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Query: IDP91894 peptidase, M50 family protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007895 [Streptococcus pneumoniae str. Canada MDR_19A], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKIGTYLVYVLAVVFIMLAFACGTIAFAELGYSAVLAFTFGYAFALLSMYLIFILHELGHAFCGYLTGYRLVAFGLGHFILTKKSGRFHLSRTAILKNVGAQYIGLKEDESDQRIILMLSGGLMVHLGLILLAILFGFLTRSWYFAGTWIFLNLSFFLNNILPVDITDGAKIWELLQHPENTKYAYLVLRHSAQTLLAPQEYDLKDFVQAVPEDARGSFADGVLGMQGEVSILEGKEEVAKQQFQALLERTTTPMMQTVAQLSLLHIALLEGDFEQAEQYASIRQVKSFLSLKLSNLQVIQAWYQFKVRKDVVQTHKAMKIARQKMDSSRMLRDEKRYYENLLAELEKEMLEGTEDGTRNFLast
1 -106.000IDP91894 peptidase, M50 family protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007895 [Streptococcus pneumoniae str. Canada MDR_19A]  ali  100  1MKKIGTYLVYVLAVVFIMLAFACGTIAFAELGYSAVLAFTFGYAFALLSMYLIFILHELGHAFCGYLTGYRLVAFGLGHFILTKKSGRFHLSRTAILKNVGAQYIGLKEDESDQRIILMLSGGLMVHLGLILLAILFGFLTRSWYFAGTWIFLNLSFFLNNILPVDITDGAKIWELLQHPENTKYAYLVLRHSAQTLLAPQEYDLKDFVQAVPEDARGSFADGVLGMQGEVSILEGKEEVAKQQFQALLERTTTPMMQTVAQLSLLHIALLEGDFEQAEQYASIRQVKSFLSLKLSNLQVIQAWYQFKVRKDVVQTHKAMKIARQKMDSSRMLRDEKRYYENLLAELEKEMLEGTEDGTRNF 362
2 -20.200IDP00196 putative membrane protein YPO1051 [Yersinia pestis CO92]  ali follow..  12  1...................................MMSILWSLAAFIVALGILITVHEFGHFWVARRCGVRVERFSIGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEA-LQRAAIVSAGPIANFLFAIVAYWLVFIIGVPSVRPVIGDISPQSIAAQA----ISSGMELKSV.......................................................................................................................................................................................... 154
3 -12.000IDP90994 hypothetical protein y1355 [Yersinia pestis KIM 10] y1355 [Yersinia pestis KIM10+]  ali follow..  11  24.....................................................................................................................................................ALAVGVVLGIGALV------GWRYWQGNQNTAMTEASSAYQKVSTALSTNGNVSADSIALAEKFVQSNKNYGVLVGLELAHDFVEQNAFDKAAQQLSQALGQTKDENLLSLINLRLARVQLQLKKPDEALKTLDAVQGDGWT-----AMAQDVRGDALLSKGDTAGARAAYSKAIESNAS----QALQALLRMKLNNL............... 209
4 -10.700IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]  ali follow..  10  1......................................................................................................................................................................................MRKLLTVIGITFLILAGCSNGDFEKEIDA------------------KTALTNKEYKNALSSFERALDEKKDDSGAIVLVEQTKIMLKEEKKIEESIQSFEKTALLAILEQKKKYSEQLTKSEELINKKNYAEAKETLNKLVLETKDNKNLEEYNKKAVGLVTKIGEEEKTAKSKATAK. 186
5 -10.400IDP91180 gene: lcrH_1; low calcium response protein H [Chlamydia trachomatis D/UW-3/CX] CT576 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  9  37...........................................................................................................................................................................DLEQKYPVPTEEETKQVLMDILQGLSNGLTLQQLSDVLLEEIYTVA------------YTFYSQGKYQEAIGLFQILTASKPQCYK---YILGLSSCYHQLKMYDEAAFGFF----LAFDAQPENPIPPYYIADSLMKLNQPEESQDFLDITIDMCKNKPEYKVLKDRCSIMKQSLDAVLKKEKSAKGSE. 210
6 -10.200IDP93896 secretion system chaperone SscA [Yersinia enterocolitica subsp. palearctica Y11] YP_006007024 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  15  19.................................................................................................................................................................................................................LRMLAKMDPQDLALVYDYSV-QLCQGGEYDGAKRLLNLLVRFDH---WNFSYWLTLGLCYQQTADFHQAIYCFS----RAGQIQVDDPRSSCSAGECYLACGNRIYAEKAFRAALNWCHARPEWIHIQQQAERGLAALLLEV........... 152
7 -10.200IDP00560 gene: hemY; putative protoheme IX biogenesis protein YPO3852 [Yersinia pestis CO92]  ali follow..  9  1...................................MLRVLLLFLVLTVGIVLGPMLGHQGYVL-----------IQTDNYNVTTS---------------------------------------VTGLAIMLVLLLVAFFIVEWVLRRIFRT-QMKAALIKLAEGDFLQVEKLLTRNADHAEQPMVNYLLAAEAAQQRGDEFRT--NQYLERAAEVADGDQLPVNITRVRIQLAQGHIHAARHGVDRLLDQAP---RHPEVLRLAEQAYLRSGAYRSLLDILPAMSKTQIHTPEEVAALEQQAYIGIMNQEGSEGLKRWWKDQSRKVRNEIPLQ-ECDDHDVAQKIILDSLKHQYDER.... 297
8 -9.270IDP93914 type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007694 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  16  32.................................................................................................................................................................................................................YKDIYGIPQSTMDGLYAYAY-EFYEQGKLKEAETFFRFLSIYDFYNTD---YVMGLAAVYQLTKRYEKAVELYS----LAFVLAKDDYRPLFHAGQCNLMLKKSSAALHCFESTFNGSDDLEL----KQKSSVYLTALKKNLTESEPAE.... 168
9 -9.190IDP02151 hypothetical protein GBAA3159 [Bacillus anthracis str. `Ames Ancestor`] GBAA3159 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  42  130....................................................STGVHEFGHAI-----GIG................................................................................................................................................................................................................................................................................................... 143
10 -9.010IDP91750 SPG2_STRSG [Streptococcus sp. `group G`]  ali follow..  12  2............................................................................................................EKEKKVKYFLRKSAG-LASVSAAFLVGSTVFAVDSP----------------IEDTPIIRNGGELTNLLGNSETTLALRNEESATADLTAAAVADTVAAAAAENAGAAAWEAAAAADALAKAKADALKEFNKVSDYYKNLINNAKTVEGVKDLQAQVV---------ESAKKARISEATDGLSDFLKSQTPAEDTVKSIELAEAKVLANRELDKYKNLINNAKTVEGVKDLQAQVVESAKKARISEATDGLSDF 238
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.