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Query: IDP91447 ribosomal protein L22 [Vibrio vulnificus CMCP6] VV1_0393 [Vibrio vulnificus CMCP6], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAFVRKSGRKTQTTTEFEDLSTPEHLIALAEDKGLETDPVNVSELAKHLGITVRYEPMQDEESGSLKKEKKSGSWVMTVNSLHHPHRQRFTIAHEIAHRIRHAANNDCFEDTTFFRNGETNWMEAEANDFAASLLMPKDAFDNFIANVSSKVEDVAMHFQVSSHAVRIRAKVLGYDGHNLLast
1 -89.900IDP91447 ribosomal protein L22 [Vibrio vulnificus CMCP6] VV1_0393 [Vibrio vulnificus CMCP6]  ali  100  1MAFVRKSGRKTQTTTEFEDLSTPEHLIALAEDKGLETDPVNVSELAKHLGITVRYEPMQDEESGSLKKEKKSGSWVMTVNSLHHPHRQRFTIAHEIAHRIRHAANNDCFEDTTFFRNGETNWMEAEANDFAASLLMPKDAFDNFIANVSSKVEDVAMHFQVSSHAVRIRAKVLGYDGHNL 180
2 -14.800IDP02828 hypothetical protein GBAA4243 [Bacillus anthracis str. `Ames Ancestor`] GBAA4243 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  117............................................................................IVLTNSAAPMKNIYTLAHEIGHILFTRRVHGKLTHADPHSPTGSEHHPSPTN------LMYPIVPRPENVHIQSLLTS-EQKALSLQSSLLQRKKQ........ 205
3 -13.700IDP02151 hypothetical protein GBAA3159 [Bacillus anthracis str. `Ames Ancestor`] GBAA3159 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  50.................GSSIIKSGWQAADSAWY-TASRINFTVSASSVNTLNSWFESSSTYYGRMKTSYNTSKFAGDINNITKSNVAKSTGVHEFGHAI-HNS--------------------------GTSIMNSNRNRTTMHVPQTDDKNGVNAIY..................... 175
4 -12.500IDP00224 putative membrane protein YPO3058 [Yersinia pestis CO92]  ali follow..  23  165.........................................................................................YVIAHEVGHHVDAKVRQQQQGVSQAEGNRLSVKMELQADCFAGVWG............................................. 216
5 -11.600IDP91379 Zn-dependent protease with chaperone function [Vibrio vulnificus CMCP6] VV1_1473 [Vibrio vulnificus CMCP6]  ali follow..  10  156..................QSAIRQRVQQFAQVLPELPYDIKVEFRSMPEGANAFALP-----GGTIVLLDE------LVALAQTQQQLDSIILHEMGHVHHRHMMKQVVHSVFIVSNGQSREAETQADLYAKKAMGTSEPLAEMFELFKTQEMMDIPEWFSSHPNFSERIQAA....... 328
6 -11.000IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e]  ali follow..  46.................GNSKYMSFIQSGANTWN-AYKKGVIRPASGANKSDVYCSDISANNNINATTYSNGK---ITFNKKNNNAGKQNVATHELGHGL-HNA--------------------------SSDVMYQYSTSKTTLST--NDKQSYDAAYK.................... 162
7 -10.700IDP00800 oligoendopeptidase F, putative SACOL1419 [Staphylococcus aureus subsp. aureus COL]  ali follow..  312.................PEISIEDSKNYIFGALS------DYTNMLREA---IDFAQNKGKDTGAFCASPYFTHSYVFIS--TGKMAEAFVLAHELGH--GHFTLAQ--KHQPYLESEASMYFVEAPSTMNEMLMA--NYLFNTSDNPRFKRWIIGSILSRTYYHNMVTHLLEAAYQREV 468
8 -10.400IDP00182 M48 peptidase family protein YPO0398 [Yersinia pestis CO92]  ali follow..  140LEWLQQSGFKPSALPAERQEAIQQLFLQVMPPQMRQERPLKLVLMTAPTTANAFMLP-----DGTMVISDD------LIKLTTSDDALAAVMLHEMGHHAHRHSMQMVVRSAFIHEMQFSRTIESEADSWAIAEMQREKRSLLAMEDIYHALQQTTTEWLSSHPDMPARLDVIRAAREKM 345
9 -10.400IDP01176 peptidase, putative BA_2869 [Bacillus anthracis str. Ames]  ali follow..  13  57ITWHEIMTVKENNEAIIPFSVAVQNIYGAFKNID------ELAELARNA---VDAEPRENKPPGGFCAPFFSEKESRISMRYDGSIDSVRILAHELGHAW-HFYNMSFEQSSSFLDDYLPMSTAESASIFFETLLI--NYLIQTTDSIDIKKSLLSWKIRNCFNYV.............. 216
10 -10.200IDP00190 putative lipoprotein YPO0927 [Yersinia pestis CO92]  ali follow..  50......................EKSCVEMDQKAQIASADSQYGKRMAKIAAALGDNIYVTKDVNAWAMANGCIRVYSGLMDMMTDNEVEGVVGHEMGHVALGHTRKAMQVAEKLVNAQFSQKQESEADDYSFDLLKPNGLV-TSFEKLASMEAGRNSSMFDDHPSSQARAEHI....... 242
11 -9.790IDP01172 gene: pepF-1; oligoendopeptidase F BA_1206 [Bacillus anthracis str. Ames]  ali follow..  13  320.................MNVKYEEAQDMLLKSLH------EYVDILKEA---VDVYENKGKRSGAYSSGAYGTNPYILMN--HDNVNNLFTLAHEFGH--VHSYYTR--KTQPHVYGDYSIFVAEVASTCNEALLN--DYLLKTTEDKKERLYLLNHYLE-GFRGTVFRQTMFAEFEHII 475
12 -9.690IDP01872 oligoendopeptidase F, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA5706 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  320.................PAITYEEAGKLIQDSLQ------EYSAIIKKG---VDLADNVGKSTGAFCSSPYGSHPYILIT--QNTMRGCFTLAHEFGH--GHFYLAN--KNQRIMNVRPSMYFVEAPSTMNELLLA--QHLLATTDDKRMRRWVILQLLGTYYHNF.............. 462
13 -9.620IDP06297 oligoendopeptidase F [Streptococcus pneumoniae TIGR4] NP_345460 [Streptococcus pneumoniae TIGR4]  ali follow..  12  311.................YSFTYQEALKKAEDALA------DYLSRVKRA---IDVYENQGKRSGAYSGGSYDTNAFMLLN--QDNLDNLFTLVHETGH--MHSSYTR--ETQPYVYGDYSIFLAEIASTTNENILT--EKLLEEVEDDATRFAILNNFLD-GFRGTVFRQTQFAEFEHAI 466
14 -9.430IDP02427 gene: pepF-2; oligoendopeptidase F [Bacillus anthracis str. `Ames Ancestor`] GBAA3553 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  313.................QDIPYDNAFDIMIESLA------EYIETLKSF---IDVRETPGKCSGAYNFGVYGVHPFILLN--HDDLNSLFTLTHECGH--MHTHYSH--GYQPRISAHYTIFVAEVASTVNEVLLIHHHLVNHFIEKFKGTFFTQIMFAEFEKITHEMAQQGKPLNAQVF 483
15 -9.410IDP91565 gene: ECs0850; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34273 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  58...............ALDKIGSTETGRVLLN---------AIESISRLKSETVVIHLNSSRLGVMAHRDIDGSDFHCNLNAVEYPCGEGTIVFHELLHNLNGERLKVESSRAESQKYSPLLLEEARTNKFHEEIGMPRRT........................................ 204

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.