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Query: IDP91318 biopolymer transport protein [Vibrio vulnificus CMCP6] VV2_0362 [Vibrio vulnificus CMCP6], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDLHSDIWPELLTSSSWWNALYSFMQQGGEVLWWLAAVAVIFWLLTIEKLLFIYCAYPRLRAETLQKWQMRHDHLSWFARSQREAWLDDAHQQLFKHLAFIKVLVAICPMLGLLGTVTGMISVFDVMATQGSSNPKLMASGISLATLPTMAGMVAALVGMFVHARLVKLCQNREVKLEQSLRSDSLast
1 -77.600IDP91318 biopolymer transport protein [Vibrio vulnificus CMCP6] VV2_0362 [Vibrio vulnificus CMCP6]  ali  100  1MDLHSDIWPELLTSSSWWNALYSFMQQGGEVLWWLAAVAVIFWLLTIEKLLFIYCAYPRLRAETLQKWQMRHDHLSWFARSQREAWLDDAHQQLFKHLAFIKVLVAICPMLGLLGTVTGMISVFDVMATQGSSNPKLMASGISLATLPTMAGMVAALVGMFVHARLVKLCQNREVKLEQSLRSDS 185
2 -19.700IDP05091 gene: motA; chemotaxis protein [Clostridium difficile 630] CD0256 [Peptoclostridium difficile 630]  ali follow..  27  124..........................................................................EINEIRSILELEIDSVEDTNNRYSKLFKTWGTFAPAFGMLGTLIGLIQMLADLT-----SPDLIASGMGKALITTFYGSLLA............................. 200
3 -6.660IDP93853 secretion system effector protein SseC [Yersinia enterocolitica subsp. palearctica Y11] YP_006007025 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  14  90..................................IQQIMSMVSSLNLGLFSNLCKSISQQMERATDVQTFLRDKRVAEYQQQIDKAVEQADKAKKAGI--FTAVFD---IVGAVEVVYGALKVAEGV----TGDPLAIASGVAY-LAAGTAGLVKA............................. 203
4 -6.300IDP04225 gene: ipaB; IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05803 [Shigella flexneri]  ali follow..  9  260...............................................................VGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVV------AAAFSGGASLALAAVGLALMVTVQAATGNSFMEQALNPIMKAVIEPLIK.. 376
5 -6.150IDP95081 Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197 4AE0_A [Corynebacterium diphtheriae]  ali follow..  14  282..............................................................................AVNVAQVIDSETADNLEK----TTAALSILPGIG---SVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGVDIGFAAYNFVESIINLFQVVHNSYNR...... 377
6 -5.670IDP95069 gene: exoU; type III secretion system effector protein ExoU [Pseudomonas fluorescens A506] AFJ59486 [Pseudomonas fluorescens A506]  ali follow..  11  2.........................................................KVSSSVVENHPPSPQISDQGAKVPLVKGVGERNLSIYRHSDGRVEVVVSPPPPAHLVGGAKGIPGMVQALEEADKLKGVKVVSG-------SSAGAICA--ALLASGMDAKAFTQLSNNLD....... 118
7 -5.600IDP01377 MSHA pilin protein MshA VC0409 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  2.........................................................................................VIMKRQGGFTLIELVVVIV-ILGILAVTA--APRFLNLQ--------------GDAREASLEGLRGAVAGAMGISYGRAAIKGIETLDYTAYTDAN 80
8 -5.600IDP92646 gene: yjaB; predicted acetyltransferase [Escherichia coli str. K-12 substr. MG1655] b4012 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  10  2.................................................VISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRTELEDLVRSFLPEAPLWVAVNERDQPVGFMLLSGQHMDALFI-------DPDVRGCGVGRVLVEHA................................... 95
9 -5.500IDP06048 gene: yajC; preprotein translocase subunit YajC [Helicobacter pylori J99] NP_224166 [Helicobacter pylori J99]  ali follow..  11  30.......................................................................................RQQQKKHKEMIEGLTKGDKIVTQGGLIVEVLKAEANFFSVKLNDDTTAKLSKNYVAFKL....................................... 88
10 -5.440IDP91634 gene: exoU; ExoU [Pseudomonas aeruginosa] AAC16023 [Pseudomonas aeruginosa]  ali follow..  10  50.......................................................ILSGKLPESVSDVRFSSPQGQGESRTLTDSAGPRQITLRQFENGVTELQLSRPPLTSLVGGAKGAPGAMLALEEKGMLDGIRSMSG-------SSAGGITA--ALLASGMSPAAFKTLSDKMD....... 168
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.