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Query: IDP91204 shikimate 5-dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] BT_4215 [Bacteroides thetaiotaomicron VPI-5482], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEKYGLIGYPLRHSFSIGYFNEKFRSEGINAEYVNFEIPNINDFMEVIEENPNLCGLNVTIPYKEQVIPFLNELDRDTAKIGAVNVIKIIRQPKGKVKLVGYNSDIIGFTQSIQPLLQPQHKKALILGTGGASKAVYHGLKNLGIESVFVSRTHKTDDMLTYEELTPEIMEEYTVIVNCTPVGMYPKVDFCPNIPYELLTPNHLLYDLLYNPNVTLFMKKGEAQGAVTKNGLEMLLLQAFAAWEIWHRLast
1 -104.000IDP91204 shikimate 5-dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] BT_4215 [Bacteroides thetaiotaomicron VPI-5482]  ali  100  1MEKYGLIGYPLRHSFSIGYFNEKFRSEGINAEYVNFEIPNINDFMEVIEENPNLCGLNVTIPYKEQVIPFLNELDRDTAKIGAVNVIKIIRQPKGKVKLVGYNSDIIGFTQSIQPLLQPQHKKALILGTGGASKAVYHGLKNLGIESVFVSRTHKTDDMLTYEELTPEIMEEYTVIVNCTPVGMYPKVDFCPNIPYELLTPNHLLYDLLYNPNVTLFMKKGEAQGAVTKNGLEMLLLQAFAAWEIWHR 248
2 -85.500IDP90166 gene: aroE; shikimate dehydrogenase [Clostridium difficile 630] CD1837 [Peptoclostridium difficile 630]  ali follow..  34  1MNFFGLVGEKLSHSVSPQIHKRVFEILNIESAYKNFEIEDISKLDGAIKL-LGIQGVNVTVPYKERIMKYLDFISPEAKRIGAVNTIL-----LRENMLYGYNTDYFGLDSMFKMNIDVQGKVAVILGTGGASKAALTYFIDSGIKLYVSTRKKDDKKLLNSKDYEELKHIKGDIILNATPVGMYPNVGISP-VSKSIIQNFDILIDLIYNPGETEFLRIGNSMGKKTCDGLYMLVGQAIKSQEIWQ. 248
3 -85.300IDP04232 gene: aroE; shikimate 5-dehydrogenase [Clostridium perfringens ATCC 13124] CPF_0693 [Clostridium perfringens ATCC 13124]  ali follow..  31  1MKLFGLIGEKLGHSLSPEIHNKVFKDNNIDGLYNLFSVDFENNIVESLKC-LGVKGANVTIPYKEKVMDQLDIISHEAKAIGAVNTIL-----IKDGKSYGYNTDYYGFGKMLERKVNIEGNSFFVLGAGGAARSILKYLEDSKAKIVLVSRDREKAFKKFKDFNINEEINEEFALINTTPCGMYPNINSVA-VSEKVIKKFKVAVDIVYNPLETKFLKMAKDNGLKTVDGLFMLVGQGVKAEEIWN. 251
4 -85.200IDP90864 gene: aroE; shikimate 5-dehydrogenase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0405 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  26  1MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCLREDFFK-LGLSGANITLPFKEKALDIADVKDDFARNIGSANTLC-----LKEDKIYAYNTDALGFLEAIKD--FDNIKKALILGAGGTALALAYVLKQKGVEVYIANRSKERFKDFLAYLYKNLQDFDFDLVINSTSAGLKDENLPCDELLDRILPKAKFAFEVIYGR-ETPFYRLCKEYHLKIKDGLDMLLWQGVFAFELFF. 242
5 -84.300IDP91168 similar to shikimate 5-dehydrogenase (AroD) lmo1490 [Listeria monocytogenes]  ali follow..  33  1MEKYVVIGNPIRHSLSPAMQNRIFQELGMNAEYNSVLIDAFETEIKKLMD-SGVRGFNITTPFKERILPFLDELDNLAAASGAVNTVL-----KKEDKWYGFNTDGKGYLEGLEERSITEDDSILITGAGGASKAIYLALSTHTDKITVANRTTEKAIEMTKDEEAEKQLADFTIIIQTTSIGLEASKNKSP-ISLANVKQGTICSDIIYNPAETAFLKEAKKNGAITQNGLPMFVNQGALAFEIWT. 253
6 -83.000IDP90926 gene: aroE; shikimate 5-dehydrogenase [Salmonella typhimurium LT2] STM3859 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  21  12..CMSLAARP--SNFGTRFHNYLYEALDLNYLYKAFSPTDLTQAISGVRG-LGIRGCAISMPFKEACIPLVDELDASAQAIHSVNTIV-----NTNGHLKAYNTDYIAIARLLANYKVSPDLVFALRGSGGMAKAVACALKDAGFRGYIVAIDEASGKQLAEEWRPDTDGIEADLLINATPIGMAGGNDADKSYSEQEVDKASVIFDVVALPPVTPLIRYARERGKTVITGSEVFAIQAVEQFVLYT. 254
7 -82.800IDP91169 similar to shikimate 5-dehydrogenase lmo0490 [Listeria monocytogenes]  ali follow..  29  14.ELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVKELKDVVQGFRA-MNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVV-----NDDGVLTGHITDGTGYMRALKEGHDIIGKKMTICGAGGAATAICIQAALDGVEISIFNRKDDFYANAEKTEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWT. 277
8 -82.400IDP91166 gene: aroE; shikimate 5-dehydrogenase STM1359 [Salmonella enterica subsp. enterica serovar Typhimurium]  ali follow..  27  8.ELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVTTFASAIEGLKA-LKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIV-----NDDGYLRGYNTDGTGHIRAIKEGFDMRGKTMVLLGAGGAATAIGAQAAIEGIEIKLFNRKDDFFEKAVAQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWT. 271
9 -81.900IDP04636 gene: aroE1; shikimate 5-dehydrogenase [Francisella tularensis subsp. tularensis SCHU S4] FTT0238 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  22  3.DLYHVIGFPVKHSLSPAIQMRLAQQYNQDMLFTAIEVQDLEAKIQEFKTNPQVKGLSVTVPHKERVYALADDADTTAKAVQAASNVIF----TAERKMIALNYDGLGIVNDIKNKIDFAGKKVLVVGAGGAAKAVVAAVLKESPSLSITNRTLAKAKAIEELFKVDNISDSFDIVINSTSSSIDGKL---LPLKDSNFNKNAFAYDLMYADGGTIFTKWCQAHNIAAADGKGMLKELSIAVFKYWR. 255
10 -81.500IDP91170 similar to oxidoreductase lmo2236 [Listeria monocytogenes]  ali follow..  30  10.RLLGLIGTPIDHSKSPIMYNYSFQKAGLDYAYLAFDTQKVADTIKAIKT-FNLRGANVTMPCKSEVLKHMDDLSPAARMIGAVNTIV-----NEDGKLTGHITDGLGFIANLRDSVDVAGKKMTIIGAGGAATAIQVQCALDGAEITIFNIKDAFYDKLNDTEKLNAEITTSDILVNATLVGMHPNEHETPISDTSVFRKELIVADIIYNPKKTQLLLDAEAAGCKTVGGLGMLLWQGAEAYKLFT. 274
11 -81.400IDP90721 gene: aroE; shikimate 5-dehydrogenase [Yersinia pestis CO92] YPO1610 [Yersinia pestis CO92]  ali follow..  22  31.VCISLAARP--SNFGTRFHNFLYDALDLDYLYKAFTTNDLAAAIGGVRA-LGFRGCAISMPFKEAVIPMVDEMDPSAKAINSVNTLV-----NTGGYLKAYNTDYIAIAKLLQEYQVPVDNVFALRGSGGMAKAVAFALKNAGFQGYIIATNEKTGKQLAEQYRPDMQNIQADMLINATPVGMAGGADADKAFTETEVDRAKIVFDVVALPAVTPLIRYAQTQGKTVITGAEVFAIQAVEQFVLYT. 274
12 -81.000IDP91167 gene: aroE; shikimate 5-dehydrogenase STM3401 [Salmonella enterica subsp. enterica serovar Typhimurium]  ali follow..  27  1METYAVFGNPIAHSKSPFIHQQFAQQLDIVHPYGRVLANNFINTLDAFFA-AGGKGANITVPFKEEAFARSDELTERASLAGAVNTLKR----LEDGRLLGDNTDGIGLLGDLERNFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTASRAEALAKIDMDKLDGCEFDLIINATSSGIRGEI---PAIPASLIHPSLCCYDMFYQKGNTPFLSWCVQQGAKRYDGLGMLVGQAAHAVLLWH. 253
13 -79.200IDP02433 gene: aroE; shikimate 5-dehydrogenase [Coxiella burnetii RSA 493] CBU_0010 [Coxiella burnetii RSA 493]  ali follow..  23  1MDKYAVIGNPVEHSLSPVIFQAFEKQTNHSFDYLKIKANGFAAAVKKFHD-EGGKGANITLPFKEEAYQLADKRSQEANEAHVASALQF----REDGTIYAVNYDGLGLVQDLTRNITLTQKSILIVGAGGATRGILGPLLNAAPKIVIVNRTPSKAHALAKIGFDELEPMRYDVIIHATSLGHQGKF---PPLPDGLIGSQSCCYDLSYGKIASPFLQWAKDQGAKNFDGLGMLVEHNAAVFYLWF. 255
14 -79.000IDP02833 gene: aroE; shikimate 5-dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA4561 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  32  3.QLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVEVLGEAVRGLKA-LGISGFNVTTPHKVAIMDYLDEIDPLAKQIGAVNTVV-----HKDGKLIGYNTDGIGFVRALQSSEPLQEKRILLLGAGGASRAIYFSLADAGVEIDVANRTVDKAKELIAAEKATKEQGNYDIIIQTTTIGMHPRVEHTP-LQISSLKKGTIVSDIIYNPFETKILCEAKEQGAIIQNGIDMFVYQGALAFEMWT. 258
15 -77.300IDP90792 gene: aroE; shikimate 5-dehydrogenase [Vibrio cholerae O1 biovar eltor str. N16961] VC0056 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  23  5IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVDGFTEAAKHFFA-QGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKK----LDDGEILGDNTDGEGLVQDLLAQVLLKGATILLIGAGGAARGVLKPLLDQQPSITVTNRTFAKAEQLAELVAAEQLKQSYDVIINSTSASLDGEL---PAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCQAIDGLGMLVGQAAESFMLWR. 257
16 -73.200IDP91203 gene: aroE; Shikimate 5-dehydrogenase [Bifidobacterium longum DJO10A] BLD_0429 [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]  ali follow..  22  4.HRCAVLGKPVAHSLSPVLHNAAYRSLKLDDLYDKHEVDDLDAFLKGLDS--TWAGLSLTMPLKKTIQPYGVPENLWAKELKVANTAVFDWSPNGKPGIKLYNTDVIGIQLAFDHHTASRSGTALIIGNGNTATSALAACCMMPGHIVVAARHPGKNTGLKPDQALLEAARNATYVINTIPGHAADNVADAL-ANAGTEPFSGLLLDVIYDPRPTKLMEAWRAHGGHAIGGEEMLLYQALVQVLLMT. 286
17 -67.300IDP91171 RecName: Full=Shikimate biosynthesis protein AroDE; Includes: RecName: Full=3-dehydroquinate dehydratase; Short=3-dehydroquinase; AltName: Full=Type I DHQase; Includes: RecName: Full=Shikimate dehydrogenase CT_370 [Chlamydia trachomatis]  ali follow..  21  215.PICALIG-DTSRSIGHLTHNPFFSQLGVACPYIKLPLQELPKFFSTIRT-QPFLGVSVTSPLKTAVLPFLDKQAPSVKASGSCNTLV-----IRQGEIEGHDTDGEGLFSVLMQQIPLNNQRVAIIGAGGAAQSIATRLSRANCELLIFNRTKAHAEDLASRSLEELPLHRVSLIINCLPPSCTIPKAVAP-----------CVVDINTIPKHSTFTQYARSQGSSIIYGHEMFTQQALLQFRLWF. 451
18 -39.900IDP92648 RecName: Full=Pentafunctional AROM polypeptide; Includes: RecName: Full=3-dehydroquinate synthase; Short=DHQS; Includes: RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Short=EPSPS; Includes: RecName: Full=Shikimate kinase; Short=SK; Includes: RecName: Full=3-dehydroquinate dehydratase; Short=3-dehydroquinase; Includes: RecName: Full=Shikimate dehydrogenase AFUB_013230 [Aspergillus fumigatus A1163]  ali follow..  26 1290.KRFALFGSPISESRSPALHNTLFAEMGLPHEYTRLETANVED-VKDFIRAPDFGGASVTIPLKLDIMPLLDEITAEAEIIGAVNTVVVSDGEGKPQRLVGHNTDWQGMVQCLRNAGADGSASALVVGGGGTSRAAIYALHQMGFSIYIVGRNPAKLESMVSTFPTSYNIQIVEVAIGTIP-ADRPIDPGMREILCHMFERAQVLLEMAYKPRVTALMQLAVDAGWTTIPGLEALIGQGVHQVGLID. 1563
19 -10.900IDP90674 gene: hemA; glutamyl-tRNA reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0542 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  103......................................................SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLAVHSAFKCAAKVRNETQASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDLCERENLKKYLNQYEFFFSATN-------APNAIITNSLIEELSYFFDIVFA---EIVVQKNLALREQEARMAYGIIGRETSEFFRYLN 328
20 -9.340IDP02777 gene: hemA; glutamyl-tRNA reductase [Bacillus anthracis str. `Ames Ancestor`] GBAA4698 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  105......................................................CGLDSMVVGETQILGQIKDSFLEAQQVKATGTIFLFKQVITLAKRAHSETTIGESAMSVSYAAELTDCHVLILGAGKMGELALQNLYGSGAKVTVMNRTLSKAEIMAEKSELQCALLEADILISSTGASDY-TKEMMTKVEKMRSGRPLFMVDILYD---QGVVEANRAERLKEAEKIQFMIEEEIVLFKTWLS 337

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.