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Query: IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHFDSGLLALLFVIIALFIGALVRHLLKGSQVPYTVALLILGIAIGLAHRGNAFTDNYTLIGETLSLASEIDPHLFLFLFLPTLIFESAFAMEVHLFRRMFTQIVILAVPGLMLAIWLTAELVAWVLPEHWQWSWALCLMFGALISATDPVAVVALLKEVSSRKRLETLIEGESLLNDGTAIVFFSLFYGWVLMEFSNPGEAITAPPWQAVAQFFVVVFVGLAVGLILGGLCILWIDRVFNDPMIEISLTIAAAYSAFFISENFHVSGVVAVVTLAIMFASVGRTRISPEVAGFLHHFWEMMAHMANTLIFLLVGILVAIRVPLDDKEAWLALFVLYLGIMAIRACSITVFMPILKRIGIGITYEKAVVLCWGGLRGAVSLALAMTVASSDIIPKQIGDHVLFLCAGIVVLTILFNGSTMGHVLKWLNLSSLPPGKQATVDKAQHEVNRVLHDMLPTMMTSDFLKGADWETVKQGAKLQVLKECNSPTEITQDELHTAYLRRLLETERKHYWTQFSQGLIGKQATNKLVEAVEHALDGDPIIGPRNELFTTWRLPDWVEPLRQYNSWNKLLLKVYFRRLALGYDVARGFIQAQEALESHIDTLAPDAEIAVMVRQQVELNKRLTFERIESLRMSFPEIIQALQSQAATRLLLNRERAVINDQLKQAVLDKPEAQKLLNMVEERMAALQKESIFDKSQEQKLINDIPWARELKSKTREELTSWIEHTVYDAGQLICENQRPLNRIGIVSRGSITELYETRSDDNLEKVRTTIGPGETFALISLLTGKTNAQYVSDTPTDIMWLPVDKLKLLMNQDPNLTAVVCQLFKQLKSVLast
1 -166.000IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali  100  1MHFDSGLLALLFVIIALFIGALVRHLLKGSQVPYTVALLILGIAIGLAHRGNAFTDNYTLIGETLSLASEIDPHLFLFLFLPTLIFESAFAMEVHLFRRMFTQIVILAVPGLMLAIWLTAELVAWVLPEHWQWSWALCLMFGALISATDPVAVVALLKEVSSRKRLETLIEGESLLNDGTAIVFFSLFYGWVLMEFSNPGEAITAPPWQAVAQFFVVVFVGLAVGLILGGLCILWIDRVFNDPMIEISLTIAAAYSAFFISENFHVSGVVAVVTLAIMFASVGRTRISPEVAGFLHHFWEMMAHMANTLIFLLVGILVAIRVPLDDKEAWLALFVLYLGIMAIRACSITVFMPILKRIGIGITYEKAVVLCWGGLRGAVSLALAMTVASSDIIPKQIGDHVLFLCAGIVVLTILFNGSTMGHVLKWLNLSSLPPGKQATVDKAQHEVNRVLHDMLPTMMTSDFLKGADWETVKQGAKLQVLKECNSPTEITQDELHTAYLRRLLETERKHYWTQFSQGLIGKQATNKLVEAVEHALDGDPIIGPRNELFTTWRLPDWVEPLRQYNSWNKLLLKVYFRRLALGYDVARGFIQAQEALESHIDTLAPDAEIAVMVRQQVELNKRLTFERIESLRMSFPEIIQALQSQAATRLLLNRERAVINDQLKQAVLDKPEAQKLLNMVEERMAALQKESIFDKSQEQKLINDIPWARELKSKTREELTSWIEHTVYDAGQLICENQRPLNRIGIVSRGSITELYETRSDDNLEKVRTTIGPGETFALISLLTGKTNAQYVSDTPTDIMWLPVDKLKLLMNQDPNLTAVVCQLFKQLKSV 831
2 -20.300IDP91810 gene: crp; DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] b3357 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  11  1................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDE--EGKEMILSYLNQGDFIGELGLFEEERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQ. 126
3 -11.600IDP91880 hypothetical protein lmo0753 [Listeria monocytogenes EGD-e] NP_464280 [Listeria monocytogenes EGD-e]  ali follow..  11  2........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NIRTELQNSQLCEGITEAQLTELMNTVKEKHYKNNEILFYTDE-VTKVYILVKGNAAIAKNTSSGK-RILGKNVTEPGELAGEIYYFSHRNPDYAIVLEPTTVLEISGIDQGTLLALQNQLLVNLLKSVTRKFE. 141
4 -11.500IDP91407 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase [Vibrio vulnificus CMCP6] VV1_0729 [Vibrio vulnificus CMCP6]  ali follow..  9  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MDTRFTQQLQQLNLSADDIALVLSHAKELQLPTRHILHHQGEYPQQFYFLLDGLCHACYLTE--DGKEFSKEFYWEVDWMIGFESAILQQASLLETLTPVHLLTFPIELLQHWRSTHHPLYTHLLE........ 126
5 -7.920IDP92700 hypothetical protein SAVC_07990 [Staphylococcus aureus subsp. aureus VC40] YP_005291191 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  7 1522.................................................................................................................................................................................................................................................................................................................................................................................................EIEQAEHATDEEKQVALNQLANNE-----IDQAIANNDVKRVETNGIATLKGVIKPEAQQAIKASAENQVESIKDTPHATVDELDEANQLISDTLKQAQQEIENTNQDAAVTDVRNQTIKAIEQI-----PKVRRKRAALDSIEENNKNQLDAIRNTLDTTQDERDVAIDTLNKIVNT--------IKNDIAQNKTNAEVDRTETDGNDNIKVILPKVQVKPAARQSVGVKAEEERLAAKHLVEQALNQAIDQINHADKTAQVNQDSINAQNIISKIKPATTVKATALQQIQNIATNKINLIKANN------------------EATDEEQNIAIAQVEKELIKAKQQIASAVTNADVAYLLHDEKNEIREIEPVINRKASAREQLTT-QAIEANIQATVEERNSILDRSNAQVDKTASLNLQTI-IKKPDAEKTINDDLARVTA. 1983
6 -7.490CPX_91687_91742 Complex of PLMN_HUMAN with Q6V4L9_STRPY [Undefined organism]  ali follow..  8  667..............................................................................................................................................ALLKLSSPAVITDKVIPACLPSPNYVVITG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTE----------LCAGHLAGGTDS-----CQGDS------------LVCFEKDKYILQGVTS----GLGCARPNKPGVYVRVSRFVTWIEGVMRNNXRKLKTGTASVAVALTVLGAGFANQTEVKAADHPSYTAAKDEVLSKFSVPGHVWAHEREKNDKLSSENEGLKAGLQEKEQELKNLKADVEKLKDAAELERLKNERHDHDELERL-----RHDHDKREAERKALEDKLADKQEHLDGALRYINEKEAERKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKEEKQISDASRQGLRRDLDASREAKK-----------QVEKDLADLTAELDKVKEEKQISDASRQGLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLAKQA--EELAKLRAEKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLP----------------------STGETT................................................................................................. 1202
7 -7.360IDP05470 conserved domain protein [Bacillus anthracis str. Ames] BA_2451 [Bacillus anthracis str. Ames]  ali follow..  20  1............................................................................MLKLTPTNIMAHTYCLDEQQWKQAVSPIQSTAVIG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 35
8 -7.260IDP00146 gene: viuG; vibriobactin and enterobactin ABC transporter, permease protein VC0778 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  24.......................................................................................GAYTLRVERRNIAVALVLSLIVLALMILATCVG-----------KLPISISDVTAILLGEVTSGFKRQVLLDIRLPRIFTALFAGAAL---GLSGAIFQSISRNPLGSPD---------------------IIGFTSGAATGALLQIILFSGSGVAVVFSAIAVMTAIAVYLLSVKSGTVGRYRLVLTGIGVGSVLTA-KGSLDSAITANLW-LIKSLARSLQMLEMGDEIARQLGVVVEPIRLFMILAAVTLAALATGAIAFIALAAPQLAARLRQTANIPLVSAGLMGACLLLGADLLTQWMPLALTLPIGRITGLVGGMYLLILLM............................................................................................................................................................................................................................................................................................................................................................................................................................... 352
9 -6.980IDP00145 gene: viuD; vibriobactin and enterobactin ABC transporter, permease protein VC0777 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  29.......................................................................................................LMLVALMGLTISSVFVG-----------SRDIPYAVTFDALFHFDEQNTQHLLVHYLRVPRTGLAILVGAAL---GAAGVIMQAMTRNPLADPG---------------------ILGVNAGAILMVVIGIAGTDMLHYLWFGLFGAAATSVGVYLLAGINQSPNPVRVVLAGAAMTVVLLS-NSAQEVFNQFRHWSIAILLARGLDTVVLGHDAGKALGVNPLWIWIASAAVVTLLAGTATAALGLTAPHLARL---VGAEHRRLLPYSMLLGALLLLGADLAGRLIGSNDEISAGIMVALIGGPVFVLLVRRWKLSHL........................................................................................................................................................................................................................................................................................................................................................................................................................ 350
10 -6.720IDP92565 nonstructural protein 1, partial [Dengue virus 2] AAA66406 [Dengue virus 2]  ali follow..  12  5....................................LEMDFDFCEGTTVVVTEDCGNRGPSLRTTTASGKLITE------LPPLRYRGEYGMEIRPLKEKEENLVVTAGHGQILGVLGMALFLEEMLRTRVG---TKHAILLVAVS-------------------FVTLITGNMSFRD---LGRVMVMVGATMTDDIGMGVTYLALL--------------AAFKVRPTFAAGLLLRKLTSKELMMTTIGIVLLSQSTIPETILELTDALALGMMVLKMVRKMEKYLCVPNAVILQNAWKVS-----CTILAVVSVSPLFLTSSQQKADWIPLALTIKGLNPTAIFLTTLSRTNKKR-----SWPLNEAIMAVGMVSILASSLL---------KNDIPMTGPLVAGGLLTVCYVLTGRSADLELERAA................................................................................................................................................................................................................................................................................................................................................................................................................... 359
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.