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Query: IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQKLast
1 -141.000IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali  100  1MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQK 330
2 -113.000IDP90793 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0704 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  63  1...............................MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDLKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYGLERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFENSYKECKNIL--EQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAEIYKKNLNEAE.......... 287
3 -112.000IDP06256 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Streptococcus pneumoniae TIGR4] NP_345929 [Streptococcus pneumoniae TIGR4]  ali follow..  60  1...........................MSKKLTFQEIILTLQQFWNDQDCMLMQAYDNEKGAGTMSPYTFLRAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLEKLGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAEVTYGLERLASYIQEVDSVYDIEWADGV----KYGEIFIQPEYEHSKYSFEISDQEMLLENFDKFEKEAGRAL--EEGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVAKTFVAERKRLGYPLLDEETRA 297
4 -98.900IDP05557 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1459 [Listeria monocytogenes EGD-e]  ali follow..  63  1................................................................MSPYTFLKAIGPEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGINPLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYGVERLASYIQDKENVFDLEWTEGI----SYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYEREATRQ--MQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFYESREKLGFPLLKEEGGK 260
5 -51.000IDP92131 alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49] TGME49_019540 [Toxoplasma gondii ME49]  ali follow..  15  1........MAMTEEERRAKIEEISAKGKAKGWSGEAVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFIFLGQIDRSSRRVADTQKCIRANDLEDVGKDVYMLGNWSFGDYFK----REAIAWAWQLLTEVYKIPKDRLYAKENFWEMADTGPCGPCSEIHYD-LEIWNLVFMQYNRETPLPAPCVDTGMGLERVASVLQDKQSNYDTDFTALFDKILELSPGLRPYGGKVGEEDKDMVDM---------------------------AYRVLADHARCLTAAIADGAEPSNEGRGYVLRLRRAVRYARQT-VVSLLGETFPEMKKNEEK 390
6 -49.400IDP05327 gene: alaS; alanyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1504 [Listeria monocytogenes EGD-e]  ali follow..  13  1............................MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWIFDGSVIPDNPRMANAQKSIRTNDIENVGKTARMLGNFSIGDYFKEGA-DPDKLYVTTLWREKIGLSDDHIVEIEDNFWDIGIGPSGPDSEIFYD-LEIWNLVFSQFNHNTPLPKQNIDTGMGLERMVSIIQDAPTNFETDFMPIIREVEQIAGVKYGHSQENDV-----------------------------------AFKVIADHIRTVAFAIGDGALPSNEGRGYILRLRRAVRYAKVLTINE............... 322
7 -49.100IDP05710 gene: alaS; alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1673 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  1............................MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWIFDGRETPKKPRIVNSQKAIRTNDIENVGFTARMLGNFSIGDYFKQEAIEFAWEFLTNIWHKDIGLEESRIRIEGNFWDIGE-GPSGPNTEIFYD-LEVWNLVFSEFNHNTPLPNKNIDTGMGLERMASVSQNVRTNYETDFMPIMNEIEKVSGKQYLVNNEQDV-----------------------------------AFKVIADHIRTIAFAISDGALPANEGRGYVLRLRRAVRFSQTLGINE............... 322
8 -48.100IDP04730 alanyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4284 [Bacillus anthracis str. Sterne]  ali follow..  13  1............................MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWIFDGRVIPQNPRITNAQKSIRTNDIENVGKTARMLGNFSIGDYFKEEAITWAWEFLTSIWNEKMGVPKERIRLEENFWDIGE-GPSGPNTEIFYD-LEVWNLVFSQFNHNTPLPKKNIDTGMGLERMTSIVQDVPTNFDT---------------------------------DLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPSNEGRGYVLRLRRAVRYSKKLNINR............... 323
9 -47.500IDP90826 gene: alaS; alanyl-tRNA synthetase [Yersinia pestis CO92] YPO3305 [Yersinia pestis CO92]  ali follow..  14  2..............................SKSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTFLGLDKRAYSRATTSQRCVRANDLENVGYTARMLGNFSFGDYFKHDAINFAWELLTNIWANEVGVPHERII-SDNFWQMGDTGPCGPCSEIFFD-IEIWNIVFMQFNRQLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDFRDLIAAVADVTGATDLSSK---------------------------------------SLRVIADHIRSCAFLISDGVIPSNENRGYVLRIRRAIRHGNMLGAKE............... 328
10 -46.500IDP90679 gene: alaS; alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0506 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  2...................................DIRKAYLDFFASKGHEITPSSPLVPGMVPFKSIFTGEIPRPNPPRKTSCQTCIRANDLDNVGYTARMLGNFSFGDYFK----EQAIAYAWEFVTEVLKLPKDRLYVKDNFWQMGDTGPCGPCSEIFYD-LEIWNLVFMQYERSSPLPKPSIDTGMGLERVTAIKEGKFSNFDSSFMPIINEISKLCNKTYVYESGAS-------------------------------------FRVIADHIRSSVFLLAQGVSFDKEGRGYVLRLRRALRHGYLLGFKQ............... 314
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.