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Query: IDP91953 extracellular solute-binding lipoprotein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002215 [Streptococcus pneumoniae str. Canada MDR_19A], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKFRKLACTVLASAAVLGLAACGNSGGSKDAGKSGGDGAKTEITWWAFPVFTQEKTGDGVGTYEKSIIEAFEKANPDVKVKLETIDFKSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLAELNDLFTDDFVKDVNNENIVQASKAGDKAYMYPISSAPFYMAMNKKMLEDAGVANLVKEGWTTDDFEKVLKALKDKGYTPGSLFSSGQGGDQGTRAFISNLYSGSVTDEKVSKYTTDDPKFVKGLEKATGWIKDNLLNNGSQFDGGADIQNFANGQTSYTILWAPAQNGIQAKLLEASKVEVVEVPFPSDEGKPALEYLVNGFAVFNNKDDKKVAASKKFIQFIADDKEWGPKDVVRTGAFPVRTSFGKLYDDKRMETISSWTQYYSPYYNTIDGFAEMRTLWFPMLQSVSNGDEKPADALKAFTEKANETIKKAMKQLast
1 -119.000IDP91953 extracellular solute-binding lipoprotein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002215 [Streptococcus pneumoniae str. Canada MDR_19A]  ali  100  1MKFRKLACTVLASAAVLGLAACGNSGGSKDAGKSGGDGAKTEITWWAFPVFTQEKTGDGVGTYEKSIIEAFEKANPDVKVKLETIDFKSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLAELNDLFTDDFVKDVNNENIVQASKAGDKAYMYPISSAPFYMAMNKKMLEDAGVANLVKEGWTTDDFEKVLKALKDKGYTPGSLFSSGQGGDQGTRAFISNLYSGSVTDEKVSKYTTDDPKFVKGLEKATGWIKDNLLNNGSQFDGGADIQNFANGQTSYTILWAPAQNGIQAKLLEASKVEVVEVPFPSDEGKPALEYLVNGFAVFNNKDDKKVAASKKFIQFIADDKEWGPKDVVRTGAFPVRTSFGKLYDDKRMETISSWTQYYSPYYNTIDGFAEMRTLWFPMLQSVSNGDEKPADALKAFTEKANETIKKAMKQ 442
2 -90.400IDP05444 hypothetical protein lmo0768 [Listeria monocytogenes EGD-e] lmo0768 [Listeria monocytogenes EGD-e]  ali follow..  19  1..MKKVLLAILSMVLLLSLAACGGSSDS-----SKDKNGKEEIVMWGS--------SGDQIKQLEKQIDSYNKSQDKYKVKY--VMQENVEEKLLTGIAGGELPDIIMWDRYQTALYAPKGVLEPLDKLVKEDLKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGVK----PPTTWDELATAAQKTTKWDGNKMTQAGMSL-QDVGLFNLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKMQNDLKVYQR---GFDDGSDAFAAGKEAMTYNGPWALADYNKV----EDLDYGVVEPPKGPNGDK-GAIMGGFGLVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKISGWLPANKIAAEDEKDPNYSVFVNTMKYAKI-RPTVAGYADVEGAMKPQFEKFMNGNISAEKALSQAEKEGNQILKEERDK 417
3 -89.400IDP95187 gene: lmo0181; lmo0181 [Listeria monocytogenes EGD-e] CAC98396 [Listeria monocytogenes EGD-e]  ali follow..  24  1MK-KGLLLLMVVVLSVFGLSACGGGSSS---------GDKTEITYYQF-------SAPADGKALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAEKGVLADLTSYIEKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVE-YPTADWTWKDEEAAAKKLTDAKNKVWGT---SQPVTMNEFYKVAAQNGGSIFNEDLTETTINSPENVEALTHLTNEVTDSVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDA-----PFKWDVQVEAGNTQK---ATHFFANGIGVSKDSDKKEAAFKFASFMSANEEAAKIRIDNNWELPATENKEDATPPDNREAVFESLQYMVL-PPVVKDWNKISDYTNSEFEKVLNGDSTPEKALKNSEDNINKTMGFK... 418
4 -88.500IDP05525 putative sugar transporter, substrate-binding lipoprotein [Clostridium difficile 630] CD2550 [Peptoclostridium difficile 630]  ali follow..  18  8MLKKLCSLAMVAIMTTTLITGCSSGNGKD----SKKDGEKEKLVLWMPP------VENNMKEVWDPILDKFEEKN-NCEVDLQIIPWDNYSEKFATAISAGEGPDVGYMYAEMYPQFIESGAVEDLTNYATKE---DKEQSIYIKTSEMMGGMYGMPFQANPGVLYYNKDILEKLGEK----PPKTWEDFKRICKKATQDTDGDGKIDQWGFGNLNWNWYPYLWQAGGDIFNDDLKSVKFNDKSGLEAAKFLKELQAYVPEDSLSKDSNEMIESVFGPGKAAFTIMLSSAATSVFDE--SFPDLNWGFVTGLEDKKA---ATFGAVDHLSLMSSAKNKELAYKLIQHMLS-VESMTEFHKAIPRAPITKGEPYQGDERFKEMVENDKNVYRP-LVVGPHGVEIYEYLWKELQTMISGDKTPKQALDDAAKYSNDLLAQ.... 430
5 -88.500IDP06508 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN10305 [Enterococcus faecium DO]  ali follow..  19  1MKGKKWLIGSLLVAATGILGACGGGSSAESDS-----DKEVTLTFWNG-------FTASDGEILQEIVNEFNKTNKNIKIEMDIMTWANLNEKLPTAISSKKAPDFIALNYPDFAQYVENGAVQPLDDFWEYDVDKSDFKETAIELGEVEGKQYFVPMQVQGMYMYWNNDLFKQAGL-DTEQPPTTWEELTEMAPKLTDSSKNVSGFVF--NKDGTAPLYNWMLANGGKLVNDDYTKSEFASPENLKTLKAIQKMIHVDKTGP-ESISGAEMDNLMNAGQLAIEINGPWLNNGLKAN-----EIDYNVTTLPQGSDSDKKTAILDGVGYAISTDNNKKEAVYEFLKYWNT-TEIGKKWSIENGFPAYLDSVAKDENDPIVSELSKQMDYAEPYLPGFTQISAINNDIINPLIEKLLAGEDPETLMNDADDAINQLLQK.... 423
6 -86.100IDP05433 hypothetical protein lmo1730 [Listeria monocytogenes EGD-e] lmo1730 [Listeria monocytogenes EGD-e]  ali follow..  16  1MKKKMFVVLALVLSLSLVLMACGGSKDD------ANSGDSKVLNVWAM---------GDEAKSLKELAQKFTK-DTGIEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKKVGYNEAPK---TWDELSDAALKLSKRGKDMYGFAI--DPNEQTTGFIFGRQNGSPLFDKD-GTPVFNKKPFVDTVTYLDSFIKNGSAPD-TDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDTAPD-IDGKWATAVLPKKENNESS---LGGANLSIFKYSDKKDDALKFMDYMSQ-PDVQLSWLKDTNSMPARMDAWEDDNDPYYKVFGEQMKTAEP-MPLIPQFEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVETLLKK.... 414
7 -85.200IDP05674 hypothetical protein lmo0859 [Listeria monocytogenes EGD-e] lmo0859 [Listeria monocytogenes EGD-e]  ali follow..  19  1MKIRKIAIAALSVVVASLLTACGGGNSKSD------DNGKTKVTFWAA-------PNPTQVKYWDEMAKAYEKENPDVTIEVSQMKEPSSEATIQSAIASKTAPTMSEINRSFAAQLADSKAIVPLNDVKGLDVKERNMSETMDSWKFSDGNQYVLPVYSNPILFAWRLDTLKELGYDAPPK---TYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAFFPLYDAASKGNAFVED-GKLVADDKAGTELLTFMSELQKNKLLLA------SKATDPFETGTSIMADNGPWTFPNWDEKFPENENYAITAPLVPDNEENVATYADSKGVVMYAQATDKEKEAAMDFLKFVYNDDKNDLKFLETTNLIPARDDATENEENPELEVYAANVPYSIP-AMDDAKYNDIQQIIEEAWNPIVRGEKKPTKAWSDMKKAEDGVLQE.... 439
8 -82.600IDP05761 hypothetical protein lmo2125 [Listeria monocytogenes EGD-e] lmo2125 [Listeria monocytogenes EGD-e]  ali follow..  19  1MKRKKVGIVSAVLVMALSLAACGGGKDTSKSG----SSDEKTLTVSV---------DAGYKDYVNKIKGDFEK-DNDVKVKVVEKDMFETLEALPLDGPAGTAPDVMMSAFDRIGSLGQQGHLAEVKLGNKDD-----YDEKDQKQVTIDDKIYGAPAIIETLVLYYNKDLLDKA--------PATFKDLETLSKDSRFAFTSEKGTGFLAKWTDFYFSYGLLAGYGGYVFGDEGKDIGLNNKGSVEGITYATKWFQDVWPKGDNKSADDFIQDQFVKGKAAAILGGPWSAANYKEA-----KINYGVAKIPTLNNGKEYSPFAGGKGWVVSNYSKNKDVAQKWLDYVTN-QKNQETLYDMTNEVPANLKARDTANDELTNAVIEQYKNAQP-MPNIPEMSEVWTGAENLMFDAASGSKTPQQSADDAVKVIEDNVTQKYTK 419
9 -82.200IDP92716 sugar ABC transporter substrate-binding protein [Streptococcus pneumoniae D39] YP_817037 [Streptococcus pneumoniae D39]  ali follow..  18  1MR-KGTMLSVVAGLSLAILAGCSGGTNSKQAS------SSNDIKVWVQ-----FSDETNEGKAWQKVVDNFNQSGSKYKVVTEYIPRGGYEDKVNAAITTNSLPDVITLDGPNTAAYAKSKVITPLDDYLKDN-NMDDVLDSIKQQGTYNGKFYAFGFSESNVGVYYNKKMFKEAGIAESLEKPWTWDEFNTIAKKLKDHYNKPTIDFRINSNDEPYAYMPLIWSNNGSVVNEDGTKAEFNSKESVEAVQFIQNLVKEGYTTV------SPVEKGFETGEYPMLLSGSWTIADMNTNYK---DIDFGILPYPVSSKTKKLVSPSGSWQLAVTTKSDKKEAASEFVKFATN-TESSEIISLGNSVLPIRKSTIENISEPMRFLMEQNSKTAHA-RPVVVAYPQVSRAFQQAMQDISYYEENPQKVLDTRTKEMQTAIDQSLK. 436
10 -81.500IDP02726 maltosaccharide ABC transporter, maltosaccharide-binding protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA4229 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  19  1MK-KALSLLTVSALSIGMLSACGPKDSGKKE--ESKAKKDYDLLVWE---------DDKKGVGLEPAVKSFEEKY-KVKVKVVEMQMTDQVKKLRLDGPAGTGPDVVTLPHDQIGNAVTEGLLSEVKA---DDAVKSKFTDSSIEAQTYNGKLYGLPKAIETPVFIYNKKLMPKA--------PETMDELFNFSKEFTKDGKYGFLA----LGDNFYFANAFMAGMGGYVFGEKDGDVGLNNSGAVQGAEYLQKWYKEKLFPKGGESGGPAADGLFNEGKAASIMNGPWAFQAMEKN-----GIDYGVAPMPKLPNGQPLKTFVGVKGWHVTSFSKQNDLATKFTEWVTN-EENAKIRFEKTKEIPPVKAVMEDPDNEAAKAVATQSENGIP-MPNIPEMQEVWKPAGDALQLVVTDKEAPKAALDSAVKQIKGNIEANHSK 417
11 -80.600IDP05708 hypothetical protein lmo2839 [Listeria monocytogenes EGD-e] lmo2839 [Listeria monocytogenes EGD-e]  ali follow..  18  1MKKKSLVLLVVVLVLSAVLAACGGKESG---------SKEVTIEFMHS------SVEKERLDVINKLIADFEKENPTIKIKQIPVEEDAFNTKVVTLARSGKLPAVMEVSQDFA-KVMDKDELIDQDAVKEDSVGEDKYYEGATNLVRSEKSYIAAPLSGWVQGIWYNKKALADAGFE----EPKNWADIEKVAKKFTNKADKKYGIAIPTAESSEQAFSQFALSNKANVLDAK-GNVTIDTPEMKEALQYYKDLSAYTMPGS---NDVTEIKDAFMNGTVPMAMYSTYILPSVYEEGDPK---NIGFAIPEEKEKAVYGT--VSGLTISAGLDDEQKKATKKFVEYLSQPENMATVLMSPGGAQPVNKEVVEQKENEVIKSFGDLPNEIAASFNDIQVFGTSSGIIAQMVNNVTVGGGDVSADLKAAQKKAEEG....... 429
12 -80.200IDP06544 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN09718 [Enterococcus faecium DO]  ali follow..  16  1..MKKIIVTTCLLATGFLLTACGESQSS-------NESQQTTIQFMHS------SVEQERLSVINELVADFEKENPDIKIKQVPVEESAFNTKIVTLARSGKLPEVMEVSQDFAKVMDKDELIDQTAVQVIEEAGEDNYYDGAKNLVRSGKSYIAAPISGWVQGIWYDKEKLSEAGFS----EPENWDDILKIAQHFTDKENKQYGIAMPTAEGSEQAFSQFALSNGANVLDDE-GEVTIDTEKMREALSFYQNLSQYTMPGSN---DVTEIKDAFMNGTAPMAIYSTYILPSVYEAGNSEN----IGFAIPTQKDQAVYGT-VSGLTISSGLDEKQKEAAEAFTAFLSQPKNMEKVLMSPGGAQPVNKQVVELKENEVIKSFGELPSEIASAFKNFTKMGDISGVIGKAVNQVTVGNEDVDQALADAQKNTK......... 427
13 -79.500IDP91126 extracellular solute-binding protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] SAOUHSC_00176 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  18  1MS-KILKCITLAVVMLLIVTACGPNRSKEDIDKALNKDKPNQLTMWVD--------GDKQMAFYKKITDQYTK-KTGIKVKLVNIGQNDQLENISLDAPAGKGPDIFFLAHDNTGSAYLQGLAAEIKLSKDE---LKGFNKQALKAMNYDNKQLALPAIVETTALFYNKKLVKNA--------PQTLEEVEANAAKLTDSKKKQYGMLF--DAKNFYFNYPFLFGNDDYIFKKNGSQLGLNSKHVVKNAERLQKWYDKGYLPKAA--THDVMIGLFKEGKVGQFVTGPWNINEYQETF----GKDLGVTTLPTDGGKPMKP-FLGVRGWYLSEYSKHKYWAKDLMLYITS-KDTLQKYTDEMSEITGRVDVKS--SNPNLKVFEKQARHAEP-MPNIPEMRQVWEPMGNASIFISNGK-NPKQALDEATNDITQNIKILHPS 416
14 -79.100IDP02207 putative sugar binding protein [Yersinia pestis CO92] YPO0612 [Yersinia pestis CO92]  ali follow..  12  1..........MKILYYIAIAIASLPLMA-----------AERLEIMVP-------SGSYVSFMRNTVTPEFNKLYPEVNLVVS------NDEQLDTRMAAGDNPNVYIGVFGYPAKLAKLGKLAYLDKFPGFAELNERIDPHFLR--ENFGRTYYIPWNATTQMMIYNKELFAEAGL-DPERPPATWDEFLLAAEKISALPPRSDGSKVYGTVNLLAPMYYNVNQGQYQLLNRYGTDIVFDRPD-ANMAQFMRTMQQAQRFAP------LTMEKSFFSRNIGMWLQFGFGWKATLSSAAEVVGQDVAIAPIPVQTKGDIHYSVLDGRAIMIKDEARKEQLSWALLNLLMR-DDINLQANIALGQLPTLKALQDAFQSAEAQPFVQQLQHAILSEPFANAMEVANIILANYSKVVLKGEISPEQAVATSAQAARQLLNEH... 414
15 -77.500IDP02597 putative sugar binding protein [Yersinia pestis CO92] YPO3472 [Yersinia pestis CO92]  ali follow..  17  1MK-TQMIMSKVKIKSLLLLTYLAMGIPS--------LHAAETLQVWIR-------ASNDSKNIYKKEADTFEK-KTGIKIEYFNAT-TDFEQRLARAAAGNALPDLIFNDAVAIGQFVQLGIVEPIEPKNIIG-GENIFDTAWKSTQYIDGKYYGVPTSAQTFALFVRKDWREKLGL----EQPKNWQDISTLAKAFTFNDPDGNG-GSTTRGYASWFISSYLWQAGGDFIRPAGEIASLEEPAATETLSFMRGMVCDKTVQPGINATTADAIPSFRSGQSGMFFSGPYHIALFDKDPGT---EAFEVIPPPTGPKGQA--TLAEGTTVFMMKSSQKKAAAQKFIEFMISPEGQQIGMGMGTKNMPVVRLSINKYDDPRWAIFADLYAEQGRYIPQVPNWTPIRQVTAEGFNRILANDSDIAAELKAVNQKVNDELAKQN.. 433
16 -77.500IDP06546 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN09092 [Enterococcus faecium DO]  ali follow..  18  1MNIRKIAGVVCLAAASGFLTGCGSASST--------ADKEEKVTVWAW-------DETFNIKAVNEAKKVYENEETEIEVVT--MSQDDIVQKLNTALASGNLPNIVLIEDYRIQGYLTSDAFANLSAIVKE----DHFAPYKFAVNKVGDKIYGVPFDSGVTANFYRTDLMAEAGYTEEDMENLKWDEYIQVARDVKEKTGKKIAEVN---PSDLGRVRMIMQQAGEWYTSEDGETVTQDNASLKYGLELFATLLKEDLVEQTSDWN--AGVTAIQSGAVASSPTGAWYSSTIQGAENQSGKWKIAPIPALPENLQKAQASNLGGAGWYVIKGVAGEDSAKDFLEAFASNEELMGTLAKEIGLVSTMLSANEQEGQKIFDDFSTWTSEI-PEVNYGHETYAIEAVVAEALHRIINGE-ETDKVLADTQKQVEAQLAN.... 428
17 -76.800IDP04377 putative maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein [Clostridium perfringens ATCC 13124] CPF_2652 [Clostridium perfringens ATCC 13124]  ali follow..  17  1MGKRTATVMAATMLFAGSLVGCGGKSDSGSA-----DGSGKELTVWS-------HLTTPEVEELNKMASKWGEENG---VKVKVVEDKSEMQAYIQAANSSKGPDIMFLAHDNLGTFQKAGLLAEVPEGIIND--SDYASHQVLDAVTIDGKRYAVPIAQETSALFYNKDKVKEV--------PKTMEDLVKVAEEGAG----------KYDINNFYATYGFIAADGGYVYKDNNTDIGLGTPGAIKGYQFVQDLVQKDKLMP-ADITGDIAKGDFLSKNTGFYISGPWDVSAFKDG-----GVNFGVAPMPTLFGKQVPT-FLGVQTAFVSEKSQNKDLAWKLVKYLSENS--GDVLLNKGNRIPVLNKYLDSANNEYMSAFAEQAKFATP-MPNIPEIQAMWGPAGANLQLLTSGQVTPEKCAEMTVEQIKQGIAQQK.. 408
18 -76.700IDP04242 sugar ABC transporter, sugar-binding protein [Clostridium perfringens ATCC 13124] CPF_1113 [Clostridium perfringens ATCC 13124]  ali follow..  15  1MRKKILSAILCMMIGATAMVGCGDKTDSTQAK----DGGKVKLRMTNW----------NNEDTMKDMLKYLSEKLPNVEIEYQFIDNSNYNTIVDTQLSAEEGPDIICESPASALKHAKLGYLENVNDLA------KKYSDSGTNVYKYDNNVYALPGISWFEGIYYNEKLFEENNIQIPK----TFDEYIEVCKKFQSLGIKPLAAGLKSWEPLLKNSMAFVTAEGKNFGQEYREGKVKLDGTWNMYLDKWSEMIKDGIYTKDTGIDHDQALEEFATGKAAMYCSGPWDLEAIMSKNPD---LKLNMMPFYGTKPSDGWLIGGPGCGFAVNSKSKNKDAAMEVLKAIST-EEGQKALWENNQGGSSYLTGTSFTLPEAFKGAEKAINAGHIYCPWNEWGGSAHVDYGKQMQNYLLGNQDLKTTLSNVDSAASELINK.... 419
19 -76.300IDP06507 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN11122 [Enterococcus faecium DO]  ali follow..  14  1MKKNSIVMMGVALVSGLVLAGCGNGSAS--------NSDKVELSINYY-----------NGAISKKAMDNAKKEFSDYKLSFKQIPADDFDTKLKASLNSKSAPDITAINSNISDYLPYADKFVNLLDYDSET-LAADFVEWKWDSCFTNDKQIAMPIDIGPTALFYNVDAFAKAGLPTNDQELKDEESLMAAAKQMKEKADMPFF------QSSLSLLQSKNRTMTEHIYDEN-GKLTYANGQLKEIWDYAVKAEKSGYTLGTKGNSA-DGANSVQKGMFGGMIEASWGINDLAENGVSPK--QWMIAKSPFTASN------YGGSYLAVIKTSSHPKEAAEVVKYLTN-EDSQRANYEELALFPSNTKVYDDSDEEFNHYFIDAANEL-EYVPSDPRESAAFKCFEDQIILVAEQGKDPEKAWNDAVKKVEEMSK..... 417
20 -75.700IDP01500 gene: malE; maltose ABC transporter periplasmic protein VCA0945 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  9.EKDMNMKNALSTVALSTLVALGSFGAH-------AAIEEGQLTIWI-----------NGDKGYNGLAEVGKKFEADTGIKVTVAHPDALQDKFPQTAATGDGPDIVFWAHDRFGGYAEAGLLVEIKPSAKI---QEGIVDFAWDAVKYNGKIIGYPIAVESLSLIYNKDLVPNP--------PKSWEEVAELDAKLKKEGKSAIMW----NLKEPYFTWPLMAADGGYAFKYDVKDAGINNKGVKDAMNFVKGLVDKGVISPDM--DYSVSESAFNQGNTAMTINGPWSWGNIEKS-----GINYGVTTLPKFNGQASKP-FVGVLTAGISTASPNKDLAVEFIENYLL-TNDGLRMVNNDKPLGAVALNSFQRADARIAATMDNAMNGEI-MPNIPQMNAFWSSAKNAIINIVDGRQTVDAALADAEKQMTK........ 406
21 -75.300IDP01422 glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein VC1549 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  1MNK---------VWLTGLLTATASGVFSASTL------AATEITWWH-------AMGGQLGETVNQLATDFNASQSDYKLTPVYKSYTETLTAGIAAFRAGQAPNILQVFDAGAATISSKGVAKPVQDLMIEPFTAQDYIAGVRNFADNTGKMVGMPFNSSTPVLYYNKDMLASVNAQ----APQTYEQLEQVAAKLAEKGQAGFAQSPWIMFENFKSRHNLPLSDKQNGYQDLSTKIMFNSDDMLMHVKKLKEWSDKGYYKYYGS-DWDANQTPFERGEVAMWMGSSGSFGGLRNRV----KFNLGTTYLPYWESVTKNPTHTAALFALQGHTPAQDKGVAAFFAYLTK-PETQMNWHKTTGYVPVTNAAYDLTENPDAEVGVKQLSLPDGKGYRLGYYPQVREVMHREFDNIFSGRSTVESSLNKVEDESAKLLNRFART 432
22 -75.200IDP04058 ABC transporter, solute-binding protein [Clostridium perfringens ATCC 13124] CPF_0556 [Clostridium perfringens ATCC 13124]  ali follow..  16  1MKRKMLTVACVTAIAASAFVGCGNKEEAPKDNEKPSSGEKKVLEIAVF-------EGGFGKDYWDACIDAFEAEHPDVEVKMEANP--KIGDIIRPKLSSENTPDFIYLSTNDANALIKDKALVDLSDVFDRDKILPGFLDTPLTTPYGDGKVFLAPLYYNVTGMWYNKALFKEKGWE----VPKTWDEFFELGKKAKDEGIALYTYQGQAPGYNEAVIFPMLASAAGEEAVEKYEEGAWKDPNVKKALDVFQRMADEDMVLNGVGMTHTQAQVEFLNGKALFLPCGSWLEGEMKDAIPE--GFEFGFMAPPAFKEGDTPYVTTTIEQMYIPAKSDQVELAKEFLAFQYT-DAMVQKNAEIAKAVVPVKGAVEKAKSSLDASGYESYKFVEEGAKPIPLSDFRNDSLFGPVGSIINKELTVDEWINNLESDSQTLAKEVVE. 461
23 -72.300IDP06519 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN09962 [Enterococcus faecium DO]  ali follow..  14  1MKKRYLVIALLNITLLFSLSACGKTNEEVTANIADPMKKATTLEVYVA--------NGKLTNYVENAAKIYNRKGANIDLKIVNVASGTTVQMITPKLVTHDMPDIISMADTSAAGVLEKDAFYSADEYGFYDKYGDQFYDNILRQQTSNETIIPWASDFTPALCYYQPKKFAEIGVD--FEEISSWEEYIQVAKALKEKTGSFG--IALPESGDQELFINMLAQQNQSLLDEE-GNIRLNTKEAKHAAKLIKEMIDSDIVHFYGAQD-----AEKAFQESAMFVAGGWYATNMSLNFPDASD-KWRMAPLIPSKENPGKGAVSGGSSFYVPKDAKNPQVAQQFLTFMLT-DEECLANALELGVATSNSLAYQTEAAEKKFDY........................................................... 374
24 -49.300IDP05694 hypothetical protein lmo2007 [Listeria monocytogenes EGD-e] lmo2007 [Listeria monocytogenes EGD-e]  ali follow..  14  1MK-KKWGVIIASLCLLLGLSACGSDEKAD-------ANEVPTLKWYM-------GTPQKDTEEVMKEVNKYTEEKIGVKVEMTQIDWGDYGKRMQTVINSGENFDIAYSAAGEFVSYSQKGAFLPLNKYLDKKKMKAELNDVLWEGATIDGNIYGVPSNGEQQVYVFNKNLVDKYKMD--VTKVKNFSDLEPMLKTIKENEPSITPIGGNKDFKPAFPYDYLIDNAVPLPFDTGKIVNFYEQPETLDILKSLHSFYQKGYVTKDIATSTDPWSYDKENWFVRIEKYQPYA----ENIWDKNTGGKYKVVTQPIAETPIIKNNSVTGAIQAVSVTSQHPEEAVKFLDLLNTDEYLRNLVELDDGKIQDLPARVERYEFNKKSVASPGLGFYFDSSKVRTEIASITNVCNEFAPALLTGTVDPVEYTEKFKAKMKKVMKEMQKQ 476
25 -47.500IDP92625 ABC transporter, substrate-binding protein [Streptococcus pneumoniae str. Canada MDR_19F] SpneCMD_010100009638 [Streptococcus pneumoniae str. Canada MDR_19F]  ali follow..  13  1MKKKYAFASASVVALAAGLAACGNLTGNSKKA--ADSGDKPVIKMYQ-------GDKPDNLDELLANANKIIEEKVGAKLDIQYLGWGDYGKKMSVITSSGENYDIAFADN--YIVNAQKGAYADLTELYKKKDLYKALDPAYIKGNTVNGKIYAVPVAASSQNFAFNGTLLAKYGIDISGVT--SYETLEPVLKQIKEKAPDVVPFAIGKVFIPSDNFDYPVANGLPFVIDLEGDTTKVEVPRFKEHLKTLHKFYEAGYIPKDVATSDTS--FDLQQDTWFVREETVGPADYGNSLLSRVANKDIQIKPITNFIKKNQTTQ---VANFVISNNSKNKEKSMEILNLLNTNPELLNGLVLYINENVTDQQIENSKKELAEAKESPALGFIFNTDNVKSEISAIANTMQQFDTAINTGTVDPDKAIPELMEKLEKVLNEMQKQ 482
26 -47.100IDP04329 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1466 [Clostridium perfringens ATCC 13124]  ali follow..  13  2LKNKKLIALLLGGIIGTSLAGCGSGGSASSSDGEGEK--PVNLVWYV-------GKPQNDGELVEEEVNKYIKDKINATVDIKHIDFGDYSQKMNVIANSGEEYDLAFTCSFPYLDNARKGAFLELNDLIDSKDLKNVIDERLWKGAEVDGNIYAVPNIAGAPMWVFDKELVEKYDIP--YQDIHSVDDLEPWLALIKEKEPDFVPFYTQGDGIPIEGIEDITSGLGIFYDDKSLTKNMYETEELKHLFTKLREFYEKGYINQDAAVSNMKNEVKRFVWKAD---------GQPYAENGWSQSLGREVVTSSIVSSYVTNASTTGA-MTAISATSKHPEKAMELINLVNKDSTLRNLLKVSDNQIKRDPNGDAFEEFNQKAKTSTILGFKFDTEKVVTQMSAVSNAFEEFIKPLYTGSVDTEETLEKLNKKLEDIKVELQRQ 474
27 -46.600IDP04378 extracellular solute-binding protein [Clostridium perfringens ATCC 13124] CPF_2335 [Clostridium perfringens ATCC 13124]  ali follow..  12  4FKKLIALTACAMLTTSVALTGCGADKTA-----NAGEGETVKLTWYT-------GQTPKDLDMVQEKANEYLKEKINATIDMKFIDYGDYTQKMGVIINSGEPYDLAFTCSNPYLENARKGAFLEIDELLETKEMKSVIDERFWEGAKIDGKTYAVPNQGVAPMWVFTKEYVDKYNIP--YQDIHTLEDLEPWLKVIHENEPDVTPLYITKGFSAPAYFDQLVDPVGVEYGDESLKKNMFETDKMKSELETLQKYYDAGYINADATAKDDKAVKRFVTKADGQPY----------ADGLWSKDLGYEVVSSPIMDTHITNGSTTGS-MIAISKTSEHPEKAMEFLNLLNTDVYLRNLLKTSDTQIKLTDKAKEFEAFNDASVESPALGFKFNTEKVSNQIAAINNVLEEFKATIYSGSVNEAEYLDKMNKKIDEVISEMQSQ 472
28 -44.800IDP04240 extracellular solute-binding protein [Clostridium perfringens ATCC 13124] CPF_1077 [Clostridium perfringens ATCC 13124]  ali follow..  12  2IKRKKALSLILSGIVCSSLTGCGNSKEEESK-------ETVNLTWYV-------GDEPADNDIVEEEVNKYLKDKINATVDIKHIPFGDYTKKMSVISNSGEPYDLAFTCSFPYLEYARKGAFLELNDLLDTEGLKKEINKELWKGAEIDGKIYAVPNQKEAPMWVFDKELVEKYNIP--YENIHSVNDLEPWLKLVKEKEPDFIPFYTQGDSIPLDFDDIVNPLGIFYNDKNLTVTNKFESKEMKDMLLKLREYYEAGYINQDAAVTDMKPEVKRFVWKAD---------GQPYAENIWGKSLGREVVTSSIIPPYITNNSTTGA-MTAISANSKHPKKAMELLTLVNTDTNLRNLLKINDKQIKKFDGKKYDEKFNNSAKVSPILGFKFNSENVSNQISAINNVLQEFERALYTGSIDPEVGLNDLNKKINEVKDEIQKQ 468
29 -39.200IDP91964 ABC transporter, substrate-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007935 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  13  1MKFKTFSKSAVLLTASLALAACGSKNTASSPDYKLEGQEKKTLKFMT------ASSPLSPKDPNEKLILQRLEKETGVHIDWTNYQ-SDFAEKRNLDISSGDLPDAIHASDVDLMNWAKKGVIIPVEDLIDKKKILDEKPEYKALMTAPDGHIYSFPWHSVNDMAWINKDWLKKLGLEMPK----TTDDLIKVLEAFKNGDPNGNG-FTFISGNGNEDFKFLFAAFDDHLVVGNDGKVDFTNDNYKEGVKFIRQLQEKGLIDKEFEHDWNSYIAKGHDQKFGVYF-------TWDKNNVTGSNESYDVLPVLAGPSGQKHVARTNGMGMVITSVNKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNSLKHLPLNGTTQEDLDKIAHIEADMNDYIYRKRAEWIVNGNIDTEGLSDYLAIKQKYYDQYQAN 536
30 -29.300IDP91956 ABC transporter, substrate-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005733 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  14  1..MFKNFKKIAFTSSLILLAACSNNASNTNQSTDEGSVDKSEIVIY----------TNSASNGRADWLQTKASE-QGYNLRLVDISGGELADRLIAE-KNNAVADMVILNKLEFNRIKAEKLLVKYSPKWADE----------VDSSLGDSEGYYSPIVNQPLVLIGNKDA----------KMPSDWTDF------TDSSYKGKYGISKLSTGTSKNIFASIVSRYK-----DEKGELGISD----EGWKVAKAYLKNAHVYA----EGEDYISSIMDNNNDLKYSMMWGSGVLQNQKEREYKFQV----SP----KVGVPYVTEQVGIL--NTSKKQALLKEFVDWFGS-SELQKEWSDKFGSIPANKKALEQAKDELKQFANSVKPQELDWEFIGKNIDSWIEKAQLEFVE............................. 352
31 -28.800IDP04509 iron compound ABC transporter, iron compound-binding protein [Clostridium perfringens ATCC 13124] CPF_0440 [Clostridium perfringens ATCC 13124]  ali follow..  14  2LKRKKLLALTLTALVSMVLAGCGQKNQEAKAEETGSGEKVVNV-------------SSRHYDIDKQLFKDFESD-TGIKVNLVDGKSDELIERMARE-GDNTSADVFLVGAENIAQLNEKDLIKDISSEKINENIPSEYRGKNW-----------VGLTSRARIIVYNKEKVNP-------ETIKTYNDL------TKDEFKGKVLTRSSSSSYNNALLSSFIQLDGAE-----------------KAKEWAQGIVNN--FARTPEGNDRDQAKAIMAGIGDVGIMNSYYIAKMISSSDAEEAKVGKEIGVLFPENTHLNLS-----FGAVTKNAKNEENAVALLEYLTE-EKAQKAYVDENGEFALNTKV....................................................................... 311
32 -28.200IDP90995 hypothetical protein y1430 [Yersinia pestis KIM 10] y1430 [Yersinia pestis KIM10+]  ali follow..  13  1MRLMKIKVFMFAMAALTTLPAFAQLPSYYPADYQDGAKKEGKVVVY----------SATDIKAAAPLIKGFEAAYPGIKVEYNDMNSTELYNRYISEQASGSSGDVVWSSSMDTALKLATDYALEY---------LSPEQAELPKWAIWKNKAYGS--TYEPVVFIYNKRLIPQADM------PDTHIALAKLIVSQPDKFKRKVTTYDIEKSGLGFMLSVQDFKADP------------------NYFTTLANIAKGGLT---VQSSTGTMMERVSSGENLIGFNILGSYAETRAKTDPSLGI------YPKDY------TLVLSRVTFISQKAPHQNAAKLWVDYLLS-EKGQNILANQSDIPSIRKDI-----------------------DGNNDIDGLTKKLGSALRPI---PVDESLLEYMEQAKRLDYIKQWRT. 365
33 -27.600IDP04248 ABC transporter, substrate-binding protein [Clostridium perfringens ATCC 13124] CPF_1477 [Clostridium perfringens ATCC 13124]  ali follow..  16  1MKKKILATLLTGLVLGTSLVGCGKTEGAE-------AGKKLVVSTW----------GLNEDVLKETVFEPFAKEH-GVEIVLDIGNNSERLTKMKN--NPNSQIDITYLAESFAEQGVEAGIFDKLD--YSKIPNASEMNEKAKST---VEAGYGPAYTLNSIGIVVDPSAGIE---------INSWEDL------WKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKTDN--------EAAFKELEALKPNVVK--------SKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINV------IPESG------TYLNFNTININKNSKNKDLAYEFINYALS-KEVQEKTAKALNESPVNKEVKLSEEETKNLTYGPVVDNA.................................................... 324
34 -25.300IDP01937 putative periplasmic solute-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0727 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  1MSKKFFLSLGLVALLFSNSQA-------IDENLIKAAQAEGRVNSL---------AMPDTWANWKDTWADLKNLY-DIEHSDTDMSSAQEIAKFKTEKKNASG-DIGDVGASFGEIAVKQGVAQPFKTSYWDQ----------IPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDI--------PKTWQD-------LLKGNYKITVGDVSVAAQAVSAVLAANYALGGDEKDLS------------PALAFFNTLAKQGRL-----VNNDVSIANLEKGEVEVGLVWDFNGLGYRD---KVGKDRYEVL-IPADG------SVISGYTTIINKYAKHPNAAKLAREFILSDK--GQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKELPQLWQEKVIVDMK...................... 348
35 -24.900IDP05164 putative ABC transporter, substrate-binding protein [Bacillus anthracis str. Ames] BA_1735 [Bacillus anthracis str. Ames]  ali follow..  16  1MKKFSKSLFVCTLLFSAVVTGCSSKTGNVDAKSKTTNEKKIVV-------------SAGPKGLAEKIQKDFEKK-TGIKVEMFQGTTGKILARMEAEKKKPVV-DVVVLSLPAMEGLKKDGQTLAYKEAKQADKLRSEWSDD-------KGHYFGY--SASALGIVYNTKNVKTA--------PEDWSDI------TKGEWKGKVNLPDPALSGSALDFVTGYVKKNGK-----------------DGWDLFEQLKKNEVTVAG---ANQEALDPVVTGAKDMVIAGVDYMTYSAKAKGEPVDI------YPKSG------TVISPRAAGIMKDSKNVEGAKEFIDYLLSDD--VQKQISKAYLLPGRTDI....................................................................... 304
36 -24.200IDP04270 gene: potD; spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein [Clostridium perfringens ATCC 13124] CPF_2226 [Clostridium perfringens ATCC 13124]  ali follow..  10  1MKLKKFLLTCSTLLLSSLFLGCGPKKDEEATQDKNNN----VLYVYNWGDYID-----------PELLTKFKEET-GIDVKYDV--YDTNEIMYQKLNSGNVSYDIVIPSDYMIEKMKEEDMLAKID--YSNIPNYKYIGEQFKNLAYDPTNEYSVPYMWGTVGIIYNTKRVSD--------PVDSWNILWNPKYK-----------------DQVIMPDSVRDAMAVAEKKLGYSLNTENLDQIEAAKKELMTQKKD----LILAYMVDQVKDAMVGGEASLAVAWSGDAVTMIERNPDLA------YAIPKEGSN----------AIAIPKNAKHKENAEKFINFLCDPENAEQNVEYIGYSTPNTAAYDDIRDDKVAYPDEESLKNCEVFIDLPSKILRKYDEAWLEIKC............................. 358
37 -23.100IDP01388 iron(III) ABC transporter, periplasmic iron-compound-binding protein VC0608 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  11QKEYSMKKLLSLSAITLSVLAPSAFAAQ-------------EVNVY----------SYRQPFLIEPMFAEFTKE-TGIKVNVKF-AKEGIAEKLAQE-GEYSPADVILSEFSRLFELTEKGLTQPLDSKVIEENIPAQYRDS-------GDEWFAL--TQRTRSVYSSRDRLGKLGD------DFDYMDL------AKPEFKGKICTRSGKHPYNIALVASIIANHGEA-----------------EAKAWLEGVKAN--LARKPQGNDRDQVRAIKEGLCDVSLGNSYYLGAMLNDQEQKSWAEAVYINFPGQNVQGTHVNVSG---MAMAKYSPNRENAQKLMEFLTG-ETAQKMYAEVNYEYPVKPGV....................................................................... 312
38 -22.800IDP91991 spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100001132 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11  1MK-KIYSFLAGIAAIILVLWGIATHLDSKINSRDSQ-----KLVIYNWGDYID-----------PELLTQFTEET-GIQVQYET--FDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLDY--SKIEGIENIGPEFLNQSFDPGNKFSIPYFWGTLGIVYNETMVDE--------APEHWDDLWKLEYK-----------------NSIMLFDGAREVLGLGLNSLGYSLNSKDPQQLEETVDKLYKL-----TPNIKAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLR------YVVPTEASN----------NMVIPKTVKNQDSAYAFINFML-KPENALQNAEYVGYSTPNLPAKELLPEEEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMYRK....................... 356
39 -22.600IDP05035 gene: potD; spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein [Bacillus anthracis str. Ames] BA_1300 [Bacillus anthracis str. Ames]  ali follow..  14  1..MKLTKRLAGAAISFSLVAGCGEKKE--------------ELNIYSWADNFD-----------EQVLRDFEKKY-NVKINYDK--YASNEEMLAKLQAGGAKYDLIQPSDYMVKTMAKMDLLAPLDK--KNIPNIENMVSNFKTPAFDPENKYSLVYTWGVTGIAYNKKYVKE--------APTSWTDLWNEKYK-----------------GHVTLLNDSREVLGMGLKKNGFSNSTKDDAQLKTAATDLQKL-----LPNLLAFDTDNIKQKFITEDAWIGTVWSGDAAFIAKDNKDVE------YVVPKEGGT----------TLAIPKGAKNKELAEKFMNYLLDEKVSVKNYESIGYSNPNEKAHPLHSKEYRENHMIFLTKEELDRTEWLVDVDDKLKDYDRYWTELKTKGK....................... 345
40 -22.500IDP00421 gene: potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily YPO1331 [Yersinia pestis CO92]  ali follow..  13  1MFTQRKKWLSGVAAGLLMAASVSASAEEK------------ILHIYNWSDYIA-----------PDTLANFQKET-GIKVVYDV--FDSNEVLEGKLMAGSTGFDLVVPSASFLERQLSAGVFKPLDK--SKLPNEKNLDPELLALVSKPDNKYAIPYLWATTGIGYNVEKVKAVLGEDAPVN--SWDLVLKPENLEKLKSCGVSFL-----DAPSEIFATVLNYLG----------KDPNSTLTADYTGSATDLLLK-LRPNIRYFHSSQYINDLANGDICVAVGWAGDIMQASNRAKEAKNGVNVAYSIPKEGAL----------VFAMPTDAKNQDEAYQFLNYLM-RPDVIANISNHVFYANANQAATPLVNAEDNPGIYPPADVRAKMFTLKVQDPKIDRVITRAWTKVKSGK........................ 369
41 -22.500IDP92649 iron ABC transporter, iron-binding protein [Streptococcus pneumoniae TIGR4] SP_0243 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  15  1MKKK-----------WMYYAACSSNESADDSSSDKGDGGSLVV-------------SPNSEGLIGATIPAFEEKY-GIKVELIQAGTGELFKKLESEKEVPVA-DVIF-GGSYTQYTTHGELFENYTSKENDN----------VIKEYQNTTGYSTPYTLDGSVLIVNPDLTKG-------MNIEGYNDL------FKPELKGKIATADPANSSSAFAQLTNMLQAQGGYKDD-------------KAWSYVKDLFTL--IDGKIGLSSSGVYKAVADGEMTVGLSYEDPAVKLLNDGANIK------VVYP----KEGTVFLPASAAIV--KKSKNMENAKKFIDFIIS-QEVQDTLGTTTTNRPVRKNA-------KTSENMKPIDKIKTLTEDYDYVIKNKSDIVKKYNEVFTDIQSKQ.................... 338
42 -22.300IDP01395 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein, putative VC0704 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  9VSYSQMIKRFLSLMVLNTVCYQASAL---------------ELNVYLWEDTIA-----------PSVVEAWHKKT-GVSVNLFHFDNDDRSLLMLK--SVQLPFDIMVLDNVSAFIFSRQNVFEDLTALPNRANNDPMWLQ--------ACGTHAVPYFWGSVGIAYRKSLFDK--------PPTQWSEVVDIAPAHRGR--------VGMLKDSVETLLPALYMLNASPITDSIDTL----RQAYRLLDAANPHILT-------EYVLSYVRSHPQTDNLHMAVSYSGDHYSLNRFF-NTQDWDFS---VPEGRPY----------CMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARAEHREDLSIYLPEQRLAEGIIDSELSAKNLSLRAKIISSVTYQYEAK........................ 358
43 -22.100IDP00429 gene: sfuA; iron(III)-binding periplasmic protein YPO2958 [Yersinia pestis CO92]  ali follow..  15  1MKIPIPSIGHVALLASAILFASSANAASDED----------GIIIY----------NAQHESFAKSWAEGFTKD-TGIKVTLRNGKDSELGNQLIQEGSSSPA-DVFLTNSPAMVLVDNAKLFAPLDAATQAQ----------VAKEYRPEDGRWTGIAARSTVFVYNPAKISEAEL------PKSLMD-------LAKPEWKGRWAASPSGADFQAIVSAMLALKGEQ-----------------ATLEWLKAMKTNATAYK----GNSTVMKAVNAGQIDGGVIYHYYPFVDQAKTGENSGNIKLHYFKNKDPGAFVSIS-----GAGVLASSKHPQQAQKFVQWVTG-KAGQDFLRESNSAYAVGVNA-----------------------ASNPKLVPLKDLDPPKVEVSKLNSKKVVELMTEA.............. 336
44 -21.900IDP05020 gene: potD; spermidine/putrescine ABC transporter,substrate-binding lipoprotein [Clostridium difficile 630] CD1027 [Peptoclostridium difficile 630]  ali follow..  11  1MIKKAISLIAVGMMIVTLFTGCNKATDSTK-----------VLNVYNVGDYID-----------ESLIDKFEKET-GIDVQYST--YDTNEMMYQKVKSGSTHYDLVFPSDYMVEKMKNEGLLEKLDF--KNIPNMKYLDKSFLNPVYDKTNEYSVAYMWGTLGILYNKKEVKD--------PMDSWNILWNPKYK-----------------GNIMMFDSVRDTIGITLKKLGYSMNSVNPKEINEAKNLLMKQ-----KDLVLAYVNDEGKDRLLGGEVAMGMLYSGDAVTLMEQNPDLD------YAIPKEGTN----------AMCVPTTAQNKKEAELFINFLL-DPENAKVNAEYIGYSTPNTGALKLLD------------------------PEITQNPVAYPSKEVLDKCETFEDIGENIKLYDKAWIELKSK 350
45 -21.900IDP01491 ABC transporter, periplasmic substrate-binding protein VCA0603 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  1MERMMNKRILKGTLTAIAALMSAHAFAGQ------------EVTVY----------TAFETDLLAKYKSAFEKENPDIEIKWVRDSTGIMTAKLLAEKDNPRA-EVVWLAGSSMALLKDQGVLKPYTPKGANELRANLNDP--------QAQQAWYGNDAFFNAVCFNEAVAKQLNL----PKPQSWEDL------TNPVYKGHIAMPNPASSGTGYMQVSAWLQNMGE-----------------KAWDYMQRLDQNIAH---YTHSGSKPCVQAGMGEVAIGISMATRGAKLKTQGAPLD------VIVPNG----------IGWESEAVGLVKESDAAKRVVDWSVSKA--ANELYIESYPIVGHQDVSKQVP-------NYPNVEKVMAKMDFTQMGVDRARVLQTWSEKFDAKSEPKS................... 339
46 -21.800IDP05673 hypothetical protein lmo0810 [Listeria monocytogenes EGD-e] lmo0810 [Listeria monocytogenes EGD-e]  ali follow..  14  1MKQLLKIFVPVIVVALLMMLLATTMNRSEGYAGSN------TLTIYNWGDYID-----------PSLITKFEKET-GIKVIYQT--FDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENLLIPLD--HSKLPNEKYLDPRFMDLSFDDDNKYSMPYFWGTLGIIYNKEMFPDKNFD-------TWNALFDPELK-----------------NQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETM-----TPNVKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLE------YVIPKDGSN----------NMVIPKTAKNVDGAHKFINFML-KPENAAINAEYVGYATPNAKAVELLPKESDERFYPDMDELNNLEVYDNLGKRMLSYYNELFLEFKMYRK....................... 357
47 -21.100IDP01418 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein VC1424 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  1..MKNKLFASALCAAALFTTNAMAKDQ--------------ELYFYNWSEYIP-----------SEVLEDFTKET-GIKVIYST--YESNESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDH--SKLSHFKDLDPNYLNKPFDPGNKFSIPYIWGATGIGINTDMLDKKSLK-------NWGDLWDAKWA-----------------GQLMLMDDAREVFHIALSKLGYSPNTTNPKEIKAAYRELKKL-----MPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMARQEGAPIQ------IIWPEKGTI----------SISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVIDNGEWQDEVGEASVLYDEYFQKLKVND........................ 345
48 -20.600IDP00471 gene: tbpA; thiamin transporter substrate binding subunit YPO0522 [Yersinia pestis CO92]  ali follow..  10  1.......MFKHIISCLLLISATSALAAEKP-----------TLTVYTYDSFA------ADWGPGPAIKQAFEAEC-DCQLKF--VALEDGVSLLNRLRMEGKNSDVILLDNNLVQAAEQTGLFTPSQVDTRNLTLPEPWQNKTF-----------VPYDYGYFAFVYNKEKLKN--------PPKSLHEL------ISSKEPWKVIYQDPRTSTPGLGLMLWMQKVYGD-----------------QAPQAWQQLAQKTVT---VTKGWSEAYGLFLKGEADLVLSYTTSPAYHLIAEKNN--------NYAAADFSEGHYLQVEVAGQL--AASKQPELAQRFMQFIVT-PAFQNHIPTGNWMYPVIKMDLPAGFETLAV----------------------------PQTALQFDAKDVADNRSKWIQAWQSAVSR.... 330
49 -20.500IDP01419 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein VC1425 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  23.SMKKLATLLAGSACALSLLSGTAAAEDK------------ELVFMNWGPYIN-----------SGILEQFTKET-GIKVIYST--YESNETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDK--SKLSNFKNLDSNYLDKPYDPNNDYSIPHVVAITGLAVNTDMYDPNDFQ-------SWGDLWKPELK-----------------GQLMLMDDTREVFHIALRKLGYSGNSTDDKQIDEAYAELQKL-----MPNVLVFNSDNPAAPYLSGEVGLGMLWN---GSAAAAQKEGLPIKLV---FPKEGGI----------NFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYLTGVKASNDKFQDVAPLFPSQEDLDRVEWQSAVGDKTVKYEEYFMK................................. 361
50 -19.600IDP01506 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein VCA1113 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  1..MKTFIKGLVLSAVV--------------ASSQVYAEQTLNVYAWG-------------GYLPEKSLKAFEQQE-GVTINYSTFENNEMYTKLKL--LKGTGYDVVFASAYFIEKMGREGLLAEIDH--NQIPNMKDAMPTVLGLAHDPQNKFSLPYIWGITGLYYNSSTLPN--------GITKWADLWDKQYE-----------------QQVMLIDDIRDVFGMALKLNGFSINTKNEEEIKKAYESLVAL-----KKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEMPELK------FVMPEEGAV----------NFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASATKGGRAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN............................. 342
51 -17.000IDP02672 hypothetical protein FTT1602 [Francisella tularensis subsp. tularensis SCHU S4] FTT1602 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  18  1..MKKQLFAISITTALLVLSACGQTGNSGSTLAKSGSSIMVKQNQQNNSTSTSDNQSDTSTKVDNDPTAPVRNNNPTTSELFEGENNFNYNNNIQNSQNAGGTPTL................................................................................................................................................................................................................................................................................................................................................ 114
52 -16.900IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  34  1M-LKKLGILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAK................................................................................................................................................................................................................................................................................................................................................................................................................ 41
53 -16.200IDP05442 putative lipoprotein [Bacillus anthracis str. Ames] BA_0171 [Bacillus anthracis str. Ames]  ali follow..  16  1MSKKLLSLFSAVIVAAFVITGCGQSDTTNKEQKENAAKENKT................................................................................................................................................................................................................................................................................................................................................................................................................ 42
54 -14.900IDP05670 hypothetical protein lmo0617 [Listeria monocytogenes EGD-e] lmo0617 [Listeria monocytogenes EGD-e]  ali follow..  13  1MKKKSILLLMGIITFALALTACGGTEDKASTEKIETAKAETK------KKSNPNELGDYKVEILSSEVVKDFEGNNAIAIKTKFTNNSKENISFMVAIDQQAFQN------------------TQLETTVSADASMGGSEKDVQPGGTLEVTEYKLQDTQNTVDIEATELISFS............................................................................................................................................................................................................................................................................ 153
55 -14.500IDP01383 thiosulfate ABC transporter, periplasmic thiosulfate-binding protein VC0538 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  9  1MNR------IKSTLTALLLAGSFQASAADQ-----------TILNSSY---------DIARELFVAYNPVFAEHWQTVEIKQSHAG----SSAQARSILQGLAADVVTF-----------NQVTDVQILHDKGKLIPANWQTLLPNASS--------PYYSTTAFLVRKG----------PKNIQDWSDLVRDDVKSVFPNPKTSGNARYTY-----------------LAALGFAQKQFGQDNQVQQDEFLKKFLANVAVFDTGGRGATTSFVERGIGDVLITFE-----SEVNNIRQQYGADDYQVVVPKTSILAEFPVAVVEK----VAKRNGTYDVATEYVSYLYSEP--AQRLLAEFNYRVHDAKVQAEFA------------------------ERFPAVELLTVEGIAGGWEQAMQTQFANGAKLDQLLRR.... 333
56 -14.100IDP05439 hypothetical protein lmo2499 [Listeria monocytogenes EGD-e] lmo2499 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKKKYLGIVAMLAAVMLVFAACGSDSSSADKANGSTKGDSGSLTA---------VGSTALQPLVEAASKEFTNTNPKAQINVQGGGSGTGLTQVQQGAV-----EIGNSDVFAEEKDGVDAS-----------------------------KLVDHRVAVVGMAPVVNKD----------GVKNITKQQLIDITGKTTN----------------------------KDVGGKDEKITIINRAEGSGTRATFEKWGLDGKTPIKAQEQDSSGRKIVSETPGAISYLAFSYIDSLDGVEPTEDKVATNDWKIWSY--------------EHMYTNGEPKGLTKTFLKYMTS-DEVQNNIVPQLGYQSIKSMKVERDASGKLTDVK.......................................................... 302
57 -13.600IDP05504 gene: modA; putative molybdenum ABC transporter,substrate-binding protein [Clostridium difficile 630] CD0869 [Peptoclostridium difficile 630]  ali follow..  15  1MK-KILGILGLVACLTLGTVGCNSNEDKKDNEKTTKSSDSVELNI---------SAAASLKEAMAKIEEEYKKVDSNVKLTVNYGASG----SLQQQIEQGAPCDLFIAGQKQMKVLDEEKLLVSVKNDLVLISSADSSVSGMKDLTTDKVKKIAVGEAESVPAGKYADEVLTNLNLKDKLKDKLVFAKDVKEVLAWVQSGNADVGFV-----------------YFSDTVNNDKIKVVEKTDEKTHS------------------------------------------------------------------------------YPVSVIKASKNVDAAKKFEEFLLSESGQK....................................................................................... 259
58 -13.200IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630]  ali follow..  8  1MKNKKIMLVLSILSISIFAVGCTNAQNGSDSSKKETKSNTNVEQ----EVPNNKAKPTPKEETKAQSATIYDVDKTDLIENKVDLNKIDENTLFEELQKLKVVPESAKLNSFTTKDIDGVKTGLDVSSDFTKSNLGSDAETLMLDSVA---RTYIKNMNVEQIKITVDGSNYESGHIV---EEGDYLK.............................................................................................................................................................................................................................................................. 191
59 -13.100IDP05207 putative sulfonate ABC transporter,solute-binding lipoprotein [Clostridium difficile 630] CD2365 [Peptoclostridium difficile 630]  ali follow..  11  3LSKKIQALILFGVMGTSILTGCSSKPKEKEEAKTGKDDYTITVGYYNCDHMTAGPVAESAG---------YKDL--GLNVKTVGNG------KVPEAMAAGKM-DAGYIGTKGLVGAIPKGSITIAANNHTGGSEYLIVSKDIKEPKDLIGKKIATDMSDFLWTSDYGP--ETGLPT----------------------------------------------------------------DPSKYEVVNM---------------DSDKDKYLALKTGKIQAFTSCDPWGSVAENDGAGKIIASTQYKEKANGKEYNCCSFSLNKNFI-----KEHPDLAKKLVLYIYTNPAEAAKIFAKYYNVEEEVALRTIYKKTVGEGRTLTWKVTGEEYKNNLQMYKDLKALDDIIDTSLLDSCGADDFDKFIKEKVNPEFPEGMS. 354
60 -13.000IDP05622 ABC transporter, substrate-binding lipoprotein [Clostridium difficile 630] CD0999 [Peptoclostridium difficile 630]  ali follow..  9  1MK-KYISIILLVVLTMVVLVGCSPGK-DNPKNKELSVVKQVKVAV-----------DGLPAVAIAKLANENPEIKEGYETVYSIEKTPE---AISTRVMKKDA-DIAIVPSNMAAIAYNKTSSYNIVGTVGMGSLYLVSTENIKDYSDLVGKEVGCTGKGLTPDITIKS-LLLQKDINYSDIKFNYVSSASELVPLLATGK................................................................................................................................................................................................................................................. 184
61 -12.400IDP05267 hypothetical protein lmo0255 [Listeria monocytogenes EGD-e] lmo0255 [Listeria monocytogenes EGD-e]  ali follow..  10  1..MKKFLSILSILVLALLVTACGSDSSDKKSAKKEEKMETVTYIA-DINGAKLEATFSHVGDNLRKVDQKMVYPLTALGLESGANLDDATKKQLEEQVASQYSAYKESKGASLETKFTDEALELTMSDLYKADKDS--------------ASLLGGTTDPKNVSLKETVKQFEAQGFKKKES.................................................................................................................................................................................................................................................................... 167
62 -12.000IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  9  1MK-KLLVPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNS--NNNSSNNDTKKSDSNNASHKDNKDNNVSNNKNTNKKLDNKAEKLLKDIKEKAVKGEIIDY---------DFKLGDSIYDVIDKLGKPSSENYVAEAKGNYFNFDSYNLSFGCNKGDQIFEIRNNVENFFG.......................................................................................................................................................................................................................................................................... 178
63 -12.000IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  14  1MKVVKIALLCLTFTCIFALAACKGTDEKKETNPTSENSKNEQNT--TDSNSKDIVINQKSINHVKNLFELAKEGKPNVPFAAHTGDIEEIEKAW------GKADKTEQAGNGMYATFTNKNVSFGFNK--GSQVFDVRSYHAELKSITLQEKALGKP-KVNHISVFSPEDSINKAG.......................................................................................................................................................................................................................................................................... 214
64 -11.600IDP02402 hypothetical protein FTT1778c [Francisella tularensis subsp. tularensis SCHU S4] FTT1778c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  16  1MKLRKVLIATLLGASALSLSSCWLLVGAAVGGGTAAYISGEYSMNMSGSVKDIYNAKKSITSVDAVVDGSIKVDSTSFYVKIEKLTDNASKVTIKFGTFGDQA................................................................................................................................................................................................................................................................................................................................................... 117
65 -11.600IDP05678 hypothetical protein lmo1041 [Listeria monocytogenes EGD-e] lmo1041 [Listeria monocytogenes EGD-e]  ali follow..  12  1MKK---IVLIICCGLLLLLGACEDTPEKVQT-------TTIHIS-----------AAASLKDSIDDVKPLFEKANPTIKLSFDFGGSG----QIRERVESGAPIDGVLASKKDADTLIKQNLAEKTKEFAGNELVVDQKTEANLEQLLNDASKIAIGDPESVPAGAYAKQTLENLNLYNAEKAKLVLATDVRQVLSYVEAGNADAGFVYQTDALLSKKVQVKAKIDEKLHDPIAYYSAQVSDSDKKEETATFLDFMNKSEAQK................................................................................................................................................................................... 245
66 -11.000IDP91135 hypothetical protein SAOUHSC_00137 [Staphylococcus aureus subsp. aureus NCTC 8325] SAOUHSC_00137 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  9  1MKR----LSIIVIIGIFIITGCDWQRTSKERSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNH----------KYKLELVKFN----WPDLMDALNSGRI-DGASTLIELAMKSKQKGSNIKAVALGHHEGQKGMHLNEFNNNGD--DYHFGIPHRYSTHYLLLEE-LRKQLKIKP--------GHFSEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQ............................................................................................................................................................... 267
67 -10.800IDP06193 gene: lpp20; lipoprotein [Helicobacter pylori J99] NP_224067 [Helicobacter pylori J99]  ali follow..  9  1MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATK---WVVGDLEKVAKYEKYSGVF---RAEDLITNNDVDYSTNQAT-AKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVL--------VGLDKQIVDKV........................................................................................................................................................................................................................................................................... 166
68 -10.800IDP91442 ABC-type phosphate transport system, periplasmic component [Vibrio vulnificus CMCP6] VV1_0466 [Vibrio vulnificus CMCP6]  ali follow..  10  1MKR---WWLSLLLMGGISASAQALDTPLQPYKKIPGVSGNLLSV-----------GSDTLAGMTTLWVEEFKALYPNINAQVQASGSSTAPPALTEQTA-----QFGPMSLREVEAFERTHGYKPTA----------------------------LRVAIDAIGIFVHQDIFSATLRCGAEDFVSTWAQL------------------------------------GIDAEWAKRNFQLFGRNSVSGTYGYFKKHAGDFKSQVNEQPGSASVVQSVASTLSGIGYSGVGYRVAGVRLLPIAKQGNEFVYPSRENILTGDYPLSRYLYVYVNKHPSKALSIEAEFIKFIYSAQ--GQALVEKDGYVSITEEFAKQ.................................................................... 310
69 -10.700IDP05445 hypothetical protein lmo0821 [Listeria monocytogenes EGD-e] lmo0821 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKK---IIFTVVLSLVLVLAGCADVTNTVKVDKKGEATISFDIDI-------SSVAGIFASSYSDEVEAKLKEAGFTVD-SYHIEKKVDKNETTKSDMKPEDFGVKITNSKSFFTQKIKVDADIDIEKIWKKEVADVPFPKEILSQVDYT--ILDLP------------SSIGENNAKSVDGGKLTWDVPLDKKSEMYFE.................................................................................................................................................................................................................................................. 182
70 -10.600IDP04063 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_0514 [Clostridium perfringens ATCC 13124]  ali follow..  11  1MNKRKIVASILTSLLVTSLVGCVGSNNKANTSSNDSKVQESVENQSDFNDLRTGKTYNEVSENKGTGNENIEEVAGKKVIVSSSYSTRMFNYNANLILELDDSKNISAVS--HFKGIEPENILENIKKVLGEPKISKDKENGDSKVYSWDGYQYKLSQVGEETIITVNKSAI.............................................................................................................................................................................................................................................................................. 176
71 -10.600IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]  ali follow..  12  1MKLKKGTAVLFVMIMAVMLVACGDKEETKT--TLSQNGVDSKLTY-AENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEV------DYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQ............................................................................................................................................................................................................................................................................................................ 146
72 -10.400IDP04389 gene: pstS; phosphate ABC transporter, phosphate-binding protein [Clostridium perfringens ATCC 13124] CPF_0617 [Clostridium perfringens ATCC 13124]  ali follow..  12  2FKKRLIAIIGTIFIGATAMVGCNSGGSEAKSTNSVSISGSTSVG-----------------PVMEAEAEAFKTKKPDVSIEINQIGSSAGIKNAMEGVS-----EIGMASRD-------------------------------LKGEEKQAGLKEVEIAYDGIALITHKN----------PVKDLTLVQIKDITGKITN----------------------------KELGGNDAPIVVVSREDGSGTRDAFQEIVGFKAEELTVNSQISDGSGNIKSLVQGNENAIGYISFSYVDDSVSAVKVD-----EATPENVLNKSYKVSRPFLAVYKEENLTESGKSFIDFILSEE--GQDIVAKEHLIKVK.......................................................................... 276
73 -10.400IDP05592 putative lipoprotein [Bacillus anthracis str. Ames] BA_3194 [Bacillus anthracis str. Ames]  ali follow..  9  1..MKILKFGIIGALSITLLIGCTSNSNETKASNKEASNSKSSNQVVNTENIKTIFTSMESAEKKTLLLDQEAKNYIHSKMKVTYQDNSIQEFFVWIESDSDIVIAKASDETHGEGYDLREDNSKKIIQFFEKEF.................................................................................................................................................................................................................................................................................................................... 160
74 -10.400IDP05429 hypothetical protein lmo0791 [Listeria monocytogenes EGD-e] lmo0791 [Listeria monocytogenes EGD-e]  ali follow..  12  1MK-KGLFSMVLVLAMVLVLSACGASRVEPKKAGEITSFKESFISTFTASFSSDVNLDKQVDEFYDALRKQVNEK---TSYTTKVTNDDKESPEIQFAIKGLDMKGVQTELVEELTKAATADPSIASDDQKMAEKTMEIYTKAVQNADAVSEA----------------KTVTLKLKADPDDDSLWKMENDMAFMQELTTA.................................................................................................................................................................................................................................................. 210
75 -10.300IDP05398 putative phosphonate ABC transporter, phosphonate-binding protein [Bacillus anthracis str. Ames] BA_3750 [Bacillus anthracis str. Ames]  ali follow..  12  1MLKKFFAMSTTVVLAAGLLSGCGTKESSANKNDTKKGYVPKTLNVQFVPS----QNADTLEAKAKPLEKLLSDK---LNIPVKVSISTNY-NTIVEAMASKQV-DVGFLPPTAYVLAHEKKAANVILQAQRFGVDDET-DSNINSVKDLKGKKIGYQDVTSSAGYVWPAAVLLKEGVD........................................................................................................................................................................................................................................................................ 188
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.