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Query: IDP91367 NAD-specific glutamate dehydrogenase [Vibrio vulnificus CMCP6] VV1_2638 [Vibrio vulnificus CMCP6], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLGLVKAQQVKNTVIVPVGAKGGFVCKRQHTMTNRDEIFAEGQRCYKRFIRALLDVSDNIIEGEVIPPKSVVRHDEDDPYLVVAADKGTATFSDLANSVSAEYNFWLGDAFASGGSNGYDHKAMGITAKGGWESVKRHFREMGIDCQTTDFTAIGVGDMAGDVFGNGMLLSKHIRLQAAFNHLHIFIDPNPDSASSWEERDRLFQLPRSSWEDYNPKLISKGGGVFSRKAKSITLTPEIQKMLGTKKTSLAPNELIKMILKMDVDLLWNGGIGTYVKASSETHTDVGDRANDVLRIDGRDLNAKVVGEGGNLGMTQKGRIEYALKGGRVNTDFVDNVGGVDCSDNEVNIKIFLNGLVSNGDMTVKQRNKILESMQDEVGDIVLDDAYRQSESISVTEQQGVSVVKEQIRFIHTMEKAGYLDRVLENIPDDETLLEREKLGQGLTRPELAVLVAYGKMVLKEQLANDEIANDEFHGQQLIQYFPSELRNKFANQMSSHPLRAEIIATSLANQMVNEMGCNFVTRLQQETGASVVDIANAYSASREIYGLGEILAQTRELDNIASADAQYEIMFHVRRMLRRVARWLLRNRSGKNTVSELIAKYQADVDVITHSLDNMLVVSEVEEHDELAESWICRGVEAKLASRVSRLTSLQSALDISSVARETNKTVEEAAKLYFNLGDRLSLHWFLKQINGQAVDNNWQALARAAFREDLDWQQRLLTAQVLNCMQAESKGDVMEALETWMERNETSLHRWESILNEFKVGSVHEFAKFSVALRELVLLNLNCSSNSLast
1 -216.000IDP91367 NAD-specific glutamate dehydrogenase [Vibrio vulnificus CMCP6] VV1_2638 [Vibrio vulnificus CMCP6]  ali  100  1MLGLVKAQQVKNTVIVPVGAKGGFVCKRQHTMTNRDEIFAEGQRCYKRFIRALLDVSDNIIEGEVIPPKSVVRHDEDDPYLVVAADKGTATFSDLANSVSAEYNFWLGDAFASGGSNGYDHKAMGITAKGGWESVKRHFREMGIDCQTTDFTAIGVGDMAGDVFGNGMLLSKHIRLQAAFNHLHIFIDPNPDSASSWEERDRLFQLPRSSWEDYNPKLISKGGGVFSRKAKSITLTPEIQKMLGTKKTSLAPNELIKMILKMDVDLLWNGGIGTYVKASSETHTDVGDRANDVLRIDGRDLNAKVVGEGGNLGMTQKGRIEYALKGGRVNTDFVDNVGGVDCSDNEVNIKIFLNGLVSNGDMTVKQRNKILESMQDEVGDIVLDDAYRQSESISVTEQQGVSVVKEQIRFIHTMEKAGYLDRVLENIPDDETLLEREKLGQGLTRPELAVLVAYGKMVLKEQLANDEIANDEFHGQQLIQYFPSELRNKFANQMSSHPLRAEIIATSLANQMVNEMGCNFVTRLQQETGASVVDIANAYSASREIYGLGEILAQTRELDNIASADAQYEIMFHVRRMLRRVARWLLRNRSGKNTVSELIAKYQADVDVITHSLDNMLVVSEVEEHDELAESWICRGVEAKLASRVSRLTSLQSALDISSVARETNKTVEEAAKLYFNLGDRLSLHWFLKQINGQAVDNNWQALARAAFREDLDWQQRLLTAQVLNCMQAESKGDVMEALETWMERNETSLHRWESILNEFKVGSVHEFAKFSVALRELVLLNLNCSSNS 789
2 -34.800IDP02649 putative glutamic dehyrogenase-like protein [Salmonella typhimurium LT2] STM1795 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  108VMALSAWMTIKCAALPYGGAKGGIRVDPFSLSE------GELERLTRRYTSEIGIIIGPQKD-------------------IPAPDVGTNVMAWMMDTYSMNHGT---TGVVTGKPIGGSLGREKATGRGVFVSGLEAARRANIAVEGARVAVQGFGNVGSEAA--RLFAGAGARVVAIQDHTATLFNATGIDMKALTAWQ---TEHKQIAGFPGAETIAS-------------------------------------------DAFWRLEMDILIPAALE---------GQITRQRAEALTCKLVLEGANGPTYPDADDVLASRGILVVPDVVCNAGGVTVSYFEWVQDM------ASFFWSEEEINARMDKIMTDAIVHVWEKAAEKSCSLRTA-----AYIVACERILLARKDRGIYP................................................................................................................................................................................................................................................................................................................................................................................ 440
3 -34.700IDP02337 gene: gdhA; glutamate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1511 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  18  98VKALSIWMSLKCGILPYGGGKGGIICDPREMSF------RELERLSRGYVRAISQIVGPTKD-------------------IPAPDVFTNIMAWMMDEYSRIDEF---PGFITGKPLGGSHGRETATAKGVTICIREAAKKRDIDIKGARVVVQGFGNAGSFLA--KFMHDAGAKVIAISDAYGALHDPNGLDIDYLLDRRD----SFGTVTKLFNNTISN-------------------------------------------KELLELDCDILVPAAIE---------NQITEENANDIKAKIVVEAANGPTTLEATKILTDRGILLVPDVLASAGGVTVSYFEWVQNN------QGYYWTEEEVEQRLEKVMVRSFDSIYETAQVRKVNMRLA-----AYMVGVRKMAEASRFRGWV................................................................................................................................................................................................................................................................................................................................................................................. 428
4 -32.500IDP92108 NADP-specific glutamate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_093180 [Toxoplasma gondii ME49]  ali follow..  14  142MKFLGFEQIFKNSLLSIGGAKGGSDFDPKGRSD------NEVMRFCQAFMTELSRYIGPNRD-------------------VPAGDIGVGYLFGQYKLLKAGQ-----EGALTGKDKGGSAMRPEATGYGCVYFVLELLKAQKEGIKGMRCAISGSGNVALYAG--EKLATLGAKVMTFSDSSGYIVNEKGFPLGQIQRLKEMKETRSSTRVSEFAAKYSTV-------------------------KFVPDKRA------------WEVPCDIAFPCATQ-NEISEEDAQLL-----IDNGCRIVAEGANMPTTRDAIRLFKQHGVILCPGKAANAGGVAVSGLEMSQNAMRIEW------TREVVDEKLRQIMASIFSKCRSYAAKFGE--NEFDLVTGANVAGFVKVADCVIDQGYI................................................................................................................................................................................................................................................................................................................................................................................. 489
5 -8.540IDP91816 gene: maeB; fused malic enzyme predicted oxidoreductase/predicted phosphotransacetylase [Escherichia coli str. K-12 substr. MG1655] b2463 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  9  76VLGLGNIGALAGKPVMEG--KGVLF-------------------------KKFAGIDVFDIEVDELDPDKFI-----EVVAALEPTFGGINLEDIKAPEC----FYIEQKLRERMNIPVFHDDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVVCDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDD---------------------VIEGADIFLGCSGPKVLTQEMVKKMARAPM---------ILALANPEPEIL----------PLAKEVRPDAIICTGRSDYPNQVNNVLCFPF--IFRGALDVGATAINEEMKLAAVRAIAELAHAEQSEVVAGDQDLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMESGVATRNLFMKPIFSQARKAPKRVVLPEGEEARVLHATQELVTLGLAKPILIGRPNVIEMRIQKLGLESDPRFKEYWTEYFQIMKRRGVTQEQAQRALISNMVQRGEADAMI--CGTVGDYHEHFSVVKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVR-LLSHSNFGSSDCPSSSKMRQALELVRERAPELMIDGEMHGDAALVEAIRNDRMPDSSLKGSANI-LVMPNMEAARISYNLLRVSSSEGVTVGPV-----LMGVAKPVHVLTPIASVRRIVNMVALAVVEAQTQPL...................................................................... 759
6 -7.430IDP92127 aminopeptidase N, putative [Toxoplasma gondii ME49] TGME49_021310 [Toxoplasma gondii ME49]  ali follow..  10  153LSGLYVSDGVLVTHNEAQGFRRITFFRPDVMTQWRVRLTARKQDYPVLLSNGELVESGDDPTDPEKHFSVFSDPHKKPSYLFA-----AGKLHSVGHDYEKRDKSLVKVSVWS-TPENVAKLSWALQS--IIRAMKGDEILFGRDYDSNVFHIVCVNGFNAGAMEN----------LNIFNCDSLLADPTTTTDEEYREYFHNWSGNRVTLRDWTELTLKEGLTVYQFREDSGPLAHPVRPDHYASVDNLKGAEIFRMYATLLGPSAFRKGLNLYFSRYDGQAATCENFRSAMEEASGRNLSQEVEITGFTFDKTRKQFSFTVTQKPPPMSDYEIRMYGQKAQFLHIPIRVSFINRRTKKPELYVGQRTTVLELRGETQTFTFTDTEEEPLVAPLQSFSAPVKLTVPSQTEEDL---------AILIGASFDPFTRWNAFQFLALQILKERMATKKKE-----------TSGVLSPAFQQGLHFALRDMPLSPAFTALLLTLPSYSRLEQDAPRPLDPDAIISARRSLLRDIYYFHRNALDE----------PKVDDRERDRQLESAEDPEQWQRRALRSILLEYVTANRDERSAKLALKHFKDAMTDKIAALHVLVDLPFNKEREEALHLFYEEARGTTRGNTARTEEQEAEAENEIKSIAVLCNPQ--LLTKWFALQARSSLPETLDRIRELEKHPEYKPLVPNFVRALYSTFMHGAFVFLMDRINPRTASRAATAFLSWKKYDKERQGRARSVLERLANLPGISNDLKDVVDRALAA......... 966
7 -5.970IDP92594 phosphoglucomutase/parafusin related protein 1, putative [Toxoplasma gondii ME49] TGME49_085980 [Toxoplasma gondii ME49]  ali follow..  8  45..........................................................................................................................................................GTSGLRKKTKVFMQKDYLANFAQSVFNC-----------------LPEEEKKGGTLLVSGDGRFFSHE---AIYEICSIAAGNGVGRVW-IGLNGLASTPACSAIIREREN---ICFGGFLLTASHNPGGIDEDFGVKYDTANGAPG-WEKSKTISTIKYAKLPKFSIDKLGVQVNIDGAFQVEVIDPIEDWLKLMKEAFHFPAIKRLLALPHFSFVYDSMHGVSGPYAEKLFIEEFGAKRECLMRQDPLPDFGGHHPDPNLTYAEELVAKMKVLHPDQVDASTPLFGAAGDGDCDRNMIL---------RGFFVTPSDSVALIALYAEKCIPYFFVDKATGKGGLTGLARSMPTSRALD--------NVAKKLNKDVYETPTGWKYFTNLMDASRI-VHVREKDGLWAVLAWLSILAYRNGCMGDVEKERELLQEGKSVDVSPPATKETDFVSVQQIVEEFWKEYGRNFYCRYDFENKDSASAHEMLQALEELSKSSPA----EITGKVASHVDENLLKEMEIESMDWFKYTDPVDKQVSDHQ---------------GVRLFLKGGSRIIWRLSGTGSTGATIRVYMERYEPDASKVLQDERTA-------LKDIAAFALQFCDMKKYIGTET 632
8 -5.910IDP05147 methionyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4903 [Bacillus anthracis str. Sterne]  ali follow..  11  51.............................................................................................................................................................................................................................................GTPIAIRAKQEGVTAKEIANKYHEEFERCFRNLGFDCYTRTDSEHHHETVQNVFLRLLEEGTQFLPDCYVEGVCPHCHEEAR-QCDACSAILDPLDLLEKKCKLCHTFQEQIKRAVEIAKQTGTWRDNAIQLTERYVKEGLLDRAVSRDLPIGVPIPVEGYEDKKIYVWIEAVTGYYSASKHWAEEREFWDGEAKTYYVHGKDNIPFHSVIAVLLGIGEGTIPRHIVSNEVEKRKLSTSKNWAVWVPDILERYDPDSIRYFLIVNAFIYSHNSELLGAYG-NFVNRTLKFIEKYYGGIMPKGSIDVELKDYKHVGEAIEQTKFKVALESIFDAVRFANKYFDERQPWKEREDDPV-SCEETIYNCVYLIANFANLLEPFLPFSSERIRNTLSIVNRNWEPQHTLPSRIDSVQPLFERIDVKQIECELEK........................................................................................................................... 538
9 -5.580IDP91170 similar to oxidoreductase lmo2236 [Listeria monocytogenes]  ali follow..  10  68................................................................................VTMPCKSEVLKHMDDLSPAARMIGAVNTIVNEDGKLTGHITDGLGFI---------ANLRDASVDVAGKKMTIIGAGGAATAIQVQ--CALDGAKEITIFNIKDAFYDKAKQTVASIKQEVPNCIVHIYDLNDTEKLNAEITTSDILVNATLVGMHPNEHETPISDTSVFRKELIV-------ADIIYNPKKTQLLLDAEAAGCKTVGGLGMLLWQGAEAYKL...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 272
10 -5.420IDP05233 gene: dnaG; DNA primase [Listeria monocytogenes EGD-e] lmo1455 [Listeria monocytogenes EGD-e]  ali follow..  10  29.........................................................................................................................KKQGRNYSGLCPFHGEKTPSFSVSPEKQIFHCFGCG-KGGNVFSDGLTFVESVKKVADMSHLDV--RDTSNLPKETSETAKMVEMHQLTAKLYHYILMTEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLEKRGMDLQLAGAAGLLSE---RDDGQMVDRFRNRIMFPITNDRGQIIAFSGNSPETPEARQAIRKQEEITFMDVISEEAGVQ------------NAVASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAY---------------KAGTLLVERNRLDVFVLQLPAGKD---RASGPEKFKEVYKQQRMTWTAFKIHYLRKERNLQNETEQIGYIDDCLREI-------AKLDQAVERELYLKQLADEF------TLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMPQEGAEMLFSFEQPAQKLSAHTISEQQLMKAMMESRDNFLLIKQLLGD-HDNYEALYTYLIGYFAEGNDADPTKFMDSVPDAAMKGLISSLEMV-------------DEQGKPQFEDYIRSLKRYKLEQKKKELEQELATYNREN--DNENEIRVMLEIVQLNRQLNS.................................................................... 622
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.