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Query: IDP91309 putative translocator protein PopD [Vibrio parahaemolyticus RIMD 2210633] VP1656 [Vibrio parahaemolyticus RIMD 2210633], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLDKIGGTGRGELYGLGDTIKTTKAEKTPETKLEAGAVKSNGESNVSGAGRYQLDGPKAPAISNQAQVVANLMGELAPTIDLLMSTTAKVLNGEEVIKSPSDAVSQSLSLLTLLYQVSKLSREQQVLQREIAVEANVASLQSQAAELNNSASAMIAMAVVSGVLAGATAIIGALGSFKAGKEIKTEMASNNVLKTQKAGFDQVEELMNNGNLSKTQQDQVKRAHSLAKDSIADTTAQLTSGGRKFDKLMSSNQAKNAILQALGQMANSASNVEQTKAQARSKDDEVQATRAQAAKQKADENIGFQEGLLKELRELFRSISDSQNQAWRASIPTVLast
1 -114.000IDP91309 putative translocator protein PopD [Vibrio parahaemolyticus RIMD 2210633] VP1656 [Vibrio parahaemolyticus RIMD 2210633]  ali  100  1MLDKIGGTGRGELYGLGDTIKTTKAEKTPETKLEAGAVKSNGESNVSGAGRYQLDGPKAPAISNQAQVVANLMGELAPTIDLLMSTTAKVLNGEEVIKSPSDAVSQSLSLLTLLYQVSKLSREQQVLQREIAVEANVASLQSQAAELNNSASAMIAMAVVSGVLAGATAIIGALGSFKAGKEIKTEMASNNVLKTQKAGFDQVEELMNNGNLSKTQQDQVKRAHSLAKDSIADTTAQLTSGGRKFDKLMSSNQAKNAILQALGQMANSASNVEQTKAQARSKDDEVQATRAQAAKQKADENIGFQEGLLKELRELFRSISDSQNQAWRASIPTV 334
2 -33.700IDP04224 gene: ipaC; IpaC, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05802 [Shigella flexneri]  ali follow..  13  108............................................................................................................SLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLAALSSSITGAVTQVGITGIGAKKTHSGISDQKGALRKNPQTNSSTKFLGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRTYELNTLSAQQKQNIGRATMETSAVAGNISTSGGRYASALEEEEQLISQASSKQAEEASQVSKEASQATNQLIQKLLNIIDSINQSKNSAASQIAGNI 361
3 -20.800IDP93886 methyl-accepting chemotaxis protein [Yersinia enterocolitica subsp. palearctica Y11] YP_006007026 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  9  28..................................................................................................NTDNIIADLTDIIFKMVGLMKQMRDLLNAYNQKQQILGWNIQVNAMSNKREAIDKTASAAIASGACSIVSGFISGTGAGASLKL---------------------------------------------------------------------GDIATHIGSAVGQLSAGSGKLAEGDMTRNAELFNMASGLQSSSAQTYNKNSSELADKVGEVRQNMKEFANTLTNLICQIATAA 194
4 -12.300IDP91310 putative translocator protein PopB [Vibrio parahaemolyticus RIMD 2210633] VP1657 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  15  117............................................................................................................ELAAITDKLKSAQNELKIQEVKVAKAKHEQEMAENQEKIKESAVVSIVVGAIAGALMIAGGVMGAVSMALQEPAVQDAMALEIAVAVIGAIVTFGGAAAGGAKLAAKSASKIAQKVTDIATKAAANMAKVADMGSKAATTTAKVDLTVNIGKGATDSVHAANNANVTEIQADITDLRAKMTLSQAVIDKLKEEIGKLMEDFQELMSIIMQMIQAKSETMQTVLS.. 394
5 -10.600IDP04697 gene: yopB; secreted effector protein [Yersinia pestis CO92] YPCD1.29c [Yersinia pestis CO92]  ali follow..  8  109............................................................................................................ELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSASFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAG.. 396
6 -9.080IDP90401 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_579 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  16  145.............................................................................................................IMTLLAQASAKSWSSSFQQQNQAIQNQVNAIRTQANHQAQATELQAQQSLISGITNIVGFAVSVGGGILSASKSLGGLKSAAFTNETASATTSATSSLAKTATSALDDVAGTATAVGAKATSGAASAASSAATKLTQNMAESSQTASKSAGGLGRALSSAMNISAGMAEARAEELKSLNSVQAQYASQAQQLQEQSQQSFNSALQTLQSISDSALQTTASM.... 437
7 -8.140IDP93853 secretion system effector protein SseC [Yersinia enterocolitica subsp. palearctica Y11] YP_006007025 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  9  103.....................................................................................................GLFSNLCKSISQQMERATDVQTFLRDKRVAEYQQQIDKAVEQADKAKKAGIFTAVVEVVYGALKVASGVAYLAAGTAGLVKAAAETAMGASKEKCQEVIDVAGKVQLGCECFAMAIDIFQAARAINAARTVTKGASEVLKSGASEALTDA-RGASGEIEQLAEKFGKDVSQQVSRNISLNVMETEMVEVGNMTSAAAKQAAKAEIALVRNITKSFEGIEKLVGGVAKKLAQ.. 357
8 -8.130IDP91610 gene: ECs4554; EspB protein [Escherichia coli O157:H7 str. Sakai] BAB37977 [Escherichia coli O157:H7 str. Sakai]  ali follow..  11  40.....................................................................................................DGKVDICKLMLEIQKLLGKMVTLLQDYQQKQLAQSYQIQQAVFESQNKAIEEKKAAATAALVGGIISSALGILGSFAAMNNAAKGAG----------------AEKASSASSKAAGAASEVANKALVKATESVADVAEEASSAMQKAMATTTKAASRASGVADDVAKASD----AEDLADAAEKTSRINKLLAFVAVTSLAEGTKTLPTTISESVKSTHEVNEQRAKSL.... 261
9 -7.420IDP04225 gene: ipaB; IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05803 [Shigella flexneri]  ali follow..  13  253..........................................................................................................MATFIQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEVRKAEELNVVAAAFSGGASLALAAVGLALMVGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFLKNFSSQLDDLITNEVISKQIISTHLNQAVLLGESVNSATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQANRTDVAKAILQQT 578
10 -7.400IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  9 1725..................KAKPGLSMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSS---------TESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAA--------------YRRLEEENTRLAATRRRDDKLQRQVEAERERA--VELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQLD............................... 1985
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.