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Query: IDP90541 3-dehydroquinate dehydratase [Vibrio cholerae O1 biovar eltor str. N16961] VC0297 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTAKSRILVLNGPNLNLLGLREPTHYGSQTLEQIVAILRDQAQKADIELEHLQSNREYELIEAIHQAFGKVDFIIINPAAFTHTSVALRDALLGVAIPFIEVHLSNVHAREPFRHHSYLSDKAQGVICGLGAQGYEFALSAAIRALQAKQLast
1 -82.600IDP90541 3-dehydroquinate dehydratase [Vibrio cholerae O1 biovar eltor str. N16961] VC0297 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali  100  1MTAKSRILVLNGPNLNLLGLREPTHYGSQTLEQIVAILRDQAQKADIELEHLQSNREYELIEAIHQAFGKVDFIIINPAAFTHTSVALRDALLGVAIPFIEVHLSNVHAREPFRHHSYLSDKAQGVICGLGAQGYEFALSAAIRALQAKQ 150
2 -81.200IDP90771 gene: aroQ; 3-dehydroquinate dehydratase [Yersinia pestis CO92] YPO3660 [Yersinia pestis CO92]  ali follow..  70  1MSDKFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREPFRHHSYLSDIAVGVICGLGADGYNFALQAAVNRLSKSN 150
3 -78.200IDP02836 gene: aroQ; 3-dehydroquinate dehydratase [Bacillus anthracis str. `Ames Ancestor`] GBAA4423 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  45  2....KKVLLVNGPNLNRLGVREVNVYGKGTLATLEADMKQEAEAMGVELECFQSNHEGAIIDRIHEAEDIYEGIILNPGAFTHYSYAIRDAIASISIPVIEVHISNIHQRESFRHESVTAAVCAGQIVGFGFYGYKLALFALMEKLREA. 146
4 -75.200IDP91202 gene: aroQ; 3-dehydroquinate dehydratase [Bifidobacterium longum DJO10A] BLD_0610 [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]  ali follow..  40  2....TKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVILPLMEVHISNPSARDEFRKRSVISPVATGTITGMGFYGYKLALDAVAHLLSE.. 148
5 -73.500IDP91207 3-dehydroquinate dehydratase [Bacteroides thetaiotaomicron VPI-5482] BT_2842 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  51  2.....RIQIINGPNINLLGKREPSIYGSVTFEDYLAELRKRYA--DLEIDYFQSNIEGEMIDCIQQVGFEVDGIILNAGAYTHTSIALQDAIRSVTSPVIEVHISNVHSRESFRHVSMIACACKGVICGFGLNSYRLALEALLGN..... 139
6 -7.800IDP04466 gene: ansA; L-asparaginase I [Yersinia pestis CO92] YPO2161 [Yersinia pestis CO92]  ali follow..  18  1MQKKSIYVAYTGGTIGMQRSDNGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYAPL-HIANDIQQNYDLYDGFVILHGTMAFTASALSFMLENLAKPVI.................................................. 113
7 -7.160IDP02121 Short-chain dehydrogenase/reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT0360 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  1MVNNSKTILITGCSHGGIGNLGHRVFASARQQKDVEALSQEGFET-YLIDVTNYEYIDNALADILNKTGGSLDVIFNNAGYGQAG-ALEDIDTKFLKQQFETNVFGLHNRKQGYGKIIQHSSVLGLVAMKYRGAYKYAIEGLTDTMRLE. 167
8 -5.900IDP00880 gene: purE; phosphoribosylaminoimidazole carboxylase catalytic subunit STM0534 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  5.NNPARVAIVMGSKSDW-----------ATMQFAAEIFEILDVPHHVEVVSAHRTPD-KLFSFAETAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILAQHD 141
9 -5.700IDP02536 gene: purE; phosphoribosylaminoimidazole carboxylase catalytic subunit [Yersinia pestis CO92] YPO3076 [Yersinia pestis CO92]  ali follow..  14  10.AAGVKIAIVMGSKSDW-----------ATMQFAADVLTTLNVPFHVEVVSAHRTPD-RLFSFAEQAEANGLHVIIAGAGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILA... 143
10 -5.530IDP04072 gene: purE; phosphoribosylaminoimidazole carboxylase,catalyic subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0896 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  2...SVQVGVIMGSKSDW-----------STMKECCDILDNLGIGYECEVVSAHRTPD-KMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQ... 133
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.