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Query: IDP90721 gene: aroE; shikimate 5-dehydrogenase [Yersinia pestis CO92] YPO1610 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLSRYNGSQWADAIDIKVKKMTRYLNKDTTVCISLAARPSNFGTRFHNFLYDALDLDYLYKAFTTNDLAAAIGGVRALGFRGCAISMPFKEAVIPMVDEMDPSAKAINSVNTLVNTGGYLKAYNTDYIAIAKLLQEYQVPVDNVFALRGSGGMAKAVAFALKNAGFKQGYIIATNEKTGKQLAEQSGYIYRPDMQNIQADMLINATPVGMAGGADADKLAFTETEVDRAKIVFDVVALPAVTPLIRYAQTQGKTVITGAEVFAIQAVEQFVLYTGIRPSQALFEQAAAYARGLast
1 -112.000IDP90721 gene: aroE; shikimate 5-dehydrogenase [Yersinia pestis CO92] YPO1610 [Yersinia pestis CO92]  ali  100  1MLSRYNGSQWADAIDIKVKKMTRYLNKDTTVCISLAARPSNFGTRFHNFLYDALDLDYLYKAFTTNDLAAAIGGVRALGFRGCAISMPFKEAVIPMVDEMDPSAKAINSVNTLVNTGGYLKAYNTDYIAIAKLLQEYQVPVDNVFALRGSGGMAKAVAFALKNAGFKQGYIIATNEKTGKQLAEQSGYIYRPDMQNIQADMLINATPVGMAGGADADKLAFTETEVDRAKIVFDVVALPAVTPLIRYAQTQGKTVITGAEVFAIQAVEQFVLYTGIRPSQALFEQAAAYARG 292
2 -102.000IDP90926 gene: aroE; shikimate 5-dehydrogenase [Salmonella typhimurium LT2] STM3859 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  73  1....................MTKRINKDTQVCMSLAARPSNFGTRFHNYLYEALDLNYLYKAFSPTDLTQAISGVRGLGIRGCAISMPFKEACIPLVDELDASAQAIHSVNTIVNTNGHLKAYNTDYIAIARLLANYKVSPDLVFALRGSGGMAKAVACALKDAGFTRGYIVAIDEASGKQLAELYGYEWRPDTDGIEADLLINATPIGMAGGNDADKLSYSEQEVDKASVIFDVVALPPVTPLIRYARERGKTVITGSEVFAIQAVEQFVLYTGIRPDDALFQKAAAWS.. 270
3 -90.900IDP90166 gene: aroE; shikimate dehydrogenase [Clostridium difficile 630] CD1837 [Peptoclostridium difficile 630]  ali follow..  22  2..............................NFFGLVGEKHSVSPQIHKRVFEILNIESAYKNFEIEDISKLDGAIKLLGIQGVNVTVPYKERIMKYLDFISPEAKRIGAVNTILLRENMLYGYNTDYFGLDSMFKMANDVQGKVAVILGTGGASKAALTYFIDSGIEKLYVSTRKKDDKKLLNSKAILIDYEELKHIKGDIILNATPVGMYPNVGI--SPVSKSIIQNFDILIDLIYNPGETEFLRIGNSMGKKTCDGLYMLVGQAIKSQEIWQDTKIDNSILDVIYNE... 263
4 -89.800IDP91166 gene: aroE; shikimate 5-dehydrogenase STM1359 [Salmonella enterica subsp. enterica serovar Typhimurium]  ali follow..  27  3.........................VTAKYELIGLMAYPHSLSPEMQNKALEKAGLPYTYMAFEVTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTEALASADILTNGTKVGMKPLENESLI-GDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVMGFT.. 287
5 -89.400IDP04232 gene: aroE; shikimate 5-dehydrogenase [Clostridium perfringens ATCC 13124] CPF_0693 [Clostridium perfringens ATCC 13124]  ali follow..  22  2..............................KLFGLIGEKHSLSPEIHNKVFKDNNIDGLYNLFSVDFENNIVESLKCLGVKGANVTIPYKEKVMDQLDIISHEAKAIGAVNTILIKDGKSYGYNTDYYGFGKMLERAKNIEGNSFFVLGAGGAARSILKYLEDSKAKKIVLVSRDREKAFKKFKDFNINFMELEEINEEFALINTTPCGMYPNINS--VAVSEKVIKKFKVAVDIVYNPLETKFLKMAKDNGLKTVDGLFMLVGQGVKAEEIWNGIKVDKSTEEDIYEELK. 268
6 -89.200IDP91169 similar to shikimate 5-dehydrogenase lmo0490 [Listeria monocytogenes]  ali follow..  26  9.........................ITGHTELIGLIATPHSLSPTMHNEAFAKLGLDYVYLAFEVKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKRKEIAESVIFTNATGVGMKPFEGETLL-PSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF.... 291
7 -88.700IDP91168 similar to shikimate 5-dehydrogenase (AroD) lmo1490 [Listeria monocytogenes]  ali follow..  21  2..............................EKYVVIGNPHSLSPAMQNRIFQELGMNAEYNSVLIDAFETEIKKLMDSGVRGFNITTPFKERILPFLDELDNLAAASGAVNTVLKKEDKWYGFNTDGKGYLEGLEEIRITEDDSILITGAGGASKAIYLALSTHTDAKITVANRTTEKAIEMTKDNNNHHAITLELADFTIIIQTTSIGLEASKNK--SPISLANVKQGTICSDIIYNPAETAFLKEAKKNGAITQNGLPMFVNQGALAFEIWTGIKPERSLMKEAVLEQLG 271
8 -87.800IDP02833 gene: aroE; shikimate 5-dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA4561 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  26  2.............................KQLYGVIGNPHSLSPVMHNDAFEHLKMDAHYHAFLVEVLGEAVRGLKALGISGFNVTTPHKVAIMDYLDEIDPLAKQIGAVNTVVHKDGKLIGYNTDGIGFVRALQSISPLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTALEKATKEQGNYDIIIQTTTIGMHPRVEH--TPLQISSLKKGTIVSDIIYNPFETKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVIRNLE 276
9 -86.800IDP91170 similar to oxidoreductase lmo2236 [Listeria monocytogenes]  ali follow..  24  1.....................MENRISGTTRLLGLIGTPHSKSPIMYNYSFQKAGLDYAYLAFDTQKVADTIKAIKTFNLRGANVTMPCKSEVLKHMDDLSPAARMIGAVNTIVNEDGKLTGHITDGLGFIANLRDASDVAGKKMTIIGAGGAATAIQVQCALDGAKEITIFNIKDDKAKQTVASIKQEVPNNAEITTSDILVNATLVGMHPNEHETPIS-DTSVFRKELIVADIIYNPKKTQLLLDAEAAGCKTVGGLGMLLWQGAEAYKLFTGKDMPVSEVKDLYFN... 289
10 -86.200IDP90864 gene: aroE; shikimate 5-dehydrogenase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0405 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  24  2..............................KFLAVIGDPHSKSPRMHNNAIKALGLDSIYTRYHLRNANCLREDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALGFLEAIKDF--DNIKKALILGAGGTALALAYVLKQKGV-EVYIANRSKERFKDFLAYPTY-LYKNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGR-ETPFYRLCKEYHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALI 260
11 -83.200IDP02433 gene: aroE; shikimate 5-dehydrogenase [Coxiella burnetii RSA 493] CBU_0010 [Coxiella burnetii RSA 493]  ali follow..  18  2..............................DKYAVIGNPHSLSPVIFQAFEKQTNHSFDYLKIKANGFAAAVKKFHDEGGKGANITLPFKEEAYQLADKRSQEANEAHVASALFREDGTIYAVNYDGLGLVQDLTRNHTLTQKSILIVGAGGATRGILGPLLNAAPEKIVIVNRTPSKAHALAKIFHGGGFDELEPMRYDVIIHATSLGHQGKF----PPLPDGLIGSQSCCYDLSYGKIASPFLQWAKDQGAKNFDGLGMLVEHNAAVFYLWFGIYPDTNPVIEMLQAHL. 272
12 -83.000IDP91167 gene: aroE; shikimate 5-dehydrogenase STM3401 [Salmonella enterica subsp. enterica serovar Typhimurium]  ali follow..  21  2..............................ETYAVFGNPHSKSPFIHQQFAQQLDIVHPYGRVLANNFINTLDAFFAAGGKGANITVPFKEEAFARSDELTERASLAGAVNTLKREDGRLLGDNTDGIGLLGDLERLNIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTASRAEALAKIFAATDMDKLDGCEFDLIINATSSGIRGEI----PAIPASLIHPSLCCYDMFYQKGNTPFLSWCVQQGAKRYDGLGMLVGQAAHAVLLWHGVLPQVEPVIEQLQQEL. 270
13 -82.800IDP90792 gene: aroE; shikimate 5-dehydrogenase [Vibrio cholerae O1 biovar eltor str. N16961] VC0056 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  1.........................MASQIDQYAVFGNPHSKSPFIHTLFARQTQQSMIYTAQCVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKDDGEILGDNTDGEGLVQDLLAQQLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQKQSYDVIINSTSASLDG----ELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLE 275
14 -81.400IDP91204 shikimate 5-dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] BT_4215 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  22  2..............................EKYGLIGYPHSFSIGYFNEKFRSEGINAEYVNFEIPNINDFMEVIEEPNLCGLNVTIPYKEQVIPFLNELDRDTAKIGAVNVIKKGKVKLVGYNSDIIGFTQSIQPLLQPQHKKALILGTGGASKAVYHGLKNLGI-ESVFVSRTHKTDDMLTYE----ELTPEIMEEYTVIVNCTPVGMYPKVDFCP-NIPYELLTPNHLLYDLLYNPNVTLFMKKGEAQGAVTKNGLEMLLLQAFAAWEIWH.................. 247
15 -80.400IDP04636 gene: aroE1; shikimate 5-dehydrogenase [Francisella tularensis subsp. tularensis SCHU S4] FTT0238 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  19  2.............................KDLYHVIGFPHSLSPAIQMRLAQQYNQDMLFTAIEVQDLEAKIQEFKTPQVKGLSVTVPHKERVYALADDADTTAKAVQAASNVITAERKMIALNYDGLGIVNDIKNNYDFAGKKVLVVGAGGAAKAVVAAVLKESPLSLSITNRTLAKAKAIEELFKVDTKIDNISDSFDIVINSTSSSIDG----KLLPLKDSNFNKNAFAYDLMYADGGTIFTKWCQAHNIAAADGKGMLKELSIAVFKYWRGL................ 257
16 -77.300IDP91203 gene: aroE; Shikimate 5-dehydrogenase [Bifidobacterium longum DJO10A] BLD_0429 [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]  ali follow..  22  2............................ANHRCAVLGKPHSLSPVLHNAAYRSLKLDWLYDKHEVDDLDAFLKGLDS-TWAGLSLTMPLKKTIQPYGVPENLWAKELKVANTAVNGKPGIKLYNTDVIGIQLAFDHANASRSGTALIIGNGNTATSALAACCMPEIGHIVVAARHPGKNTGLKPVAEKFVNVLEAARNATYVINTIPGHAADNVADA--LANAGTEPFSGLLLDVIYDPRPTKLMEAWRAHGGHAIGGEEMLLYQALVQVLLMTGIDPPSDADQRLQDTTTE 307
17 -73.400IDP91171 RecName: Full=Shikimate biosynthesis protein AroDE; Includes: RecName: Full=3-dehydroquinate dehydratase; Short=3-dehydroquinase; AltName: Full=Type I DHQase; Includes: RecName: Full=Shikimate dehydrogenase CT_370 [Chlamydia trachomatis]  ali follow..  22  189..SSPVAPGQFSLKHHYFYNFAS--LSAQSPICALIG-SRSIGHLTHNPFFSQLGVACPYIKLPLQELPKFFSTIRTQPFLGVSVTSPLKTAVLPFLDKQAPSVKASGSCNTLVIRQGEIEGHDTDGEGLFSVLMQHQPLNNQRVAIIGAGGAAQSIATRLSRANC-ELLIFNRTKAHAEDLASRCQAFSLEELPLHRVSLIINCLPPSCTIPKAVAP------------CVVDINTIPKHSTFTQYARSQGSSIIYGHEMFTQQALLQFRLWFPTLSFKHLEKTFIRRAAV 469
18 -42.200IDP92648 RecName: Full=Pentafunctional AROM polypeptide; Includes: RecName: Full=3-dehydroquinate synthase; Short=DHQS; Includes: RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Short=EPSPS; Includes: RecName: Full=Shikimate kinase; Short=SK; Includes: RecName: Full=3-dehydroquinate dehydratase; Short=3-dehydroquinase; Includes: RecName: Full=Shikimate dehydrogenase AFUB_013230 [Aspergillus fumigatus A1163]  ali follow..  23 1262ALPFRAAPGQLSATDIRKGLSLMGEIKKKR--FALFGSPESRSPALHNTLFAEMGLPHEYTRLETANVEDVKDFIRAPDFGGASVTIPLKLDIMPLLDEITAEAEIIGAVNTVVPVSDGLVGHNTDWQGMVQCLRNAGADGSASALVVGGGGTSRAAIYALHQMGFSPIYIVGRNPAKLESMVSTFPTSYNIQIVEGNEKVAIGTIPCHMFERAQEADADASRTIEGSPRVLLEMAYKPRVTALMQLAVDAGWTTIPGLEALIGQGVHQVGLWTGIRPLYERARVCCDIL.. 1595
19 -13.300IDP02777 gene: hemA; glutamyl-tRNA reductase [Bacillus anthracis str. `Ames Ancestor`] GBAA4698 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  51...........................NRTEIYAVVDQLHTGRYYIKKFLADWFQLEYLTIFEQDGAIDHLFRVT-----CGLDSMVVGETQILGQIKDSFLEAQQVKATGTIFNE-AKRAHSETTYAAVELGKKIFGELTDCHVLILGAGKMGELALQNLYGSGARKVTVMNRTLSKAEIMAEKYMGHAKPQCALLEADILISSTGASDYVITKEMMTKVEKMRSGRPLFMVDIAV-PRDIGVVEANRAERLKEAEKIQFMIEEEIVLFKTWLSTLGVVPLISALRDKA.. 352
20 -12.500IDP90936 gene: hemA; glutamyl-tRNA reductase [Yersinia pestis CO92] YPO2016 [Yersinia pestis CO92]  ali follow..  14  51...........................NRTELYLSVEQQENLHEQLTAWLCNYHKLSSLYWHHGNDAVRHLMRVA-----SGLDSQVLGEPQILGQVKKAFAESQRGQSLSSELER-AKRVRTETEFAACSLARQIFESLSELHVLLVGAGETIELVARHLREHQVKHMIIANRTRERAQSLASEVGAEVITDARLADADIIISSTASPLPIIGKGMVERALKTRRNQPMLFIDIAV-PRDIAIIQHNMAQRQAAAVQAESIVQQESMNFMTWLRAQGAVETIRDY...... 348
21 -11.800IDP04169 gene: hemA; glutamyl-tRNA reductase [Vibrio cholerae O1 biovar eltor str. N16961] VC2180 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  103................................................................................CGLDSLVLGEPQILGQVKQAYAEARENHAVNPATEK-AKRVRTETEYAACTLAKHIFESLADATVLLVGAGETIELVAKHLAGHHCKRMIVANRTRERALSLAQQFGADVIAPDYLAQADIVISSTASPLPIIGKGMVESALKARRHQPMLLVDIAV-PRDISIVDSNIEQRKVEAIQAEAIVSEESATFMSWMRSLQAVDSIRDYRKQA.. 350
22 -11.800IDP02522 gene: hemA; glutamyl-tRNA reductase [Coxiella burnetii RSA 493] CBU_1966 [Coxiella burnetii RSA 493]  ali follow..  13  51...........................NRTEIYTTVDEAATILRWLSK--QPQLSGIDLRSFCYARRDIEMVRHVMRVG-SGLDSMVLGEPQILGQMKQAYLLARRIGAVGSELGR-TKRIRSETAYAVVQLAKRIFSHLNQCQILLIGAGETIELVFSHLYNQGARHFFIANRTLTRAKQIAEPYHAQAIRPTYLPKVDIVISATMSQLPLVGKGAVESALRQRKRRPLFMADLAL-PRDQTLIAQNRQTREAAAKQAEAMVEMQAIHYMRQLQVHKAGDTIRRF...... 344
23 -11.800IDP91454 gene: hemA; glutamyl-tRNA reductase [Vibrio vulnificus CMCP6] VV1_0254 [Vibrio vulnificus CMCP6]  ali follow..  14  103................................................................................CGLDSLVLGEPQILGQVKQAYSDSREQQAVDASLEK-AKRVRTETDYAACTLAKHIFESLEKSTVLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVISPNHLAKADIVISSTASPLPIIGKGMVETALKQRRHQPMLLVDIAV-PRDVSIIDSNIEQRKVEAIQAEAIVAEESAAFMSWLRSLQAVDSIREY...... 346
24 -11.300IDP02291 gene: hemA; glutamyl-tRNA reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT0167 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  49..........LSTCNRTEVYLEISDLRVVDDILVWWQGYVRNPYKIKDYFKLRQGTEVIMHLMKLA--------------CGLESMVLGEPQILGQVKDSYTLSKKNHAIGKELDR-AKRVRSETRFSAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSIKKADIIIAAVN-------VLEYIVTCKYVGDKPRVFIDISI-PQALAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKEKAIISNSAIKELFQKA.. 347
25 -10.700IDP90674 gene: hemA; glutamyl-tRNA reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0542 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  103................................................................................SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSR-AAKVRNETQASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGA-KVIILNRDLQKAKDLCERLGVLSEYKKYLNQYEFFFSATN--------APNAIITNSLIEELRYFFDIAV-PRDEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMPIIKAIRLQA.. 343

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.