current user: public
If you have questions about the server, please let us know.

Query: IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .
# Score Template Links and tools%idFirst MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMKLast
1 -152.000IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali  100  1MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK 619
2 -145.000CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  100  1MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK 619
3 -13.500IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  20  103..................................................................................................................................................................VDDVVTEVELNRMWYLTSVATIGSI-------------------EGIQYLPNLYDVRLQFDKQCKDLSPFLKAPNGYSQLYRLNINNGNI-SDISPLTELSAPTLNDIDLGGNNISDLSLFPKLPNKFPNLEEISLERNNISDVSPLAKFASTKIKIFNLDENHITDLSSLTNNKMPNLQRLYVRYQTLDMEPV....................................................................................................................................................................................................................................................................... 276
4 -12.200IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  13  1...................................................................................................................................................................................................................MKKALKLFLATICMFIMIYPSTA-VNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEA----GNLVTLSLNNTNIQTLEPIKNQT--SLTYLTVGGDNVKDSLFVD-------LNGLVNLQSLS--------------------INGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDD--------FRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGK.................................................................................................................................................. 228
5 -11.700IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  14  27.............................................................................................................................................................................................................................SAEENISIKAAQDVVNIPDPALKSYLNGLLGQPSTSDITEAQMDTITDVTISNASLTDLTGLDYA----HNLTILHLTNTGVTDYSLVANIP--SLTNLNISGSNLTTNSIPDLNGLTNVTNLNLSSGKLDNSALTK----------------------NKLPNLTFLNLDNNPSITDFMPLKSLPNL----ASLFIQVNDFRGIDSFPKLTNLAAFGQNVGSAILINSTIKSYNEANQTIFVPFTLMTERS.................................................................................................................................................. 254
6 -11.500IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  18  65.........................................................................................................................................................................................................ADITEAQMATFRNI-----TLNSGIKDLTGIEYLKNITTLSINNINASYEPIQTLSSLEKSVLSNLTFLDLSRTNIDDFSKISNI----PNLNKLDISNNKITKISELNNLP--SLQELRVSDCQITNFKG---------IEKFPNLTAFY........................................................................................................................................................................................................................................................................... 214
7 -11.400IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  12  36...................................................................................................................................................................EATTDTTEPTTIDQPSRMDNSQTAPQKMTASSSEEAATTNSTEEENTPKNNLKSTSENSKT----YAELFPDVNLAKI-IAKNISGTEDINAEVSE--AELQTITNLVATNQNITSLTGIEHL----TALENINVNNNELTTIDSLFNIP--TLKSISANNNKITGNFSLVKT--------LPELHTLE---------------------------------------GNAITELDIENQPNLVTLSDELELKKLTLKNLSQLNGLGRIASSISIDMNLPEIISVDISGNYLDSDDIHLLPAVKNLDISSNELTRL............................................................................................................................................ 305
8 -11.400IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  15  2......................................................................................................................................................................................KQRKTSVLHVLLVVTAILGISLWVNASHGMKAQAESIAQPA----PINEIFTDPALADE-VKTELGKTSVTDEV---TQTDLNQITKLEADDKGINSIEGIQYL----TNLNMLGVSSNQITNITPLANLT--NLDSLYLGDNKISD------------VTPLSGLTQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQISDA......................................................................................................................................................................................................................................... 179
9 -10.900IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  11  3...................................................................................................................................................................KLVKIILALFLITTVFLPFSNVKAAPTDVVNIPDPVLNSGLKNIIGNPFLDEITEANMATITVADLSNMSGAPGYPVTGLIKDLTGLDKAVNMTKL--KNLPNLKKIVAVTTGLNNISALGEM----PALEEVELGGDYITDFTPLLEKE--NLTSFSYNSYAWSNPAYHQINNDE--FKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQFTNVIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNN.................................................................................................................................................................................................... 268
10 -10.800IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  10  44..................................................................................................................................................................INVIFPDPALANAIKIAA--GKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVLIGLELKDNQITDLTPLKNLTKITE--LELSGNPLKNVSAIAGL-----QSIKTLDLTSTQITDVTPLAGL----SNLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSD------------LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGP.................................................................................................................................................................................................... 284
11 -10.500IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  13  326.......................................................................................................................................................IDASNCTDLETLGDISGLSELEMIQ----LSGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNN----PKLQTLVLSDNENLTNITAITDLPQLKTLTLDGCGITSIGDNLPKLEKLDLKENQITSISEITDL----PRLSYLDVSVNNLTTIGDLKKLP--LLEWLNVSSNRLSD------------VSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISM--MPNLRKVASNNLITNIGTFDNLPKLQSLDVHSNSVIHDLPSLETFNAQTNLITNIGTMDPDLTYVNLSFNRILPNLETLIVSDNNSYLRSLGTMDGVPKLRILDLQN--YTGTEGNLSSLSDLTNLTELNLRNNVYIDDISGLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNKIENISALSDLE-NLNKLVVSKNK----IDISPVANMVNRGAI....... 778
12 -10.500IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  12  86..................................................................................................................................................................ITTIEGLQYLTNLSELELIDNQVTLNPLTNLTKITELRLSGNPLKDVSALAGLLKTMDLIYTDITDVTPLAGLSNLQV--LNLDINQITDITPLAGL-----SNLQFLSFGSTQVSDLTPLANL----SKLTTLNAMNSKVSDVSPLTGLS--NLTEVYLEENQISD------------VSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIAPDTISDNGTYTSPNLTWDL..................................................................................................................................................................................................................... 307
13 -10.400IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  14  49.............................................................................................................................................................................TFKAYLNGLLGQASTANITEAQMDSLTYITLANINVTDLTGIIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSDKIPNLSGLTNNTLPKVTSIDLSYNGITDIMPLKTM----PELKSLNIQFDGVHDYRGIEDFP--KLNTLLAYSQTIGG.................................................................................................................................................................................................................................................................................................. 223
14 -10.300IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  13  70..................................................................................................................................................................TSDTVTQTELNSLTGSFQAINK-GIKSIEGVEYLQNITELDVEKNQITDIAPVLTTLLINTNQITDISPVADLANLTT--FYCGNNPISDISAVQNL-----TKLSIFNCYTANVEDISPVKNL----VNLKTLSLGSNNIHDISDIEKLT--ALEYLSFSNNPVEN------------PEVIGNLTNLNTLWLYNAQIRNIDFTANLPKLKSVYLYNNQISNIVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQIITNREIPFQKNISIENKVMDNFGNIVTPNNI.................................................................................................................................................................... 343
15 -10.200IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  14  44..................................................................................................................................................................VNEIFTDPKLAQVVADWL--KLPAATSSVTQTQLNTIKALHFDSKGVQSLEGVLTQVFGYGNQVSDLGPLSNLTKLEV--IQMPRNQISDLTPIANL-----TALMSLDFEFNNLQTIEPIKNL----TNMLELNVSANPISDINAVKNMT--QLEFLTLRDCEVSD------------LSPVENLSNMLMFWAGRNNISDITPLKNMSKLLGLSLFGNQIKDVIKNLTSLEDFDIKANQVSDISSLATSTTLETLTLSFNQIID--------ISPLKNLTNLTRLELENQTRALDAVEIDNPLILP...................................................................................................................................................... 322
16 -10.000IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  15  44..................................................................................................................................................................IKQIFSDDAFAETIKDNL--KKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIVTKLFLNGNKLTDIKPLANLKNLGW--LFLDENKVKDLSSLKDL-----KKLKSLSLEHNGISDINGLVHL----PQLESLYLGNNKITDITVLSRLT--KLDTLSLEDNQISD------------IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP.............................................................................................................................................................................................................................. 256
17 -9.750IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  12  3........................................................................................................................................................................KKRYVWLKSILVAILVFGSGVWINTSNGTNAQAATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQDRLGIKSIDGV--EYLNNLTQINFSNNQLTDITPLKNL----TKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITD------------IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLISSNKVSDISVLAKLTNLESLIATNNQISDITP---------GILTNLDELSLNGNQLKIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE----LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINW------AGHNQISDLTPLANLTRITQ........... 409
18 -9.670IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  12  552.......................................................................................................................................................................................................................LKITDGKKEGITDFSGLEFMTNVEE--LTLQNVNMKNAEFISSL-----RNLKSVDLSYNQIEDIKPLHSL----EDLEKLNVSDNGIKNVPELFKMQ--KLKTLDLSNNKLDNAALDGIHQLENLDALISKVSKLNKLEMMSNKVRDISPLASLKNLQWLNLSDNKIQDILSSMLDLLSLKLAGNEIRDVRPVIQLAQWITVDIK----NQKIVLEDGQMNQEIQIPIYDLEGEIFEDIELKSTDGIVTDRGTVVWKTPGAKIYSFSLNGNYHGLSLLFSG.......................................................................................................................... 830
19 -9.280IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  18  96.........................................................................................................................................................................AMFNNVTDVSIMEFGAKLTEFPDITTIPHLKTLFFADPPGRLTRNLSLPNYQNYPEMITMSGNNLIGSIPDFTGMPALKQLYMITSDELPNFNNIPLLITLDLSSNQLTTIPDFQNI----PNLTFLDLNANLLTNTPDFQNLP--KLTDLNLRHNNL-----------TGTMVNYTNLPSLESLNLDYN.................................................................................................................................................................................................................................................................... 274
20 -9.250IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  14  12.........................................................................................................................................................................................................VSLTMVSNPLLTFAATN--DVIDNTTEITTDKETSSTQSFNDWFPDDNFASEVAA-TISEEQLATLTSLDCHNSSITDMTGIEKL----TGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTEL-----NKKITKLDVTPQTQLTTLDSFNKITELDVSQNK------LLNRLNCDTNNITKLDNQNIQLTFLDCSSNKLTEILTYFDCSVNPLTELDVS......................................................................................................................................... 302
21 -9.200IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  14  52..................................................................................................................................................................FSDVTPLVKMDHLDSLDL--SNNKITNVAPLIEMKNVKSLYLSGNQIEDVTALLDYLNLANNKITNVAPLSALKNVTYLTLA---------NQIEDIKPLYSLPLTDLVLTRNKVKDLSGIEQM----KQLEELWIGKNEIKDVTPLSKMT--QLKQLHLPNNELKD------------ITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANEIRDVVIELSKTAYINVQNQKVFLEETEVNKEVKVPIYEKDGK................................................................................................................................................................................................... 292
22 -9.050IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  16  84..........................................................................................................................................................................................................AIWSNNIGELPDLSEALPALENIEANGANITVFPDANYPNLNVDLSQNNFGFNIPKF--VGMEGLVSINMENAGLSGYIAEDIWMN-MPNLDSLILNENHLISIEDIFLSQ--QLGTHSFANQTATY.................................................................................................................................................................................................................................................................................................. 207
23 -9.040IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  16  36............................................................................................................................................................................................................ELDGNEPFIAETEKILSKNRQDITLADLETIQKI-------HVFGADSIPNKI----SDYKNLTALEANYGTITEV---PESVGSLKELVTLNVDENNLQEFMVIFQLP--KLEVLYISRGNI-------TEIPTEITTLASHLKVLD........................................................................................................................................................................................................................................................................... 161
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.