current user: public
If you have questions about the server, please let us know.

Query: IDP91379 Zn-dependent protease with chaperone function [Vibrio vulnificus CMCP6] VV1_1473 [Vibrio vulnificus CMCP6], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330
# Score Template Links and tools%idFirst MRIFGTAFPPRSSERCEAEIDTSQPHLLALHVNGEIFSADYHYLHISEPVGRLPVRISFPNGWVFVTEPSTALSKWLGFHKKQSFVDRMEGNIPAWILSAMVCLAVIAGCYYYLLPWGSQKIAESLPDSLSIAVGEQVLDSLDLQLQPSQLPEEQQSAIRQRVQQFAQVLPELPYDIKVEFRSMPEGANAFALPGGTIVLLDELVALAQTQQQLDSIILHEMGHVHHRHMMKQVVHSTILSVAVSLITGESSGIVDNLAGVGVFIVSNGQSREAETQADLYAKKAMKQIYGTSEPLAEMFELFKTQEMMDIPEWFSSHPNFSERIQAAREELast
1 -122.000IDP91379 Zn-dependent protease with chaperone function [Vibrio vulnificus CMCP6] VV1_1473 [Vibrio vulnificus CMCP6]  ali  100  1MRIFGTAFPPRSSERCEAEIDTSQPHLLALHVNGEIFSADYHYLHISEPVGRLPVRISFPNGWVFVTEPSTALSKWLGFHKKQSFVDRMEGNIPAWILSAMVCLAVIAGCYYYLLPWGSQKIAESLPDSLSIAVGEQVLDSLDLQLQPSQLPEEQQSAIRQRVQQFAQVLPELPYDIKVEFRSMPEGANAFALPGGTIVLLDELVALAQTQQQLDSIILHEMGHVHHRHMMKQVVHSTILSVAVSLITGESSGIVDNLAGVGVFIVSNGQSREAETQADLYAKKAMKQIYGTSEPLAEMFELFKTQEMMDIPEWFSSHPNFSERIQAAREE 331
2 -114.000IDP00182 M48 peptidase family protein YPO0398 [Yersinia pestis CO92]  ali follow..  30  1MIVEGYYQYPGRAAREAARLLLNEIGDNVLLRDGEQHYFSLSQLNVSSSLGSIPLNLTFPDGGRFVPSDDALFRKWLYQQRSPGVVHRLERHKSGVLLTLLITPLLILAYIYWLLPWASSEIALRIPTTAEQKLGEHSLEWLQQSGKPSALPAERQEAIQQLFLQVMPPQMRERTPLKLVLMTAPTTANAFMLPDGTMVISDDLIKLTTSDDALAAVMLHEMGHHAHRHSMQMVVRSSLVALTFMWMTGDVNGIGDTLLQSAAFIHEMQFSRTIESEADSWAIAEMQREKRSLLAMEDIYHALQQETRAGIPEWLSSHPDMPARLDVIRAA 341
3 -76.100IDP00190 putative lipoprotein YPO0927 [Yersinia pestis CO92]  ali follow..  20  6..................................................................................................SMIALSLAALLSGCQSLNTAQAFQAATLNDADVKALSEKSCVEMDQKAQIASADSQYGKRMAKIAAALGDNINGTPANYKVY---VTKDVNAWAMANGCIRVYSGLMDMM-TDNEVEGVVGHEMGHVALGHTRKAMQVAYGTTALRTAIASAGGVSQSQLADLGEKLVNAQFSQKQESEADDYSFDLLKKRGIDPNGLVTSFEKLASMEAGRNSSMFDDHPSSQARAEHIRQR 245
4 -56.900IDP00225 putative exported protein YPO3069 [Yersinia pestis CO92]  ali follow..  14  1....................................................................................MIATLLSSLLLTGPISAGAETQGLLPAQDLLPDIGTSAGATLSIDQEMAMGDFYVRQMRASAPLIY-DPLLTQYINTLGNRLVANANSVRTPFHFYLVNNDQ-INAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEGVLGSILLTMASPQAGMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRSGFDPQAMPNFLQKLADQSVSKPPEMLLTHPLPDSRLSDARNR 257
5 -32.600IDP00206 putative heat shock protein YPO1706 [Yersinia pestis CO92]  ali follow..  16  58.............................................................................................................................................ALRSVGGEVIERPRNETEYWLLETVRRQSQQVGIAMPQVAIYQAPDINAFAT-ASLVAVSTGLLQNM-SRDEAEAVIAHEISHVANGDMVTMTLIQGVVNTFVPMVYFAVSMVLELVFGILASIITMWFSRHREFHADAGSAKLVGR-----EKMIAALQRLKTSYEPQEAGLFMSHPPLDKRIEALRS. 288
6 -32.600IDP91935 heat shock protein HtpX [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100001517 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  17  63...........................................................................................................................................EIVMSMNGAREVDEQTAPDLYHVVEDMALVAQIPMPRIFII---DDPALNAFAT-NAAVAATSGLLAIM-NREELEAVMGHEVSHIRNYDIRISTIAVALASAITMLIMLVVSLLAIVLAPLAATLVQLAISRQREFLADASSVELTR----NPQGMINALDKLDNSKGGGFQKLFYTHPPISERIERLKQ. 298
7 -14.500IDP00224 putative membrane protein YPO3058 [Yersinia pestis CO92]  ali follow..  13  7...................................................................RESNNVEDRRGNASGGGGFRPPIRGKGGVAILIIVLVAGYYGVDLTPLLNGGDPLSQTQTPPRSPKAVSTQDDQYAKFTS------VILADTEDTWKPIFQKMGRTYQDPKLVMYRGASVMGPFYCPDSTIYIDLSFYEDMKNDFAQAYVIAHEVGHVQHLMGIDAKVRQQQQG--------------------VSQAEGNRLSVKMELQADCFAGVWGKAMEEQQVLEAGDLQRLQQQSQGRVVPDSFTHGTSQQRYTWFKR. 272
8 -13.200IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e]  ali follow..  10  1........................................................................................MKKILSLLVAFVCLWSILLPGQEADAAAKINSWDLVDSSKHLDYSGNSKYMSFIQSGANTWNAYKKGV---------IRPASGANKSDVYCSDISANNNINATTYSNGKITFNKKNMDKK-NNAGKQNVATHELGHGLRGHNASSDVMYQYSTSKTTLSTNDKQSYDAA.......................................................................... 160
9 -11.600IDP91447 ribosomal protein L22 [Vibrio vulnificus CMCP6] VV1_0393 [Vibrio vulnificus CMCP6]  ali follow..  10  19...........................................................................................................................................................DLSTPEHLIALAEDKGLETDPVNVSELAKHLGITVRYEPSGSLKKEKKTVNSLHHPHRQRFTIAHEIAHRIRHAANNDCFED-------------------------TTFFRNGETNWMEAEANDFAASLL----MPKDAFDNFIANVSSKVEDVAMHFQVSSHAVRIRAKVL... 173
10 -11.500IDP00191 conserved hypothetical protein YPO0932 [Yersinia pestis CO92]  ali follow..  19  1.............................................................................................................................................MSTLRIPIALQQAVMQCLRHYLQLANQHLGTAYPEPKVNYHQRGTNAGSAYLQSFEIRLNPVLLLE-NKQPFIDEVVPHELAHLLAPHGKRWMMEQVL............................................................................................ 107
11 -10.500IDP05145 hypothetical protein BAS4679 [Bacillus anthracis str. Sterne] BAS4679 [Bacillus anthracis str. Sterne]  ali follow..  9  112............................................................................................................................................EVKEEVLQQRQDRGYHEDLWDMYRTLIPAKYRGNITEFDLITDGYDGVVAHVMLPKDWTLSLDTLDSAVNIDEVMKTLIHETAHVTYRNKCGNLFLQEGCAKENSYIH-ESEETQIEFFKEKHDEFVSQYGTTNVAEADTFTAFILQDSKKVKEGTELKYKKIA---------FFYQFPELVKMRAEVLSG 343
12 -10.200IDP02340 hypothetical protein GBAA2884 [Bacillus anthracis str. `Ames Ancestor`] GBAA2884 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  47.......................................................................................................................................ERLSNAINLYPAKIEDIRIIAESLPIIIQEVTNAYHNFDVKMKFHLFVGGFGSNAFVEREIIGDMFFAAEKLSPDLNHLRVIVAHEIGHIYHNVMLQNDGKAEWADATVNLYRGIATYLSKQIIKGLNESVYYSYDNDGEENEEHIKKRFLERLGY-----TAFVEYIVQALGESEVFIFWNKYNLKSSVLDWLSK 281
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.