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Query: IDP91775 gene: vanXYE; VanXYE [Enterococcus faecalis] AAL27443 [Enterococcus faecalis], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKNYLRLINENNEIKDSERPSHLVQAPFAQTNILVDPMVAIQLEKLIKTTGLDSQIITIDGYRSKETQQALWDETIQEKGLEFAHKYVAKPGCSEHEIGLAVDLGLATKENDFIRPSFTDSPIVDKFLKHMTDFGFILRYQKGKESITNINYEPWHFRYVGTPHSSIMVQQNWVLEEYIEFIESIRGTAYEALast
1 -106.000IDP91775 gene: vanXYE; VanXYE [Enterococcus faecalis] AAL27443 [Enterococcus faecalis]  ali  100  1MKKNYLRLINENNEIKDSERPSHLVQAPFAQTNILVDPMVAIQLEKLIKTTGLDSQIITIDGYRSKETQQALWDETIQEKGLEFAHKYVAKPGCSEHEIGLAVDLGLATKENDFIRPSFTDSPIVDKFLKHMTDFGFILRYQKGKESITNINYEPWHFRYVGTPHSSIMVQQNWVLEEYIEFIESIRGTAYEA 193
2 -99.000IDP91778 gene: vanXYc; D,D-dipeptidase/D,D-carboxypeptidase VanXYc [Enterococcus gallinarum] AF132548_1 [Enterococcus gallinarum]  ali follow..  47  2...NTLQLINKNHPLKKNQEPPHLVLAPFSDHDVYLQPEVAKQWERLVRATGLEKDIRLVDGYRTEKEQRRLWEYSLKENGLAYTKQFVALPGCSEHQIGLAIDVGLKKQEDDLICPHFRDSAAADLFMQQMMNYGFILRYPEDKQEITGISYEPWHFRYVGLPHSQVITAQKWTLEEYHDYLAQTVR..... 187
3 -92.500IDP91774 gene: vanXYG; D,D-dipeptidase/D,D-carboxypeptidase [Enterococcus faecalis] AAQ16272 [Enterococcus faecalis]  ali follow..  42  12IYCGNLLLVNKNYPLRDNNVK-GLVPADIRFPNILMKRDVANVLQLIFEKISAGNSIVPVSGYRSLEEQTAIYDGSLKDNGEDFTRKYVALPNHSEHQTGLAIDLGLNKKDIDFIRPDFPYDGICDEFRRAAPDYGFTQRYARDKEEITGISHEPWHFRYVGYPHSKIMQENGFSLEEYTQFIKAYLEDN... 200
4 -84.500IDP02154 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA2526 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  30  59..ASVQAVVNKEYGLPEDYKPEDLVVPNVPFEKSYLRKEAAEALERLFDLANKEGQLNAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEHQTGLTMDVSSKSANNE-LELTFANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVG-DIAESIYKKKLTLEEYMNL........... 243
5 -82.900IDP02767 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA4750 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  29  72..DSNLVLVNKHRKLPDGYTPEDLTRPNVPFEKTLLRKDAADALENMFEAAKKEGELTAVSGYRSYKRQKSLHDTYVRRQGKAEADSVSAIPGTSEHQTGLAMDISSKSAKFQ-LEPIFGETAEGKWVAKHAHEFGFVIRYLEDKTETTEYSYEPWHLRYVGNPYATYIYKHHLTLEEAMEDKK......... 259
6 -78.600IDP92726 gene: ddcY; metallo D,D carboxypeptidase [Enterococcus faecium] ADD91671 [Enterococcus faecium]  ali follow..  29  39.DSWNLLLVNAKHKIPQGYTVELQKLSN----DQAVDKRIYPDLQLMLDAARAEGYPKIVSSFRTTEDQEKIMEDKIAQKAKEEAAKWVAAPGTSEHELGLAVDINAES-------SISTDKEVYEWLADNAYQYGFILRYPSNKVYITGVGYEPWHYRYVGKKAAKKITEAGITLEEYLGKTE......... 220
7 -78.500IDP91977 D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007810 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  32  70..YDEIILANKRYPLSKDYNPGENP-------------TAKAELLKLIAAMQAEGYSDQYSGFRSYETQAKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFDLIGTDG------DLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKE-AKEIAASGLSLEEYYGFEGG........ 234
8 -77.200IDP01682 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5104 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  29  55IYKGDLLLVNKDYPVKKDSIRSDIINVNHNSRNLRLSKDVVKKFLNVVDAAGKDGHFLMNSGYRDFKEQSKLYKEM--------GSDYALPAGYSEHNLGLSLDVGS-------TQKKMEKAPEGKWIEENVWKHGFVLRYPKNKSHITGIQYEPWHIRYVGLPHSAIMQKKKITLEEYLDFLKEKKEITTD. 243
9 -76.300IDP91044 gene: vanY; vanY [Enterococcus faecalis] EFA0002 [Enterococcus faecalis]  ali follow..  29  63VYQGNLLLINSKYPVRQESVKSDIVNLSLLDSNIYMSKEIAQKFSEMVNDAVKGGHFIINSGYRDFDEQSVLYQEM--------GAEYALPAGYSEHNSGLSLDVGSSL-------TKMERAPEGKWIEENAWKYGFILRYPEDKTELTGIQYEPWHIRYVGLPHSAIMKEKNFVLEEYMDYLKEEKTISVS. 251
10 -75.400IDP91871 gene: vanYB; D,D-carboxypeptidase [Enterococcus faecalis] AAB05624 [Enterococcus faecalis]  ali follow..  30  87.QEWSLILVNRQNPIPAQYDVELEQLSN----GERIDIRISPYLQDLFDAARADGYPIVASGYRTTEKQQEIMDEKVAEQAKAEAETWVAVPGTSEHQLGLAVDINADG-------IHSTGNEVYRWLDENSYRFGFIRRYPPDKTEITGVSNEPWHYRYVGIEAATKIYHQGLCLEEYLNTEK......... 268
11 -62.800IDP00223 putative carboxypeptidase YPO3054 [Yersinia pestis CO92]  ali follow..  17  3...............DNTLTPQMLTGLSTDHGAHRLQPQAAEAFQAMQQAAKVAGDLQPASTFRDFGRQLAIWNGKFRAARCEAILRWSALPGTSRHHWGSDLDIYDPSREPWEYDAGGYFYPLTQWLSAHMAEFGFYRPFATDN---GGVAVEPWHLSYRPLEQAEHLLTPKILLAAWQS............ 201
12 -38.100IDP91776 gene: vanXD; D,D-dipeptidase VanXD [Enterococcus faecium] ACM47288 [Enterococcus faecium]  ali follow..  15  15......IRWDAKYATWDNFTGKPVD--GYMVNRVMGTKELGVALRKAQKMAEKLGGLLLWDGYRPQCAVNCFLNWASQPEDNLTKKRYYPNASQSSHSRGSAVDLTIFRLDTGMLVPDVRSHHAASGLSEEESKNRQCLRYIMESSGFEAYRYEWWHYVLADEPYPDTYFDFCIA.................. 202
13 -23.800IDP91773 gene: vanXB; D,D-dipeptidase [Enterococcus faecalis] AAB05628 [Enterococcus faecalis]  ali follow..  15  15......VRWDAKYATWDNFTGKPVD--GYEVNRIIGTKAVALALREAQIHAARLGGLLLWDGYRPKSAVDCFLRWAAQPEDNLTKEKYYPNASQSSHSRGSTIDLTLYHLDTGEMGSNFDFMDERSHIGNAEAQNRRCLRKIMESSGFQSYRFEWWHYKLIDEPYPDTYFNFAVS.................. 202
14 -20.800IDP91596 gene: vanXst; D-ala-D-ala dipeptidase [Streptomyces toyocaensis] AAD02118 [Streptomyces toyocaensis]  ali follow..  14  21......LRWDAKYATWDNFTGKPVD--GYLVNRIVGTKALCAALERARDEAASLGGLLLWDGYRPQRAVDCFLRWSQQPEDGRTKSRHYPNAARSGHSRGSTVDLTLYDLATNEMGGDHDLMDPVSHLAPVEARNRQHLRSVMESCGFKAYEYEWWHYTLADEPYPDTYFDFPIM.................. 208
15 -15.200IDP05627 hypothetical protein CD1406 [Clostridium difficile 630] CD1406 [Peptoclostridium difficile 630]  ali follow..  11  99.......MIGKSMPTDEPISFDSLSYLKLTYGEMIVNSELAPEVVDIFKELYEKKPIEKIKLIDDYDAVDEKSMSD-NNTSSFCYRTIAGTNVVSNHGKGRAIDINPLQNPQVSGNDVTPKVSTV--CYNAFVSRGWS-----------------WHFE.................................. 267
16 -14.500IDP00233 putative phage-related protein YPO3676 [Yersinia pestis CO92]  ali follow..  17  21...................................VHPDLVLIVRRALTLSHID--FRVIEGIRTPERQRQMVLN-------------HSKTMNSRHLTGHAVDLAPMVNNRIPWDDWHAFVHVAKAMKQAAKAMELPLQWGGDWKNFRDGP----HFEL................................. 127
17 -11.900IDP90420 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_465 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  15  98....................................PFSIHPLLVTIAQYIHHHFPITIEEGYCCPMHYKFL-------LTSDTSIS-------EQHCKGLAAIVSTQQ.................................................................................... 156
18 -10.000IDP91979 LysM domain-containing protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100000080 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  20  297............................................................................................DSGDHGKGLAIDFMVPERSE--------GDKIAEYAIQNMASRGYIINPMPDRGSVTENHYDHVHVSMNG............................... 380
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.