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Query: IDP91227 gene: tyrA; T-protein [Escherichia coli CFT073] NT04EC3201 [Escherichia coli CFT073], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPIYVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVVIVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVSDAGMVIVSVPIHVTEQVIGKLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQLast
1 -95.000IDP91227 gene: tyrA; T-protein [Escherichia coli CFT073] NT04EC3201 [Escherichia coli CFT073]  ali  100  1MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPIYVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVVIVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVSDAGMVIVSVPIHVTEQVIGKLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ 373
2 -94.100IDP00461 gene: tyrA; bifunctional chorismate mutase/prephenate dehydrogenase YPO3285 [Yersinia pestis CO92]  ali follow..  86  1MVAELTALRDQIDEVDKALLDLLAKRLHLVAEVGEVKSRYGLPIYVPDREAAMLASRRQEAGALGVPPDLIEDVLRRVMRESYTSENDKGFKTLCPELRPVVIIGGQGQMGRLFSRMLNLSGYQVRTLEQEDWSQAESILADAGMVIVSVPIHITEEVINRLPKLPADCILLDLASVKNKPLQAMLAAHEGPVLGLHPMFGPDVGSLAKQVVVYCDGRDPQAYQWLLEQLQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSEDNLALIKRYYKRFGEALTLLEHHDKQAFVQSFEKVEHWFGDYAERFLVESRSLLRQANDNRQ 373
3 -43.800IDP05722 gene: tyrA; prephenate dehydrogenase [Bacillus anthracis str. Ames] BA_2954 [Bacillus anthracis str. Ames]  ali follow..  14  7...........................................................................................SLEMRQMRKKVVLIGTGLIGGSLALAIKKDHVTITGYDIFQEQDLQHACEEAHLIVFASPVEETKKLLHKLASLREDVIVTDVGSTKGSIMNEAEASKEISFIGGHPMAGSHKTGFENAFYILTPMVPNEHVEELKDWLKGTGSHFLVLNTEEHDYVTGIVSHFPHLIAAGLVKQVEKHAGDNPLIHQLAAGGFK----DITRIASSSPKMWSDIVKQNREHMVLLKEWISEMEDLYDTVSSGDAGEIQNYFADAKEYRDSLPVRKRGAIPAYHDLYVDVLD 315
4 -31.700IDP00319 chorismate mutase, putative CBU_2070 [Coxiella burnetii RSA 493]  ali follow..  24  39..DTLDCVRDRIDLIDQKIVLLIKDRLMYVQRAAELKKG-KKSIHDQVREDKILASVSQQAEKAGYSGEIVKAVFKTILHQSNNYEKRFHHYQSQKLNTRK................................................................................................................................................................................................................................................................................ 136
5 -26.000IDP02059 chorismate mutase [Yersinia pestis CO92] YPO1353 [Yersinia pestis CO92]  ali follow..  18  18IASSFFLSLAVQAQQCGQTAPLINERLSYMKDVAGYKAENHLPIEDRIQEEKVINSAMAQAESLGLNGESIKPLMVAQINAAKAIQYR............................................................................................................................................................................................................................................................................................. 105
6 -25.900IDP91298 chorismate mutase STM1269 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  26  13LMCSTTFADSVTSVSLGALLTALNERMLLMKDVAAYKMKHHLPIEDFTREQNVFAEAEEEAKNNGLDPHSITPFIRSLMDASKAIQYR............................................................................................................................................................................................................................................................................................. 100
7 -22.200IDP91304 gene: pheA; chorismate mutase P/prephenate dehydratase STM2667 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  5..NPLLALRDKISALDEELLALLAKRRALAIEVGQAKLLSHRPVRDIDRERALLDRLIHLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNNTHPHSARIAFLGPKGSYARQYAARHFEQFIESGCAKFTDIFHQVETGQADYAVVPIETSSGAINDVYDLLQHTSLSIVGEMTVTIDHCVLVSGATDLVYSHPQPFQQCSKF-------------SRYPHWKIDYTESTSAAMEKVAQANSPRVAALGSEAGGMLHGLQVLERIAANQTQNITRFVSDQVPAKTTLLIATGQQAGALVEALLVLRNHNLIMTK....................................................... 327
8 -22.100IDP91292 gene: pheA; bifunctional chorismate mutase/prephenate dehydratase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] SPA2526 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150]  ali follow..  15  5..NPLLALRDKISALDEELLALMAKRRALAIEVGQAKLLSHRPVRDIDRERALLDRLIHLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNNTHPHSARIAFLGPKGSYARQYAARHFEQFIESGCAKFTDIFHQVETGQADYAVVPIETSSGAINDVYDLLQHTSLSIVGEMTVTIDHCVLVSGATDLVYSHPQPFQQCSKF-------------SRYPHWKIDYTESTSAAMEKVAQANSPRVAALGSEAGGMLHGLQVLERIAANQTQNITRFVSDQVPAKTTLLIATGQQAGALVEALLVLRNHNLIMTK....................................................... 327
9 -22.100IDP91228 gene: pheA; P-protein [Escherichia coli CFT073] NT04EC3200 [Escherichia coli CFT073]  ali follow..  14  5..NPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPHSARIAFLGPKGSYARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIETSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLVYSHPQPFQQCSKF----------NRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQRQNFTRFVVLASDQVPAKTTLLMATGQQAGALVEALLVLRNHSLIMTR....................................................... 327
10 -21.300IDP00301 CBU_0983 [Coxiella burnetii RSA 493]  ali follow..  11  6..KALLELRKKIDEIDYQIHDLLNLRASYALKIAKVKVAEETKFYRPEREAEILERITAHNKG-PLSAKAIAIIFKTIMKKCRDLQIDSYPELKKMK--SIGIQGTKGSFSEIAAQEFTQHIDDFAVKYLISSENVLRAIENKEIDFGILRWKMRKASLRALKRXRNTAARLSICFISLSVKTXLPPLGKLLKFIHTVKPYANAVNFXQPTFGAAPLLKRTTQPSPRVVSKPESYQKQRLLLLIKP-----VQKYTTSNFXKKIFTISKTTXPSSXALKFMNP.......................................................................................... 289
11 -20.100IDP91432 prephenate dehydratase [Vibrio vulnificus CMCP6] VV1_0487 [Vibrio vulnificus CMCP6]  ali follow..  13  6..LSLDEIRLRLNDLDDQLLSLLSERRKLSIEVAKSKVETSKPVRDASREQQLLVKLITNGREKYLDAQYITKLFHTIIEDSVLLQQSYLQNLLNPERKPLARVAFLGSKGSYSREYFSRKNTELIELNCDHFKEVTQTVESGHADFGVLPIETSSGSINEVYDLLQHTTLYIVGELTQPIEHCLVATKDVRLLYSHPQPHQQCSEF-------------GRLKGVTLKSCASTADAMKKVQELNRDDVAAIGNASSGKLYGLQPIQGNIANQTENHTRFVSAQIPAKTTLIMSTSQKAGSLVETLLVLQRYGINMTK....................................................... 331
12 -19.600IDP90772 gene: pheA; chorismate mutase/prephenate dehydratase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0316 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  1.MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIYRPERERAIINRLKNANLG-LLDQNAIEAIYQEIFAVSRNLEMP-------------QTIAYLGPEGTYTHQAARSRGAMSRYIALANIEDVFKELSNKEAKYGVVPIEAVGITLDCLGKYNELKIFGEIMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKF----------ESHELSAIEFVPSKSTANAAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKTSILAHTAHKPGGLS----FLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVKKALKDIQEI......... 343
13 -18.800IDP00804 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase SACOL1787 [Staphylococcus aureus subsp. aureus COL]  ali follow..  27  1MSNKLESYRSEIVSLNHQILDLLSKRGELAQKIGEEKLKQGTRIYDPQREKEMLNDLIDSNKGPFNDNT-IKQLFKEIFKASTDLQKSENEK......................................................................................................................................................................................................................................................................................... 91
14 -17.200IDP01211 chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase BA_2958 [Bacillus anthracis str. Ames]  ali follow..  14  4..HELDQLRKQVDEINLQLLHLLNKRGEIVQKIGEQKQVQGTKRFDPVREREVLDMIAENNEGPFETSTVQHIFKTIFKASLELQEDDNRKALLVSRKKKQTFIMGPCAVES-VGQAMKDQGLKLM-LGVEGLQILRQVADEFDLAIISEILNP-----NDVEMALDYVDVIQVGARNMQNFDLLRAVGK-----------------VNKPVLLKRGATIDEFINAAEYIIAQGNDQIILRATRNTLDISAVPILKKETHLPVVVDVTHSTGRRDLLLPTAKAALAIGADAVMAEVHPDPAV------AQQMDIPEFHRFMEELKGFKNKL.......................................... 357
15 -16.900IDP00348 gene: aroA; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase lmo1600 [Listeria monocytogenes EGD-e]  ali follow..  16  2VNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNTILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEAAEYIMSQGNGKIIGIRTYEKPILKKETHLPVMVDVTHSTGRKDLLLPCAKAIEADGVMA--EVHDPAVALSDSAQQMDIPEFEEFWNAI....................................................................................................... 350
16 -13.900IDP06064 3-hydroxyacid dehydrogenase [Helicobacter pylori J99] NP_223303 [Helicobacter pylori J99]  ali follow..  14  2....................................................................................................KIGWIGLGAMGTPMATRLRDAGLEVSVYNRTESTSPIDLAAKVDLVFTMLSDKAAIDAVPKFWEQMSKKIVVNMSTIAPLESLSLAQKHQATYLEA-PVSGSVGAAKAGALLILA-AGDEEVISKLKPVLAHLGSQTFYLGKVGQGTGAKLSNSLLAQMGVAYSEALKRLGVDAESFLQIIGQSG-LFQAKKGMWLQDNYPAAFSLKLMAKDIRLAKNEAGEAMQAEKSGLGGLDMAAVYHYLEKGEH......................... 285
17 -13.400IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  9  19...................................................................................................KKVAIIGFGSQGHAHAMNLRDNGVNVTIGLREGSVSVSEASKIADVIMILAPDEIQADIFNVKPNLSEGKAIAFAHNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESKNAKNLALSYASAIAETETDLFGEQAVLCGGLSALIQAGF-ETLVEAGYEPEMAYFECLHEMKLIVDLIYQGTAEYGDYITGPKIITEETKKAMKGVLKDIQNMHAERKNMNDSLIEKTGRNLRAMMPWISAKKLVDKDK.......... 339
18 -11.700IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  18...................................................................................................KKVAIIGYGSQGHAHAQNLRDNGFDVVVGLRKGKSTVAEAAKQADVVMILLPDELQPEVYEEAPNLQAGNSLVFAHGF-NVHFDQVKPPVNVDVFLVAPSEGGAVPA----LFAVYQDATGVATEKALSYADGIGATRAGVLETTFKEETETDLFGEQAVLCGGVETLVDAGYQPELAYFECLHELKLIVDLMYEVTEDTKKAMGTVLQDGTFARGWIAEHKAGKPNFYATNEKENEHEIEVVGRKLRGMMPFVQPRVKAGVK........... 336
19 -11.700IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  17...................................................................................................KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSSVSEAVRTAQVVQMLLPDEQQAHVYKAEENLREGQMLLFSHGFNIH-FGQINPPSYVDVAMVAPQEGNGVPAL----VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVETLTEGGYRPEIAYFECLHELKLIVDLMYETKKEMKRVLTEIQ-QGEFAKKWILENQAGRPTYNAMKKAEQNHQLEKVGEELREMMSWIHAPKELVKK........... 335
20 -10.700IDP02492 gene: proC; pyrroline-5-carboxylate reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT1559c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  2....................................................................................................KICFIGGGNMAAAMIAGMTSHGYKSQ-YNINTSTSLLNTIKLADVLILAIKPQNMFELIKNIRDVTSTQVIVTVAAGIQTSAYEELFNKEISFARTIP---PSSLGYGATGIFFNKVIAADKKDLVIDIMQTMGVVTVVEDEKEIDIVAAIASSGPFQFMEHMVEAAIKQGLDKKQAEKLVVQTCLGAAQMALNTNENMSELRKNVTSKKGITYEALNIFEQ----------FNLGGIVDKAIQANIARAQQLAIEFTKLIDN.......... 274
21 -10.400IDP00140 pyrroline-5-carboxylate reductase, putative BA_0197 [Bacillus anthracis str. Ames]  ali follow..  11  5...................................................................................................HRILFIGAGRMAEAIFSGLLKTSKERARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAAGISPSYLEERLPGGTPVAWIMP---AAEIGKSISLYTMGQFVNETHQETLQLLLRGIG-TSQLCTEEEVHQLTAVTGSAPAFL-YYFAESLIEATKSYGVDEATAKHLVIQMISGSASMLEQTANLREQVTTPGGSTAEGLKAL..................................................... 244
22 -10.100IDP90565 ketol-acid reductoisomerase [Vibrio cholerae O1 biovar eltor str. N16961] VC0162 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  38...................................................................................................KKVVIVGCGAQGLNQGLNMRDSGLDVSYALRQAAISYEQLIPTADLVINLTPDKQHTSVVNAVMPLMKQGAALGYSHGFNIVEEGMQIRKDITVVMVAPKRGFGVPTL---AVHPENDPQGEGWEIAKAWAAATGGHCLASSFVAEVKSQTILCGMLQAGSIVCYEKMVADGIDPGYAGKLLQFGWETITEALKF--GGITHMMDRLSNPAKISEELKDLMRPLYNKHMDDIISGH...................................... 311
23 -9.860IDP95479 S-adenosylhomocysteinase Q5CPH1 [Cryptosporidium parvum]  ali follow..  10  191....LLKNPFRWRGMLKDLYGVSEETTTGVLRLKIMESEGKLLL-----------------PAINVNDSVTKSKFDNTYGCRQSLLHGLFNGCIQMLAGKKIVVLGYGEVGKGCAQGLSGVGARVIVTEIDQVSVLEDVVSEADIFITATGNKDVITV-EHMRKMKENAYIANIGHFDDEIVYGLENYPGIKVIEVKQNVHKFTFPDTQKSVILLCKGRL------VNLGCATGHPPLVMSMSFTNQVLAQMDLWKSRELVDRSKNTRFKKLSKELDEYVARLHLDVLGIKLTKLTETQAK-YINVSINGPYKSEDYR....................................................... 494
24 -9.840IDP06299 6-phosphogluconate dehydrogenase [Streptococcus pneumoniae TIGR4] NP_344902 [Streptococcus pneumoniae TIGR4]  ali follow..  16  1................................................................................................MTKANFGVVGMAVMGRNLALNIESRGYTVAIYNRSKEYDVESFVNSIEKPRRIMLMVQAGPGTDALPHLDKGDILIDGGNTFTIRRNEELANSGINFIGT-GVSGGEKGALEGPSIMP--GGQKEAYELVADVLEEISAKVTYIGPDGAGHYVKMVNGIEYGDMQLIAESYD......................................................................................................... 203
25 -9.710IDP02179 gene: proC; pyrroline-5-carboxylate reductase [Coxiella burnetii RSA 493] CBU_2090 [Coxiella burnetii RSA 493]  ali follow..  14  4...................................................................................................SNITFIGGGNMARNIVVGLIANGYDPN-CGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDIETKILVISLAVGVTTPLIEKWLGKASRIVRAMP---PSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTTEQAIKVLES--GNLRELFIKALTAAVNRAKELSKTV........................ 272
26 -9.630IDP02226 gene: yqjI; 6-phosphogluconate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA0164 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  1................................................................................................MENLQIGVVGVGVMGKSLALNFESKGYSVALYDISKEHIVEEFVNSLESPRKILLMVNAGEITDKVPHLDKGDILIDGGNTYTIRRNKRLAEEGINFIGA-GVSGGEEGALKGPSIMP--GGQKDAYEKVKDMLENISAKVNNEPCCSY----HYVKMVHNGIEYGDMQLICEA....................................................................................................... 199
27 -9.370IDP04044 gene: fadB/acbP; fusion product of 3-hydroxacyl-CoA dehydrogenase and acyl-CoA-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1530 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  1....MTELEKKFEEMLIAVRDLYAFYKQVKEGDNNTKKPSALKMVE-SKEDAMRGYLRVFGEEYLPAGESDNDS----PSSTIASKLEPVESKSQRKAIDKIAVLGAGTMGAQIAAHFANAKFPVVLFDLKSQEDNLELLADCDLIIEAVAIDIKESLYTKISSIKENAILASNTS--TKLAQVLPENLKVNFCGVH-FFNPPR--MPLVELIPHADTNSEILDKLETFLEKLGKSIIRAK----DTPNFIANRLGVFSMLVTCYYTEQMSIPLEVVDELTSATYRTALDVLSHVVETMKDNLEDGWQKLYNTPNWIQNLINN-----GSLGQKTKKGLYIKASDGIKVLDLGTNEYRPADKKADKEILDILA 435
28 -9.330IDP92093 adenosylhomocysteinase, putative [Toxoplasma gondii ME49] TGME49_025050 [Toxoplasma gondii ME49]  ali follow..  11  177....LQKDPQKWSRMAANLKGVSEETTTGVHRLLQMAKKKELLF-------------------INVNDCVTKSKFDNVYGCRHSLPDGIMRATDVMLGGKRVVICGFGDVGKGCAAAMKGAGARVVVTEVDSVSTLESQLATADIFISATGNKDIITA-RHMSQMKNNAIVGNIGHFDNEVMAGLLAWPGIQKVNIKPQVDRFIFPEDNHGVIVLAEGRL------LNLGCATGHPSFVMSCSFTNQTLAQLDLWDNVATKRYQNDVYLLPKELDE--KVARLHLPALGCELTTMSQEQAA-YVGIKPEGPYKSASYR....................................................... 476
29 -9.220IDP04504 2-dehydropantoate 2-reductase [Vibrio cholerae O1 biovar eltor str. N16961] VC2307 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  2....................................................................................................NIVVLGPGAVGSLWALHLHSAGHQVALWSRQAQPQNLDTLIHADLLLITVKAWQVEAALQPLLPLNRETILLFMHNGMGAVEAISESLTHFPVLFATTTHGALKAT-FGQTQVGPFNALGARCDFIADVFNHALAPVTEIQQALWRKLACAINPLTAIHQCANGALVAPEFTPIDEVTAVMQA-RDGVYQVIQATAANLSSMHQDVFHRRPTEIDFITGYVVRKGEQHG-IATPVNSALYQQIKTLEQSWSK..................... 295
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;