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Query: IDP90326 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_351 [Chlamydia trachomatis D/UW-3/CX], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRFFPLFIGVLLAHTLPSEGLSHQQAVQKKISYLSHFKGITGIMDVEDGVLHIHDDLRLQANKAYVENRTDCGIKIVAHGNVMVNYRGKILICDYLEYYEDTDSCLLTNGRCSLYPWFIGGSTITISPSSIIIHKGYISTSEGPQKHICLSGDYLKYSSDSVLSMGPSRLSICNTPVLLLPQISIMPMEIPKPPITFRGGSGGFLGSYLGVSYSPISKKHCSTTLFLDGFFKHGIGLGYNMRFSSQENPSNAINIKSYYAHRLAIDSSGAKDRYRLHGDFTFSKERAHLAGEFHLSDSWETVVDIFPNNFSLKNTGPTEVSLSWRDNNLFGKMTSSVKVNSFQNVKQELPQAILHHRPVRIRRSRIFLENRLEAGFLDFHFSSNIPGSNFSSWRFSSAHKVYRGLVLPIGTLTPSLSGTAIYYTRMLSPNAAHCQLSGSLSFDYRVALQKEYRHARHIVEPFCSFLKTTRPVLSSDEPHIFSIKDAFHSINLLHVGLESKVLNKHSTPSHLKLWTTYIFDEPHAKDTFPKTACWFSLPLTLQNTLSLDAEWIWKKSRWDHLNVIWEWILNDNLGLTLEFLHRSKYGFIKCAKDNYTLDVSRSLDTLLASPLSDRRNLITGKLFVRPHPHWNYNLNLRYGWHRPDSPSYLEYQMILGHKIFEHWQLFSVYEKREADKRCFFYLKLDKRKQKHRHPFGLast
1 -180.000IDP90326 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_351 [Chlamydia trachomatis D/UW-3/CX]  ali  100  1MKRFFPLFIGVLLAHTLPSEGLSHQQAVQKKISYLSHFKGITGIMDVEDGVLHIHDDLRLQANKAYVENRTDCGIKIVAHGNVMVNYRGKILICDYLEYYEDTDSCLLTNGRCSLYPWFIGGSTITISPSSIIIHKGYISTSEGPQKHICLSGDYLKYSSDSVLSMGPSRLSICNTPVLLLPQISIMPMEIPKPPITFRGGSGGFLGSYLGVSYSPISKKHCSTTLFLDGFFKHGIGLGYNMRFSSQENPSNAINIKSYYAHRLAIDSSGAKDRYRLHGDFTFSKERAHLAGEFHLSDSWETVVDIFPNNFSLKNTGPTEVSLSWRDNNLFGKMTSSVKVNSFQNVKQELPQAILHHRPVRIRRSRIFLENRLEAGFLDFHFSSNIPGSNFSSWRFSSAHKVYRGLVLPIGTLTPSLSGTAIYYTRMLSPNAAHCQLSGSLSFDYRVALQKEYRHARHIVEPFCSFLKTTRPVLSSDEPHIFSIKDAFHSINLLHVGLESKVLNKHSTPSHLKLWTTYIFDEPHAKDTFPKTACWFSLPLTLQNTLSLDAEWIWKKSRWDHLNVIWEWILNDNLGLTLEFLHRSKYGFIKCAKDNYTLDVSRSLDTLLASPLSDRRNLITGKLFVRPHPHWNYNLNLRYGWHRPDSPSYLEYQMILGHKIFEHWQLFSVYEKREADKRCFFYLKLDKRKQKHRHPFG 697
2 -10.100IDP06080 hypothetical protein jhp1477 [Helicobacter pylori J99] NP_224195 [Helicobacter pylori J99]  ali follow..  103........................................QQDLYFFPNGVTYKRSDSSFWSETGIYNHKEQN---FKGKGRFILTSKDSKVEGLDISYSHALAIIEAQSIQANLFL---EIKQSQKEKKKFPTFKGGF.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 197
3 -9.900IDP00563 gene: hmuR; hemin receptor precursor YPO0283 [Yersinia pestis CO92]  ali follow..  10..RWSSLSLAIACTLPLATQAADTTTTQTSSKKHSTDTMVVTATGNERSSFEAPMMVTVIEGNAPTSQTAATAADMLRQVPGLTVTGSG----------------------RTNGQDVVMRG-----KQGVLTLVDGVRQGTDTGHLNSTFLVKRIEIVRGPAALLYGS---LGGVIAYETVDAADMLQPGQNSGYRVYSSAATGDHSFGLGASAFGRTDDLDGILSFGTRDIGNIRQSNGFNAPNDETISNVLAKGTWQIDSI--QSLSANLRYYNNSAIEPKNPQTSAPSSTNVMTNRSTIQRDAQLRYNIKPLDQEWLNATAQVYYSEVEINARPQGSAEEGREQTTEGVKLENRTRLFIESPASHLLTYGTETYKQEQTPGGATESFPQAKIRFSS-LQDEITLRDLPVSILAGTRYDNYSGSSDGYADVDADKWSSRGAISITPTDWLQAFR---APTMGNYWVPNPNLKPETNETQE-SDLLMAEDDLQFKV-SYFDTKAKDYISTRVDMQAMTTTSVNIDQAKIWGWDASMSY-KTALFNWDLAYNRTRGKNQNTDEWLDTINPDTVTSIVDVPVANS-------SVGWIGTFANRSSRVSSSTPQAGYGVNDFYVSYKGQEAFK-GMTTTMLLGNVFEKEY--YTPQGIPQDGRNVKFFVSYQ.......................... 675
4 -9.880IDP91317 Outer membrane receptor protein [Vibrio vulnificus CMCP6] VV2_0843 [Vibrio vulnificus CMCP6]  ali follow..  17FKLHALSAVVMGLCASGQAYAQTESTNSNKKEEM---------------------PVVVVIGEKTE-RTIYDTSSSVQVFDQETIDNTP----GATEIDDLLQLIPNMVDSGQGNSMPTVRG-------DGSGPSVGGLASFAGTSPRLNMSIDGRSLTYSEIAFGPRSLWDMQQVEVYLGPMKTNDPTHHFESAVKAGIGERNYSQTAAMIS---IIQDELAFRLSFDQQKKESFSLRGKLLYEPSSMDGFKTTLGVSLMDSRSSESINIEGANAFRAVFETSSLSTVWDVSWQLNDQFTFESNVVYADFTNERLTYPVDKFDFSTSGSEYHVEPILKYLSSNGRLSALFGARYYSSKQNSGSNPMKGSKDTQSLFAEMTYAITQSIDVTLAGRYEKEHIFNIDYDETLGVFLPKFDIAYK-PANDQTFGFKVAKGYNAGGAGLGFNSITSGGFKPYEFKEEYLWNY---------EFYTRHRLGH-------SLELLTNTFYNDFDDMQMTQLLANGDVFITNLDEAKTYGVEVGTRWYATDSLELFANLGLLKTEYKEVNGT-ELERAPNITGNLGGQYSFFDGFELSANAAYTGDYYSDRSN-TAITTIDAYWVANAQLAYV-FENGRATLFAT........................................................... 650
5 -9.460IDP06071 gene: fecA_2; iron(III) dicitrate transport protein [Helicobacter pylori J99] NP_223461 [Helicobacter pylori J99]  ali follow..  7VKTPYFLASVVLTFWTFNSFMSAKDKHHFLKKVTTTEQKFSSSAPISWQSEEVRNSRTVISNKELKKTGNLNIENALQNVPGIQIRDATGTGVLPKISV-----RG-------------FGGGGNGHSNTNMILVNGIIYGAPYSNIELAIFPVTFQ--------------SVDRIDVI-------------KGGTSVQYGPNTFGGVVNVITKEIPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKYIGISAQGNWINGQKVQNYLLDAIYKINATNTFKAYYQYYQYNSYHPGTL----SAQDYAYNRFINERPDNQDGGRAKRFGIVYQ---NYFGDPDRKVGGDFKFTYFTHDMSRDFGSNQYQSVYMSGQNKILPFKGKGEISAKNPNCGLYSYSDTNSPCWQDNIRRSVVNAFEPKLNLIVNTGKVKQTFNMGMRFLTEDNNFNNYTAVYASDEINFNNGMLTITPGLRTFLNYEKKDAPPFKVGQTPKTTKERYNQWNPAVNVGYKPIKELLFYFNYQRSYI-QFSNIGNFVGTSTDYFQIFNVMEGGSRYYFNANYFVIFANHYFTGRYGDNREPVNARSQG----VELELYYTPIRGLNFHAAYTF.......................................................... 638
6 -9.410IDP91374 outermembrane lipoprotein [Vibrio vulnificus CMCP6] VV1_1919 [Vibrio vulnificus CMCP6]  ali follow..  13  1MKNIGLLLLASLFLAGCTTPTHLPLSGSQAIEIRIDDQFNPKGTVTGNEGNDLKNNAKELDADTIFVIAPQAFVTSFSLLGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 106
7 -9.180IDP00490 putative iron-siderophore receptor YPO1537 [Yersinia pestis CO92]  ali follow..  85..............MSTATGLNISARETPQSVSVLTKQRMRDQNLNSVESAVNNITGISVRSDRFGFTSRGMAVNNVMRDGDTDMFDRIEVVRGAAGLMAGPGNPSAVINL-VRKRPTQDFRGSVSAGVGSWEKWRTALDISGPLNSEGSVRGRFVTAYEDKNSFVN----RYDQSKNPFYGILEIDVTPNTLFTFGADTQRTLTRGGMFGLPLFNSAGGRTNY--------AQSATTASDWASAETRTQTLFSSLQHNFDNGWNIKGTFTFDNDKLRQDVMWPTGYPDPQTNIGMRPGSLSLIDGARRQQNYDIQVNGQYSLFGRQHQLGLGWNRQRQNIDNDYYLATCNATRTCPDLGDFTQPGWQYPKPVWSDKRAYGSKGRSDQSSYVVTQLSLIDPLTL-----------ILGGRLTTWETRGDNFGTPQNARYKNEFVPYSGLTYDINR----LSVYTSYTEIFNPENRRDR----TLLAPVSGQN-YEAGLKGVAFDNS-------DYSLAVFEIRQNNMPVPDTT-------APRLPDNSQPYFAVDGTKTRGFEAEVSGKMTEDWNISAGYTQYNVKLPSSNTQTPVTPVTPRKVLKLFTTTLPGQLSDLTLGGGVNWQSQIARNLSSPIGIQQIGQGSFAIYSLMSRYQFTPQLSLTVNLDNLFNQHYYT................. 729
8 -8.500IDP04415 gene: icsA (virG); IcsA (VirG), outermembrane protein exposed to the bacterial surface by a C-terminal autotransporter domain and involved in the movement of intracellular bacteria by binding to N-WASP [Shigella flexneri] CAC05837 [Shigella flexneri]  ali follow..  10  608.................VIVTGNMTLEKNGHVILNNSSSNVGQTYVQKGNWHGKGGILSLGA---VLGNDNSKTDRLEIAGHA---SGITYVAVTNE--GDKTLEGVIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTASGLNTN--KWYLTSQMDNQESKQMSNQESTQMSSRRAS---------QLVSSLNLGEGSIHTWRPEAGSYIANL------IAMNTMFSPSLYDRHG------------------------IVDPTTGQLSETTMWIRTVGGHNEHNLA---DRQLKTTANRMVYQDILKTNFTDHDGLHVGIMGAYKTHNKYTSYSSRGTVSGYTA-------LYSSWFQDEKERTGLYMDAWLQYSWFNNTKGDGLTGEKYSSKGITGALEAGYIYPTI-LYLNPQVQITRHGVKANDYIEHNGTMVTSSGGNNIQAKL-----GLRRKFEPFLEVNWKWSSKQYGVIM----HQIGNRNVIELKTGVGGRLADN--------LSIWGNVSQQLGNNSYRDTQGILGVKYT............................................................................................................................................................ 1101
9 -8.240IDP91015 gene: psn; pesticin/yersiniabactin outer membrane receptor [Yersinia pestis KIM 10] y2404 [Yersinia pestis KIM10+]  ali follow..  1MKMTRLYPLALGGLLLPAIANAQTSQQDESTLVVTASKQSSRSASANNVSSTV------VSAPELSDAGVTASDKLPRVLPGLNIENSGNMLFSTISLRGVSSAQDFYNPAVT----LYVDGVPQLSTNTIQALTD----------------VQSVELLRGPQGTLYGKSAQGGIINIV--P------DSTPRGYIEGGVSSRDSYRSKFNLS---IQDGLLYGSVTLLRQVDDGDMINP-----------------------TGSDDLGGTRASIGNVKLRLAPDDQPWEMGFDIKGRKLSISDGSPDPYMRRCTDSQTLSGKYTTDDWVFNLISAWQQQHYQRWNQDVQELRAATLGDA---FGLYRREKLNSAYDMPTMPYLSSTGYTTAETLAAYSDLTWHLT----RFDIGGGVRFSHDKSSTQYHGSMLGNPFGDQGKSNDDQVLGQLSAGYMLTDDWRYTRVAQVPTAGLDAKPFVA----EKSINYELGTRYETADVTLQAADMQLYSGPVRMQTLSNAGKADATVELEAKWRFAPGWSWDINGNVIRSEFTNDSELYHVPFVPRYGAGSSVNGVIDTRYGALMPRLAVNLVGPHYFDGDNQLRQGTYATLDSSLGWQATERMNISVYVD........................................................... 636
10 -8.230IDP02385 gene: cfrA; putative iron uptake protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0755 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  1MKKICLSVCAIGLLSSNAISQNVELDSSIVSAS-----GFTQDIKEAPATINV------ITKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLV----------LIDGRRQGIGGEVGPNGFNEISNSFLPPIS---SIERIEVIKGPMSTLYGS--ALGGV----VNIITKKVSDKWETSVSLDALLNENKGPLMNDKLGLTLRNNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKQGQLGTITSPGRGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNDGREVVGQSTQPFLGENRDIVAEDIILDTKSVIPLGQSHIGGEYRLEKMQDKIASPTNFDQYLLAIFAEDEYSIK-----------------------------------DLRLTFGARYNHHEI---GNNVSPRAYVVYNPTNELTLKGGVSGFR---TPYANRLINGTYSYSGQGRFPTYGNPDLKEETSLNYEIAAIYNNDL-----------FYVSATGFLTNFKDKISSQSYNNSEPIP-RCSRAINHGKVEYKGVELGAGISPLDNLNVNFAYTYLDTEV-----------KEAQDRSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGKDIFLASMGVRYDINKQWSINAAIYNLFDKS.................... 659

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35