current user: public

If you have questions about the server, please let us know.

Query: IDP90989 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] y1222 [Yersinia pestis KIM10+], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320
# Score Template Links and tools%idFirst MNVVKPITRISAINWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWATLTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKKADIISQHYHNDDPLKKKIASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYDNEVRYTEDLYDHVGWTEDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWDFLast
1 -112.000IDP90989 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] y1222 [Yersinia pestis KIM10+]  ali  100  1MNVVKPITRISAINWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWATLTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKKADIISQHYHNDDPLKKKIASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYDNEVRYTEDLYDHVGWTEDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWDF 323
2 -104.000IDP06237 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] NP_345649 [Streptococcus pneumoniae TIGR4]  ali follow..  51  2......ETYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSNKEKDLVGKVFGGLTLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVNEIYLNGSPLEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDGVGWTEEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPI-VMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDDYNY 317
3 -98.800IDP02619 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. `Ames Ancestor`] GBAA1372 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  39  1.........MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEINP---IVLNGLRTDTKNHDFFSVKGNGYVKATNVEKSDDDFVF 320
4 -85.800IDP95259 ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] YP_001083788 [Acinetobacter baumannii ATCC 17978]  ali follow..  16  36......NCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSETEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYCIESLGMDEG--EVFNMYREIPSVARKAAWGLKYTQSRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGMNASMMEEYLKFICNRRLSQLGLPEQFAGVTN---PFAWMSEMMDLRKEKNFFETRVTDYQTGGALS........ 360
5 -11.300IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124]  ali follow..  10  13..................................................NLKCNDLRMAKFLISQYGGPDELSAALRYLNQRYTMPTNKAKGLLTDIGTEEMAHVEMIATMIYQLMENASLEDLKKAGLAERYTDHGKALFTYIQAKGDVVADLHEDMAAEARATYQWLINLT--------QDIKEILRFLREREIVHFQRFGEALMDVQDKMKC........................................................................................................... 186
6 -6.000IDP01174 hypothetical protein BA_2823 BA_2823 [Bacillus anthracis str. Ames]  ali follow..  12  1..............MNNILNQIKKEVNMDLLNGLWKRAAFALYDDEHVYPLFLKDNDEYRVLKWEEQFKGDTCILFKDYPTAIVNMNRYKDYASLLAIVVHELFHGFQYPIIEENIQLRNKERICLYDAVHCKSQAEKNNYIKQFIELREQRASVMMVESIEGPAWYVEMNAYNTVCKSDESDTLRKYSGLILDVYDANCNMRKSCYSSLLDEILPEWKISFFNSLYAFLKQNINVDLSLNNEITISKETKQILHF-VQNERDKEIKQF...................................................... 295
7 -4.810IDP06019 phospholipase A2 activating protein, putative [Toxoplasma gondii ME49] EEB01121 [Toxoplasma gondii ME49]  ali follow..  14  639.....................................MEFDAQFPEDSPAHLTALEKQYLLDALEKIQSPSFMKKE---------FRACELDVIFEKLAVWPSSKAVPVMDVWRALALHPQYHAVHRKSGDHGWMTVVVALRH-ASQADETPLILCCLRFLANLMDLTTNRTVMLRHANVVLESLASDRVLTNPNKNVRLTAASLLANAFATKEETEGRIKVLKLLRGLMEREGDADVFY-----------------------RCLLAVL..................................................... 846
8 -4.700IDP02347 gene: ftnA; ferritin [Yersinia pestis CO92] YPO1783 [Yersinia pestis CO92]  ali follow..  13  3...................................................................................................................................................KKEMAQKLNEQLNLEFYSANLYLQMSAWCSDKG-FEGAAAFLKKHSQEEMQHME---RLFEYLSGTGSMPVLGTITASLADVFKLTYEHEQLITTQINEMTTHDYSTFNFLQWYVAEQHEEE...................................................... 131
9 -4.660IDP01358 ferritin VC0078 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  9...................................................................................................................................................SQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKG-FDGAAEFLRAHAVEEMQHMQ---RLFTYVSETGALPILGAIAASLGEVFRETYQHEQKITQQINKFTSQDYSTFNFLQWYVAEQHEEE...................................................... 137
10 -4.640IDP02083 gene: ispB; octaprenyl-diphosphate synthase [Francisella tularensis subsp. tularensis SCHU S4] FTT1044c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  14........................................DIQNNNQFIVDSLCSDVVLINQISHYIINSGGKRLRPLLVMLFARALNYNGDKHLACAAIIEFIHTATL---------------LHDDVVDDSQLRRGKQTANNVFGNA-------ASVLTGDFLYSRAFQMMVSLDNMQIMQILADATNKISEGEVLQLLNARNSIKVIYCKTAKLFEAELAGVISLDKQDYTKYQGRIKNYGVYLGNAFQIADDVLDYVSDA--ESLG..................................................... 228

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.