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Query: IDP90254 gene: ie1; IE1 protein [Human herpesvirus 6] AAK67494 [Human herpesvirus 6], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MESAKDTTSTSMFILGKPSGNNMESNEERMQNYHPDPVVEESIKEILEESLKCDVSFESLLFPELEAFDLFIPESSNDIASKNVSYSSNVEEGASDEFKTLVAQSVGNCIQSIGASVKAAMKQEQSNMEDNLINSAGLLTLHRSMLERLVLEQLGQLININLLSSASSQFVSCYAKMLSGKNLDFFNWCEPRFIVFACDKFDGLVKKIASESRDLLMDLKANMNNQFITALKNIFSKAYVALDSGKLNMVATSLLLMAHNKEMSNPEISNKEFCKQVNLLKQELLESRNEIIENHVKNMKMFQEFANKQMNQIFMDNCDKTFLKIHINCKNLITAAKNIGIAVLQSIVLCSNEFSWQYLKPRRHQFKITMMNMITHACECIETIYDDTGLIKPLTSSDIMEGYIAINKNRESSICDLNIDPSESILLELADFDEHGKYSEESSIESIHEDDDNVDYLKYMEVQSPTDNNIPTPSKNNESPTRQKLTNIHEKDVGKMYPDTPSPDVPGKSKEAKTFIEYSRQIGKEQTSPNCVCTASVTDLGGPDNFKSITGLESGKHFLIKKLLETQPDSVVVETGSGQQDILAYSPDKRSQTKEWIQEKGSNSKCTETLPGMTFTNSATPVKSHGAIQDTLNPESKLDKEMEAVESLVNLCDGFHDNPLISEMITFGYETDHSAPYESESDNNDETDYIADCDSTVRTNNIHMNNTNENTPFSKSLYSPPEVTPSKEDHKTEKIVAVSQKCKSKKRTAKRKNVPIKPSKSKKIKLDRLPETTNVIVISSESEDEEDGNNIIDKSMLEKTIKSEPNSESSSESDDCTSEDNYLHLSDYDKVINNGHCQSKGFPSPVFTIPIRSMPGTHDIRNKFVPKKHWLWFMRKTHKVDNCVIHSSAKMNVKNDSDVTEANHCFINHFVPIKTDDEEYEKENVSYTYSKIQDSKTDLEDITPTKKLITEMVMENFMDLTDIIKHGIAKHCQDLSSKYTVITHTACEKNLNVANSQNLVTAETQIFDPQGTGNNSPILNIINDTTCQNDENRCTEGTSNDNEKCTIRSDCNSDKMEVFKLDGYPSDYDPFEENAQIYLast
1 -205.000IDP90254 gene: ie1; IE1 protein [Human herpesvirus 6] AAK67494 [Human herpesvirus 6]  ali  100  1MESAKDTTSTSMFILGKPSGNNMESNEERMQNYHPDPVVEESIKEILEESLKCDVSFESLLFPELEAFDLFIPESSNDIASKNVSYSSNVEEGASDEFKTLVAQSVGNCIQSIGASVKAAMKQEQSNMEDNLINSAGLLTLHRSMLERLVLEQLGQLININLLSSASSQFVSCYAKMLSGKNLDFFNWCEPRFIVFACDKFDGLVKKIASESRDLLMDLKANMNNQFITALKNIFSKAYVALDSGKLNMVATSLLLMAHNKEMSNPEISNKEFCKQVNLLKQELLESRNEIIENHVKNMKMFQEFANKQMNQIFMDNCDKTFLKIHINCKNLITAAKNIGIAVLQSIVLCSNEFSWQYLKPRRHQFKITMMNMITHACECIETIYDDTGLIKPLTSSDIMEGYIAINKNRESSICDLNIDPSESILLELADFDEHGKYSEESSIESIHEDDDNVDYLKYMEVQSPTDNNIPTPSKNNESPTRQKLTNIHEKDVGKMYPDTPSPDVPGKSKEAKTFIEYSRQIGKEQTSPNCVCTASVTDLGGPDNFKSITGLESGKHFLIKKLLETQPDSVVVETGSGQQDILAYSPDKRSQTKEWIQEKGSNSKCTETLPGMTFTNSATPVKSHGAIQDTLNPESKLDKEMEAVESLVNLCDGFHDNPLISEMITFGYETDHSAPYESESDNNDETDYIADCDSTVRTNNIHMNNTNENTPFSKSLYSPPEVTPSKEDHKTEKIVAVSQKCKSKKRTAKRKNVPIKPSKSKKIKLDRLPETTNVIVISSESEDEEDGNNIIDKSMLEKTIKSEPNSESSSESDDCTSEDNYLHLSDYDKVINNGHCQSKGFPSPVFTIPIRSMPGTHDIRNKFVPKKHWLWFMRKTHKVDNCVIHSSAKMNVKNDSDVTEANHCFINHFVPIKTDDEEYEKENVSYTYSKIQDSKTDLEDITPTKKLITEMVMENFMDLTDIIKHGIAKHCQDLSSKYTVITHTACEKNLNVANSQNLVTAETQIFDPQGTGNNSPILNIINDTTCQNDENRCTEGTSNDNEKCTIRSDCNSDKMEVFKLDGYPSDYDPFEENAQIY 1078
2 -9.990IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  1512...................................................................................................................................................................................................................................................................................................................................................................................................................................EEAGEKSDKKKKKKEKKEKKEKKEKKEKKEKKEKKKKKGGETAAEPEEASAVLAPPPVPVPAAAIPSVLLPADSEDGEKEQPKEKKKEKKEKKKKKDGETDAEPEEASAVLAPPPVPVPAAAIPSILLPTDGEDGEKEKTKEKKTEKKKEKHTEKKHKKKSEALPESETTAVVTVTPGEEDETSPLVPVPSSIASSEAPEPPASTRVTPAPEPKAKPGLSMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTP--QIFVNSQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQLD....................................................................................................................................................................................... 1985
3 -9.440IDP06395 gene: ORF50; ORF50 [Human herpesvirus 8] YP_001129401 [Human herpesvirus 8]  ali follow..  15.........................................................................................................................................................VESFVGLS-LKAQLYQCVLLINDAYETIY-DLN-----RVVEDVC-------IRIMKECSKLLCGLFTDIN------MFNLFC-------------------FFRASRMRTKGAAGYNVPCA---EASQGIIR----LTERIL---------------------TEKAFL-----CSG-VSLPPAICKLLHEIYTEMKAK-AWRRLVCNRRP----IMILTSSLLKLYNTYDTAGLLSEQSRALCLLVFQPVYLPRIMAPLEIMTKGQLAPENFYSITGSAEKRRPITTGKVTGLSYPGSGLMPESLILPILEPGLLPASMVDLSDVLAKPAVILSAPALSQFVISKPHPNMPHTVSIIPFNPSGTDPAFISTWQAASQNMVYNTSTAPLKPATGSSQTVSVKAVAQGAVITATTVPQAMPARGTGGELPVMSASTPARDQVAACFVAENTGDSPDNPSSFLTSCHPCDPNTVIVAQQFQPPQCVTLLQVTCAPSSTPPPDSTVRAPVVQLPTVVPLPASAFLPALAQPEASGEELPGGHDGDQGVPCRDSTAAATAAEATTPKRKQRSKERSSKKRKALTVPEADTTPSTTTPGTSLGSITTPQDVHATDVATSEGPSEAQPPLLSLPPPLDVDQSLFALLDEAGPETWDVGSPLSPTDDALLSSILQGLYQLDTPPPLRSPSPASFGPESPADIPSPSGGEYTQLQ......................................................................................................................................................................................................................... 660
4 -9.360CPX_91717_04326 Complex of VINC_HUMAN with IPAA_SHIFL [Undefined organism]  ali follow..  18 1222...AKSEISNVLYSLVHQNGLNFE-NEKGLQK-----IVAQYSELIIKDKLSQDSAF---------------PWSAKN----------------------------------------KKLHQLRQNIEHRL----ALLAQQHTSGEALSLGQ--KLLNTE---------VSSFIK------------------------------------NNILAELK--LSNETVSSLK-VDAQAKLAFDSGKLSRDLNTVAVF--------PELLRK-----LNDILEDIKDSHNEVIHYHINN--------NRTYNRVF-DN-DNSY---HENPEN--TSQTN---------LLSRNGNS---LNPQR---KVT--SVLPHS---ISDTVQTFA-----------------NNSALEKVFNHTPDNSDGIGSDLLTTSSQERSANNSLSRG--HRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKSSASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLISLIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANIRNYVTETNADTIDKNHAIYEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLSK...................................................................................................................................................................................................................................................................................................................................................................................................................................... 1760
5 -9.030IDP92669 gene: rne; ribonuclease E [Shigella flexneri 2a str. 2457T] NP_836789 [Shigella flexneri 2a str. 2457T]  ali follow..  10  112.KGAALTTFISLYLVLMPNNPRAGGISRRIEG-------RTELKEALAS----------LELP--EGMGLIV---------RTAGVGKSAEA--QWDLSFRLK-----------EAIKKAAESRPA---------PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVQHIAALGRPDFSSKIKLYTGEIPLFSHYQIES-SAFQREVRLPS--IVIDTAIDINSARATRGGDI-EETAFNTNLEAADEIARQLRL----RDLGG-DMTPVRHQRAVNRLREAVRQDRARIQISHISRLEMSRQRLSPSLGESSHHVCPR--------CSGTVRDNESLSLSILRLI---------EALKENTQEVHAILLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATVVAPAPKAATATPAAGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRKPRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETT................................................................................................................................................................................................................................................................. 913
6 -8.740IDP92682 hypothetical protein NGO1785 [Neisseria gonorrhoeae FA 1090] YP_208816 [Neisseria gonorrhoeae FA 1090]  ali follow..  110.KGAALTTFISLYLVLMPNNPRGGGVSRRIEG-------RQELKAAMAQ----------LDIP--NGMSIIA---------RTAGIGRSAEE--EWDLNYLKQ-----------QAIEEAGKAHHD---------PYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVDQVAEFMSYVM-GRLKLYEDHTPLFSRFQIEH-SAFSRSVSLPS--IVIDVSIDVNSARATRGADIEDTAF------KTNMEAAE---VARQMRLRD-DMENPKHQRDVNVLRDALKKDRARVQMGKLSRLELSRQRLKPALGESSHAACPR--------CTGVIRGIESTALHVLRMVQEEAMKDNTGEVRAQVPDVATFLLNEKRAELFAMEERLD-VNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREAAGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETEGQTGKRRRNGSRNERGQTAPETAAVAETAVQTAENTPPEPYTAEDKGSKPKSERNRRERDSRDAKERRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPLIATPVQTASSAVSNGDALIYDAAEKIRRAAADILPEGAAPKAAAQEMPSETATFTAAAEQARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEAATVPAEEMIQVETR.............................................................................................................................................................................................................................................. 917
7 -8.690IDP92677 gene: rne; RNase E [Shigella flexneri 2a str. 2457T] AAP16595 [Shigella flexneri 2a str. 2457T]  ali follow..  10  109.KGAALTTFISLYLVLMPNNPRAGGISRRIEG-------RTELKEALAS----------LELP--EGMGLIV---------RTAGVGKSAEA--QWDLSFRLK-----------EAIKKAAESRPA---------PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVQHIAALGRPDFSSKIKLYTGEIPLFSHYQIES-SAFQREVRLPS--IVIDTAIDINSARATRGGDI-EETAFNTNLEAADEIARQLRL----RDLGG-DMTPVRHQRAVNRLREAVRQDRARIQISHISRLEMSRQRLSPSLGESSHHVCPR--------CSGTVRDNESLSLSILRLI---------EALKENTQEVHAILLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATVVAPAPKAATATPAAGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRKPRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETTHPEVIAAAVTEQPQVITES.............................................................................................................................................................................................................................................. 929
8 -8.600IDP92672 gene: rne; ribonuclease E [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] YP_150903 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150]  ali follow..  112.KGAALTTFISLYLVLMPNNPRAGGISRRIEG-------RTELKEALAS----------LELP--EGMGLIV---------RTAGVGKSAEA--QWDLSFRLK-----------EAIQKAAESRPA---------PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVQHIAALGRPDFSSKIKLYTGEIPLFSHYQIES---FQREVRLPS--IVIDTAIDINSARATRGGDI-EETAFNTNLEAADEIARQLRL----RDLGG-DMTPVRHQRAVNRLREAVRQDRARIQISHISRLEMSRQRLSPSLGESSHHVCPR--------CSGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSVATAKKDNVAAEQPAQQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQAQQQNAEARDTRQQETAEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRKQRQLNQKVRFTNSTVVETVDTPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQDDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRYPIVRPQETQVVEEQREADLALPQPVVAEPQVIAATVALEPQASVQAVENVAVEPQTVAEPQAPEVVKVETTHPEVIAAPVDEQPQLIAE.............................................................................................................................................................................................................................................. 933
9 -8.450IDP04550 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0460 [Clostridium perfringens ATCC 13124]  ali follow..  20  474.......................................................................ILEKTKEISNGNLDSKDDEDCGFFNPM----RDELNNIQKGFKAAVDEEVKSQR--MKTELISNVSLKT------------PLTSIIAVDLLKGEEDE-RKAYLETLERKS---------RLKHLIEDLFE--VSKATTGNINL-VDI-SYLMKQVVLELDDKINEAGLDM---RLSLPEEKVILPLDGQRTYR--FEN-------NVVKYALIKEGRENVDVIIKNIS--ADEITFNINEIS-----DRFVR-----KSRNTEGSGLGLAIVKSFVLQGGKFH---IEVDGDLFKAII.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 738
10 -8.280IDP92676 gene: rne; ribonuclease E [Pseudomonas aeruginosa PAO1] NP_251666 [Pseudomonas aeruginosa PAO1]  ali follow..  110.KGAALTTFISLYLVLMPNNPRAGGISRRIEG-------RNELREALNG----------LNAP--ADMGLIV---------RTAGLGRSTEE--QWDLDYLLQ-----------SAIKEASGERGA---------PFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDANFIRQVMPQYASK-VKLYQDSVPLFNRFQIES-TAFQREVKLPS--IVIDVSIDINSARATKGGDI-EETALQTNLEAAEEIARQLRL----RDIGG-DMTPAKNQRAVERVREALEADRARVQVGRISRLEMSRQRLRPSLGETSGIVCPR--------CQGIIRDVESLSLAILRLI---------EALKDRTAEVRARV--LLNEKRNAITKIELRTRARIFILPDDHLEPHFEVQRLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREGREERAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREERQPREDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSGELEGSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETDASTSEAVETQGADSEANTGETADIEAPVTVSVVRDEADQSTLLVAQATEEAPFASESVESREDAESAVQPATEAAEEVAAPVPV........................................................................................................................................................................................................................................ 922

FFAS is supported by the NIH grant R01-GM087218-01
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Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.