKVTPSTQQTPTKQSGTLKIKATHQEQPIVAGNLKLPTTGDN-SVLYSIFGFITVCLSFVLFFRLKKQKN. 625
33 -10.700IDP05371 conserved repeat domain protein [Bacillus anthracis str. Ames] BA_3601 [Bacillus anthracis str. Ames]  ali follow..  11 1383.......................TTNSSNTTVVTIPLPPPGEVTATK-----------------TVDVAAGAVGLTYTV-LISNVGIIPVADVFFQDVIPEGTTFVEGSVTIGGVQQLGLNPEIGFTVTPLLIAGGSIEITFQ---------------VTITEIPDNEVILNDA------------------------------DVTFTSQPNPQEPPITETILTNLVVTTINIAFVFPLKLVDKEVATVGEILTYDVLIF----------FGTVPATNVQYSDVLPSSIAFEPNSVTIDGVLQPGFNPN-------------------------NGFPLPDINPGESVEVTFQVTVVSVPSNGTIVNTANVTGSFVLVPGEPPVIVTGPSNTTL-QFNVIKQ-VNRAATLVGLTYTVQITNTGTVTANDVQ--IDTISAGASFVPNSVTINGALQPNLNPITGFGVGDIPVGTFQATVTNIPASGTITNVA---NITGSCTLVPGEPPVVVTEPSNTTITSINRGRFSVIKSGDTLTYSVQV-G.................... 1826
34 -10.400CPX_91689_91672 Complex of C4BPA_HUMAN with ARP4_STRPY [Undefined organism]  ali follow..  10  797.............................................................................................................................................................................................................................................................................................................................................................KQISDASRQGLSRDLEASREAKKKVEADLAALTAEHQKLKEDKQISDASRQGLSRDLEASREAVEADLAEANSKLQALEKLNKELEEGKKLSEKEKAELQARLEAEAKALKEQLAKQAEELAK----LKGNQTPNA-------------------------KVAPQANRSRSAMTQQKRTLPSTGETANPFFTAAAATVMVSAGMLALKRKEEN.. 984
35 -10.300IDP91950 beta-N-acetylhexosaminidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006639 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  14 1020...............................................................................................................................................................................................................................................NRNKQAELDTLVANLKAALQGLKPAATHSGSLDENEVAANVETRPELITRTEEIPFEVIKKE-NPNLPAGQENIITAGVKGERTHYI-------------SVLTENGKTTETVLDSQVTKEVINQVVEVGAPVTHKGDESGLAPTTEVKPRLDIQKEEIPFTTVTRENPLLLKGKTQVITKGVNGHRSNFYSVSTSADGKEVKTLVNSVVAQEAVTQI------------VEVGT--VTHVGDENGQAAIAEEKPKLEIPSQPAPSTAPAEESKALPQDPAPVVIEK--KLPETGTHDSAGLVVAGLMATLAAYGL---TKRKED. 1312
36 -9.810IDP02471 hypothetical protein lmo0880 [Listeria monocytogenes EGD-e] lmo0880 [Listeria monocytogenes EGD-e]  ali follow..  10  1MKKRWLVFAIICLIITGFL------SPKAEAATDYGSSFFTNVSLQNQNGEQATNFKENSKVRVAVITQPVASGETMTL-TIPDQ-------------------------KLINYGGFPLMDSQGNTIANATIDQVTGTITLTFTDYVNTHTDLSGSLFY--NATFNSKNIQTDQVNPIAFPVKNTTQTVTPYISKVNSGGGTGSPTIVFKQGRMDDKDL-------------------------------SILHWTVTLN----------NALTPIDNAVYTDTLGSGQNLLGSATIKYRDANKKVIATNIQPIALDADRNFELSIGAL--------------NNQSVVITYDTKITTK---QKSYTNKATLSGDNLDAVSRNATVN------------DYGSGGQGTGTPPAPPVKEEPPFIPAEKQPIEKTVETDFGPLEIVKDSEQNGKIKVIYKVKDGDTLPGVANKFDVSVAEIKDWNNLTSDTLQAGQKLQLTIEKTLLSKITVQKVTSTTRVDGVVKATGVLPHTGDSNPFIPFVTGLSL-----------GFTFGR 460
37 -9.370IDP05200 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2714 [Listeria monocytogenes EGD-e]  ali follow..  8  118..............................................................................................................................................................................................................................................................................................................................................................................................AANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVENFGEGTTTADKDGYFYAE-SEEVTYQVPAKKQ-------NEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK... 315
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.