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Query: IDP90779 gene: nusA; transcription elongation factor NusA [Yersinia pestis CO92] YPO3497 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRGVLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGELIMAARNICWFGDNALast
1 -134.000IDP90779 gene: nusA; transcription elongation factor NusA [Yersinia pestis CO92] YPO3497 [Yersinia pestis CO92]  ali  100  1MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRGVLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGELIMAARNICWFGDNA 495
2 -110.000IDP04602 transcription elongation factor NusA [Bacillus anthracis str. Sterne] BAS3667 [Bacillus anthracis str. Sterne]  ali follow..  37  1MSTELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKDVVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAERGVIYSEFSDREEDIMVGIVQRQDARFIYVSLG-KVEALLPVSEQMPNEQYKPHDRIRVFITKVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENIDVDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKATTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSVEDE................................................................................................................................ 366
3 -107.000IDP06274 gene: nusA; transcription elongation factor NusA [Streptococcus pneumoniae TIGR4] NP_345069 [Streptococcus pneumoniae TIGR4]  ali follow..  34  1MSKEMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREVVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHEQEIMSGTVERFDNRFIYVNLG-SIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGANIKKITSKFHPENIDVIEWVADPAEFIYNAIAPAEVDQVIFDEDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEDAA................................................................................................................................................ 365
4 -104.000IDP90599 gene: nusA; transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0460 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  28  2..EKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFVDPKNLNLYQKTIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAVIRRVYTD-KGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKIEDKK--AIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNLQDLFKI.................................................................................................................................. 362
5 -9.790IDP01255 gene: yugI; general stress protein 13 BA_5132 [Bacillus anthracis str. Ames]  ali follow..  16  6....................................................................................................................................TTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEKDIHDFLKVGDTVEVKVLSIDEEHRKMSLSLKAAKRKQGRILIPNTLREKLTEWIEESELTK........................................................................................................................................................................................................................................................................... 114
6 -9.410IDP01668 hypothetical protein GBAA0060 [Bacillus anthracis str. `Ames Ancestor`] GBAA0060 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  4....................................................................................................................................EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEKDINDHLKVGDQVEVKVINVEKDGK---IGLSIKK...................................................................................................................................................................................................................................................................................................... 75
7 -9.160IDP00627 hypothetical protein SACOL0552 SACOL0552 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  4....................................................................................................................................EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEENVEEHLSVGDEVDVKVLSIADDGK---ISLSIKK...................................................................................................................................................................................................................................................................................................... 75
8 -9.160IDP91723 gene: HNRNPK; heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens] NP_112552 [Homo sapiens]  ali follow..  9  46..........................................................................................................................................................................................................................................RILLQS-----KNAGAVIGKGGKNIKAL-RTDYNASVSVPD-GPERILSISADIETIGEILKKISDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC......................................................................................................................................................... 184
9 -6.190IDP90614 DNA polymerase III subunit beta [Vibrio cholerae O1 biovar eltor str. N16961] VC0013 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  10LIKPLQQVSGTLGGRASLPGNLLLKVEENQLMTATDLEVELISRVTLEGEFEAGSITVPARKDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIEDWQSEVQVSAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDQKQIIVPRKGVLELVKLLDAPE-----QPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPDLRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEAEELLDV---SFEGEPIEI-------VSYILDVLNTLRCDNVRVSMSDANASALVENVD...................................................................................................................................................................................... 353
10 -5.760IDP00441 gene: trpG; anthranilate synthase component II YPO2207 [Yersinia pestis CO92]  ali follow..  14  2................................................................................................................................................................................................ADILLLDNIDSFTYNLVDQIIERLQQLEQPVLMLSPGPGTPAQALLQRLQGQLPMIGICLGHQGGHVGQAGEILHGKASAIEHDGQGMFAGMPNPLPVARYHSLVGSNLPAELTVNARFGEMVMAVRHDGYQFHPESILTTHGARLLE........................................................................................................................................................... 184
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.