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Query: IDP91958 Trk family potassium uptake protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004562 [Streptococcus pneumoniae str. Canada MDR_19A], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDRTIGILGLGIFGSSVLAALAKQDMNIIAIDDHAERINQFEPVLARGVIGDITDEELLRSAGIDTCDTVVVATGENLESSVLAVMHCKSLGVPTVIAKVKSQTAKKVLEKIGADSVISPEYEMGQSLAQTILFHNSVDVFQLDKNVSIVEMKIPQSWAGQSLSKLDLRGKYNLNILGFREQENSPLDVEFGPDDLLKADTYILAVINNQYLDTLVALNSLast
1 -80.500IDP91958 Trk family potassium uptake protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004562 [Streptococcus pneumoniae str. Canada MDR_19A]  ali  100  1MSDRTIGILGLGIFGSSVLAALAKQDMNIIAIDDHAERINQFEPVLARGVIGDITDEELLRSAGIDTCDTVVVATGENLESSVLAVMHCKSLGVPTVIAKVKSQTAKKVLEKIGADSVISPEYEMGQSLAQTILFHNSVDVFQLDKNVSIVEMKIPQSWAGQSLSKLDLRGKYNLNILGFREQENSPLDVEFGPDDLLKADTYILAVINNQYLDTLVALNS 221
2 -76.000IDP00666 TrkA potassium uptake family protein SACOL1096 [Staphylococcus aureus subsp. aureus COL]  ali follow..  33  2..GKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKR--GKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIA 218
3 -75.600IDP01104 potassium uptake protein, TrkA family BA_4191 [Bacillus anthracis str. Ames]  ali follow..  34  4.KEKEFAVIGLGRFGGSICRELAQLGMEVMAIDSDEDKINEFANIASHAVIADSTDEMVLKSLGIRNFDHVVVAIGDNLNSSILTTLILKELGVKNITVKAQNDYHEKVLSKIGADHIVHPERDMGKRIANNIASSNVLDYLELSDEHSIVEIIANKKIDGHSLIELDIRAKFGLNIVAIKR--GKEVIVSPRATENIQAGDILIVIGHDDEVDRFKHFLR 221
4 -26.100IDP02155 gene: trkA; potassium transporter peripheral membrane component [Yersinia pestis CO92] YPO0239 [Yersinia pestis CO92]  ali follow..  19  2....KIIILGAGQVGGTLAENLVGENNDITVVDIDSGRLRQLQDKFLRVVQGYGSHPRVLREAGAEDADMLVAVTNSDETNMIACQIAYSLFNTPNRIARIRSTEYIREADKVPIDHLISPEQLVIDYIYKLIEYPGALQVVNFAEGIAAVKAYYGGPLVGNALSSLREHMHIDTRVAAIFRQDR---PIRPQGSTIIEAGDEVFFVAASQHIRAVMSE.. 224
5 -26.000IDP91398 gene: trkA; potassium transporter peripheral membrane component [Vibrio vulnificus CMCP6] VV1_1045 [Vibrio vulnificus CMCP6]  ali follow..  18  2....KIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSPQYLAQKEAIPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEELVAVKAYYGGPLVGNALSALREHMHIDTRVAAIFRQGR---PIRPQGTTIIEADDEVFFVAASNHIRSVMSELQ 226
6 -12.000IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  15LKEKKVAIIGYGSQGHAHAQNLRDNGFDVVVGLRKGKSWDKAKEDGFSVYTVAEA---------AKQADVVMILLPDELQPEVYEEEIAPNLGNSLVFAHGFNVHFDQVKPPVNVDVFLVAPKGPGHLVRRTFSE...................................................................................... 142
7 -11.900IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  14LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEA---------VRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHG...................................................................................................................... 107
8 -11.100IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  16IKSKKVAIIGFGSQGHAHAMNLRDNGVNVTIGLREGSVSAVKAKN-------AGFEVVSVSEA-SKIADVIMILAPDEIQADIFNVEIKPNLGKAIAFAHGFNIHYGQIVVPKGVDVIM...................................................................................................... 128
9 -10.200IDP06313 hypothetical protein SP_1627 [Streptococcus pneumoniae TIGR4] NP_346067 [Streptococcus pneumoniae TIGR4]  ali follow..  15  2....KLAVIA-GQAGKAIVEEAVKRGHEVTAIVRSENKSQAES-----IIKKDLFEL---TKDDLTGFDAVISAFGAYTPDTLPLHSK-----SIELFNQLLAGTQTRFLVVGGAGSLYIDE................................................................................................... 107
10 -9.950IDP01944 putative sugar-nucleotide epimerase/dehydratease [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1427c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  18  1MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNQISLLSCFHNKNFTFINGDAMDENLIRQE-VAKADIIILAKMINYEAVKMISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGI.............................................................................................. 146
11 -9.640IDP01907 gene: solA; N-methyltryptophan oxidase [Salmonella typhimurium LT2] STM1160 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  2..KYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHHGDTRLIRHAYGEGEKYVPLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPAD---SAFLANVARSAQQWQLNVERLDATALMTRWPEIRVPDNYIGLFEADSGFLRSELAITTWL--RLAREAGCAQLFNSPVSHIHHDDNGVTIETSEGC--YHASKALISAGT............ 201
12 -9.550IDP05101 gene: hbd; 3-hydroxybutyryl-CoA dehydrogenase [Clostridium difficile 630] CD1058 [Peptoclostridium difficile 630]  ali follow..  16  2....KLAVIGSGTMGSGIVQTFASCGHDVCLKSRTQGAIDKCLALLDKNLMDEATKAEILSHVDLKDMDLIIEASVEDMNIKKDVFKLLDELKEDTILATNTSSLSITEI----ASSTKRPDKVIGMHFFNPVPMMKLVEVIS.............................................................................. 152
13 -9.490IDP02780 NAD-dependent epimerase/dehydratase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA0507 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  1MSKKCLITGGAGFIGSHLAEELVGRGYNVTIVDNKNKYHDELMKEIR-VIPISVLDKNSIYEL-VNQHDVVFLAAILGVKTTMIELIETNFDGTRNILQAALK--GKKKVVFASTSEVYGKAKPPFSEEGDRLYGATSKIRWSYAICKTLEETLC-LGYALEGLPVTIVR----FNIYGPRAKDGPYAGVIPRFISAALQGEDILVYGDGEQTRCFTYVSD 221
14 -9.250IDP00503 gene: fadB; multifunctional fatty acid oxidation complex subunit alpha YPO3766 [Yersinia pestis CO92]  ali follow..  16  314...KLAAVLGAGIMGGGIAYQSALKSVPVIMKDINENSLDLGMNEAAKLLNKQLERGKVDGLAGIERAQVIVEAVVENPKKAAVLAEVEALIGEDTVLASNTSTIPIDQL----AKSLKRPENFCG------------MHFFNPVHRMPLVEIIRGAKTSDKTLAAVAYATQMGKTPIVVNDCPG--FFVNRVLFPYLAGFGMLVRDG............. 517
15 -9.070IDP95479 S-adenosylhomocysteinase Q5CPH1 [Cryptosporidium parvum]  ali follow..  17  266LAGKKIVVLGYGEVGKGCAQGLSGVGARVIVTEIDPICALQASMEGYQVSVLEDV---------VSEADIFITATGN---KDVITVEHMRKMKENAYIANIGHFDDE.................................................................................................................. 360
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.