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Query: IDP91610 gene: ECs4554; EspB protein [Escherichia coli O157:H7 str. Sakai] BAB37977 [Escherichia coli O157:H7 str. Sakai], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTIDNTQVTMVNSASESTTGASSAVAASALSIDSSLLTDGKVDICKLMLEIQKLLGKMVTLLQDYQQKQLAQSYQIQQAVFESQNKAIEEKKAAATAALVGGIISSALGILGSFAAMNNAAKGAGEIAEKASSASSKAAGAASEVANKALVKATESVADVAEEASSAMQKAMATTTKAASRASGVADDVAKASDFAEDLADAAEKTSRINKLLNSVDKLTNTTAFVAVTSLAEGTKTLPTTISESVKSTHEVNEQRAKSLENFQQGNLELYKQDVRRTQDDITTRLRDITSAVRDLLEVQNRMGQSGRLAGLast
1 -89.100IDP91610 gene: ECs4554; EspB protein [Escherichia coli O157:H7 str. Sakai] BAB37977 [Escherichia coli O157:H7 str. Sakai]  ali  100  1MNTIDNTQVTMVNSASESTTGASSAVAASALSIDSSLLTDGKVDICKLMLEIQKLLGKMVTLLQDYQQKQLAQSYQIQQAVFESQNKAIEEKKAAATAALVGGIISSALGILGSFAAMNNAAKGAGEIAEKASSASSKAAGAASEVANKALVKATESVADVAEEASSAMQKAMATTTKAASRASGVADDVAKASDFAEDLADAAEKTSRINKLLNSVDKLTNTTAFVAVTSLAEGTKTLPTTISESVKSTHEVNEQRAKSLENFQQGNLELYKQDVRRTQDDITTRLRDITSAVRDLLEVQNRMGQSGRLAG 312
2 -40.900IDP95064 methyl-accepting chemotaxis protein, partial [Campylobacter jejuni] AGM39603 [Campylobacter jejuni]  ali follow..  8  4..........................................KINHSDLQKLEEENKNLTHKIE-------------KFQSENLELKNKITSLEQAALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDEL--NHIANSINASLRNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAARAGEHGRGFAVVA-DEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKIS-----IDSNAHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVS. 251
3 -40.100IDP01046 putative methyl-accepting chemotaxis protein STM3138 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  8  7...................................................................GLRHWNNNVVKIPPPAAESGANASDVVVDTPEPYERILCQ--KILMGISTIDIIRNAIIKSCEQLNIEKERINELNEQNDKA--RSSLKSLVEFITEIGTTSSDIGCRMGDLNTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVIS-KEVKNLSEDVKHSSKSVSTLTSVIKDNTARVSEVLDNQQPV-----IDNITTNINQIVESIGIVIDKSLSMKSVMQYISTVQ.... 237
4 -37.300IDP91343 methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6] VV2_0072 [Vibrio vulnificus CMCP6]  ali follow..  11  208..............................NPLMELVYNKKVDDISEIKLALKMRQSELNAVVG-------------RIQDSNQQLIDSARNSSSNSDKASHNLKGQTHETEQVAAAITEMHSTANEIAQNAQSASDATDQAHSAASEG--MITVQDTVKAIKLLAGQLDETSDVVSQLAQHGKTIGDVLIIIQGVAEQTNLLALNAAIEAARAGEQGRGFAVVA-DEVRKLAQRSHESTEEIQKVIGLIQSSTQKAVSSMSEGTHLAEQC-VSSADSSGQKLQILLDQVTDISDRNNQIATAVEEMARVT. 471
5 -36.200IDP01485 hemolysin secretion protein HylB VCA0220 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  234..........................AAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIE-------------EVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEG--KKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVA-DEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVE... 502
6 -35.000IDP04179 methyl-accepting chemotaxis protein [Vibrio cholerae O1 biovar eltor str. N16961] VCA0068 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  235............................AKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVE-------------SLVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQS--LRMFEESHRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVA-DEVRMLAARTQTSTQEIQAIIEELQNQSNTANSSMHSSLSLLEQNQAAKVSASLTEINHSISALGQINAQVATASEEQSQVTK... 501
7 -35.000IDP93886 methyl-accepting chemotaxis protein [Yersinia enterocolitica subsp. palearctica Y11] YP_006007026 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  18  1MNMTVKHQIQSSG---------DNTLSTEKNGGMGNNTDNIIADLTDIIFKMVGLMKQMRDLLNAYNQKQQILGWNIQVNAMSNKREAIDKTASAAIASGACSIVSGFISGTGAGASLK-----LGDIATHIGSAVGQLSAGSGKLAEGDMTRNAELFNMASGLQSSSAQTYNKNSSELADKVGEVRQNMKEFANTLTNLICQIATAAKF...................................................................................................... 196
8 -34.400IDP95280 methyl-accepting chemotaxis protein [Acinetobacter baumannii ATCC 17978] YP_001085820 [Acinetobacter baumannii ATCC 17978]  ali follow..  14  325..........................................DFTGAIADSINFAIDQLRDLVS-------------RIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGM--DTIREQIQETSKRIKRLGESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVA-DEVQRLAERSASATKQIETLVKTIQTDTNEAVISMEQTTTEVVRGAAKDAGIALDEIQKVSGDLAKLIASISDAAKLQSASAS... 577
9 -29.000IDP01957 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM1657 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  75..............................GNLSIHISEFGNNCAGRLIPGINSLSENISALVREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSA-------------SLIQTAASIDEMAASTKNNADNTRMASIQADCATQCARKGG----------------ELMVRVTENMRSITDCASQMTEIISLIDGIAFQTNILALNAAVEAARAGDHGKGFSVVAG-EVRNLAHRSAEAAKSIKALIDVTHDNVRQGAAIVQEAE-KNMQEIVGGSGQLNVLMSEISTTTREQEKGINQITLALSDLESAT. 324
10 -28.300IDP02252 gene: tsr2; putative methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1229 [Yersinia pestis CO92]  ali follow..  11  301..................IQQAMDAISSGSADLTQRLPIEGRDEVAQIARSFNQFADKLSLVMAQIRGTSESVRVAANEIAAGNQDLSGRTESAAA-------------SLQQTSAALEQISATVAQSASAARQANNAVFSASEDASRGG----------------DVITKVITTMESIEKASGKIGDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAG-EVRILAQRSAQAAKEIKALIESTVSSVASGSSQVRQAS-NAMTDIVSSVSDVTTIMSEITNAADEQMRGIHEINSAVAQLDTMV. 562
11 -28.200IDP02076 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM3216 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  231..............................GDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQAS-------------SVEETAASMEQITATVKNTADHTSEATKLSAGAASVVKNNG----------------EMMNQVTQKMRVINDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGFAVVAG-EVRQLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKAS-ALINGMVDNVEEMDVILREIGQASREQTDGISQINSAIGLIDAAT. 480
12 -27.700IDP01940 gene: trg; methyl-accepting chemotaxis protein III [Salmonella typhimurium LT2] STM1626 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  247..............................GDLTMADEPTGRSEIGRLSHHLQQMQHALQQTVGAVRQGAEEIYRGTSEITAGNTDLSSRTEQQAA-------------AIEQTAASMEQLTATVKQNADNAHHASKLAEDASGKASRGG----------------QMVSGVVQTMGNISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAS-EVRTLASRSAQAAKEIEGLIGASVSLIEQGSEEVIAAG-STMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVT. 496
13 -27.500IDP01089 gene: tsr; methyl-accepting chemotaxis protein I STM4533 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  235..............................GDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAA-------------SLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGG----------------KVVDNVVQTMRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAG-EVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESAG-ETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVT. 484
14 -27.400IDP01047 putative methyl-accepting chemotaxis protein STM3152 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  231..............................GDLSQPIEALGRNCVGRLVPLLRAMQDSLREAVSTIRAGSDNIWRGATEISTGNNDLSSRTEEQAA-------------ALEETAASMEQLTATVKMNAEHARQASQLADAASLTAGKGG----------------ELVSDVVETMNGISASSQQIAEITTVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAG-EVRNLASRSAGAAKEIEALIGESVRRVAQGAQLVQETG-ATMDAILRGVTEVTTIMKQIASASEEQSKGISQVGVAITQMDSVT. 480
15 -27.400IDP02460 gene: cheD; methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1675 [Yersinia pestis CO92]  ali follow..  13  235..............................GDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAA-------------SLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGG----------------KVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAG-EVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAG-ETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVT. 484
16 -27.200IDP02090 gene: tcp; methyl-accepting transmembrane citrate/phenol chemoreceptor [Salmonella typhimurium LT2] STM3577 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  9  234..............................GDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDLSSRTEQQAS-------------ALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGG----------------RVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAG-EVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAG-ETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVT. 483
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.